Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.11471 Avicennia marina HOM05D004263 ORTHO05D004931 2.8e-137 491.9 238 100.0
SGA_v2.0_scaffold90G27889 Striga asiatica HOM05D004263 ORTHO05D004931 4.3e-122 441.4 237 89.5
unitig_0.g1433 Utricularia gibba HOM05D004263 ORTHO05D004931 3.2e-117 425.2 231 88.3
Migut.O00120 Erythranthe guttata HOM05D004263 ORTHO05D004931 1.3e-115 419.9 230 87.0
SalBow7G3995 Salvia bowleyana HOM05D004263 ORTHO05D004931 7.4e-114 414.1 232 84.5
TWI75G0058 Tripterygium wilfordii HOM05D004263 ORTHO05D004931 1.6e-113 412.9 230 83.0
GSVIVG01030005001 Vitis vinifera HOM05D004263 ORTHO05D004931 1.8e-112 409.5 230 83.0
Manes.12G082900 Manihot esculenta HOM05D004263 ORTHO05D004931 2.0e-111 406.0 230 81.3
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 3.4e-111 405.2 230 81.7
CANSAT64G2398 Cannabis sativa HOM05D004263 ORTHO05D004931 4.5e-111 404.8 230 80.0
CSS0002238 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 1.0e-110 403.7 230 81.7
CSS0005038 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 1.0e-110 403.7 230 81.7
CSS0035503 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 1.0e-110 403.7 230 82.2
arahy.Tifrunner.gnm1.ann1.RA2UAB Arachis hypogaea HOM05D004263 ORTHO05D004931 1.3e-110 403.3 230 82.2
Cfa010655 Carpinus fangiana HOM05D004263 ORTHO05D004931 1.3e-110 403.3 230 80.9
Nitab4.5_0000025g0490 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.7e-110 402.9 228 82.5
Nitab4.5_0001514g0010 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.7e-110 402.9 228 82.0
Solyc06g005080.4 Solanum lycopersicum HOM05D004263 ORTHO05D004931 2.2e-110 402.5 230 81.3
Sopen06g001070 Solanum pennellii HOM05D004263 ORTHO05D004931 2.2e-110 402.5 230 81.3
COL.COLO4_13682 Corchorus olitorius HOM05D004263 ORTHO05D004931 2.9e-110 402.1 230 81.7
Duzib248G0991 Durio zibethinus HOM05D004263 ORTHO05D004931 2.9e-110 402.1 230 81.7
arahy.Tifrunner.gnm1.ann1.0PC56D Arachis hypogaea HOM05D004263 ORTHO05D004931 3.8e-110 401.7 229 82.5
MD17G1084700 Malus domestica HOM05D004263 ORTHO05D004931 5.0e-110 401.4 230 81.7
TAR627G0082 Trochodendron aralioides HOM05D004263 ORTHO05D004931 5.0e-110 401.4 230 80.4
Cfa014543 Carpinus fangiana HOM05D004263 ORTHO05D004931 6.5e-110 401.0 230 81.3
Peaxi162Scf00255g01022 Petunia axillaris HOM05D004263 ORTHO05D004931 6.5e-110 401.0 234 80.3
Eucgr.K00914 Eucalyptus grandis HOM05D004263 ORTHO05D004931 1.1e-109 400.2 230 81.3
Thecc.02G171500 Theobroma cacao HOM05D004263 ORTHO05D004931 1.4e-109 399.8 230 82.2
Prupe.3G231000 Prunus persica HOM05D004263 ORTHO05D004931 1.9e-109 399.4 230 81.3
Ciclev10014147m.g Citrus clementina HOM05D004263 ORTHO05D004931 4.2e-109 398.3 230 80.9
Hma1.2p1_0565F.1_g179560 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 5.5e-109 397.9 230 81.3
CAN.G2148.1 Capsicum annuum HOM05D004263 ORTHO05D004931 2.1e-108 396.0 229 80.3
Cc04_g12270 Coffea canephora HOM05D004263 ORTHO05D004931 2.7e-108 395.6 239 79.5
Oeu001693.1 Olea europaea HOM05D004263 ORTHO05D004931 3.6e-108 395.2 230 82.2
QL08p037237 Quercus lobata HOM05D004263 ORTHO05D004931 3.6e-108 395.2 226 82.3
QL08p037295 Quercus lobata HOM05D004263 ORTHO05D004931 3.6e-108 395.2 226 82.3
Actinidia39296 Actinidia chinensis HOM05D004263 ORTHO05D004931 4.6e-108 394.8 230 80.9
Gohir.A01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 6.1e-108 394.4 230 80.0
FAN02G3638 Fragaria x ananassa HOM05D004263 ORTHO05D004931 1.0e-107 393.7 229 80.3
Gorai.002G017100 Gossypium raimondii HOM05D004263 ORTHO05D004931 1.0e-107 393.7 230 80.4
Psat2g144400 Pisum sativum HOM05D004263 ORTHO05D004931 1.0e-107 393.7 230 78.7
CiPaw.03G169700 Carya illinoinensis HOM05D004263 ORTHO05D004931 1.8e-107 392.9 230 79.1
HanXRQChr07g0200651 Helianthus annuus HOM05D004263 ORTHO05D004931 2.3e-107 392.5 230 79.6
Gohir.D01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 3.0e-107 392.1 230 80.0
Lj3g0003932 Lotus japonicus HOM05D004263 ORTHO05D004931 3.0e-107 392.1 230 78.3
MD14G1065300 Malus domestica HOM05D004263 ORTHO05D004931 8.8e-107 390.6 230 80.4
Glyma.13G301100 Glycine max HOM05D004263 ORTHO05D004931 1.1e-106 390.2 230 78.7
Potri.013G147600 Populus trichocarpa HOM05D004263 ORTHO05D004931 1.5e-106 389.8 230 78.7
FAN14G1228 Fragaria x ananassa HOM05D004263 ORTHO05D004931 1.9e-106 389.4 229 79.9
Aqoxy1G01192 Aquilegia oxysepala HOM05D004263 ORTHO05D004931 3.3e-106 388.7 226 78.8
THA.LOC104809434 Tarenaya hassleriana HOM05D004263 ORTHO05D004931 3.3e-106 388.7 226 79.2
RcHm_v2.0_Chr2g0161771 Rosa chinensis HOM05D004263 ORTHO05D004931 4.3e-106 388.3 230 78.7
vmacro09293 Vaccinium macrocarpon HOM05D004263 ORTHO05D004931 4.3e-106 388.3 233 79.0
FvH4_6g44560 Fragaria vesca HOM05D004263 ORTHO05D004931 5.7e-106 387.9 230 78.7
ECA246G4434 Erigeron canadensis HOM05D004263 ORTHO05D004931 7.4e-106 387.5 230 78.7
A06p09160 Brassica napus HOM05D004263 ORTHO05D004931 1.3e-105 386.7 229 80.3
Aa31LG1G2150 Aethionema arabicum HOM05D004263 ORTHO05D004931 1.7e-105 386.3 239 77.4
MELO3C018764.2 Cucumis melo HOM05D004263 ORTHO05D004931 1.7e-105 386.3 229 78.6
C05p10740 Brassica napus HOM05D004263 ORTHO05D004931 8.2e-105 384.0 229 79.5
Sed0028127 Sechium edule HOM05D004263 ORTHO05D004931 8.2e-105 384.0 229 77.3
FAN09G1275 Fragaria x ananassa HOM05D004263 ORTHO05D004931 1.1e-104 383.6 229 78.2
Haze_13086 Corylus avellana HOM05D004263 ORTHO05D004931 1.4e-104 383.3 275 68.4
BolC5t29815H Brassica oleracea HOM05D004263 ORTHO05D004931 1.8e-104 382.9 229 79.5
BcaC05g25186 Brassica carinata HOM05D004263 ORTHO05D004931 2.4e-104 382.5 230 78.3
TPR.G26159 Trifolium pratense HOM05D004263 ORTHO05D004931 2.4e-104 382.5 230 76.5
Medtr8g063380 Medicago truncatula HOM05D004263 ORTHO05D004931 3.1e-104 382.1 230 76.5
BraA06t24102Z Brassica rapa HOM05D004263 ORTHO05D004931 4.1e-104 381.7 230 78.7
Thhalv10006686m.g Eutrema salsugineum HOM05D004263 ORTHO05D004931 4.1e-104 381.7 230 78.7
CsaV3_7G004120 Cucumis sativus L. HOM05D004263 ORTHO05D004931 5.3e-104 381.3 230 76.5
PGR142G2990 Punica granatum HOM05D004263 ORTHO05D004931 5.3e-104 381.3 230 76.1
VMungo1080G0385 Vigna mungo HOM05D004263 ORTHO05D004931 5.3e-104 381.3 230 77.0
CARHR012770 Cardamine hirsuta HOM05D004263 ORTHO05D004931 1.5e-103 379.8 230 78.3
Sp1g11070 Schrenkiella parvula HOM05D004263 ORTHO05D004931 2.0e-103 379.4 230 77.8
AT1G12470 Arabidopsis thaliana HOM05D004263 ORTHO05D004931 4.5e-103 378.3 230 78.3
Phvul.005G107700 Phaseolus vulgaris HOM05D004263 ORTHO05D004931 1.0e-102 377.1 230 76.1
Ca_01536_v3 Cicer arietinum L. HOM05D004263 ORTHO05D004931 2.2e-102 375.9 230 76.5
Carub.0001s1218 Capsella rubella HOM05D004263 ORTHO05D004931 3.8e-102 375.2 230 77.8
PSO801G0468 Papaver somniferum HOM05D004263 ORTHO05D004931 6.5e-102 374.4 231 75.3
HPP92_004167 Vanilla planifolia HOM05D004263 ORTHO05D004931 6.5e-102 374.4 230 72.6
BcaB03g13185 Brassica carinata HOM05D004263 ORTHO05D004931 1.4e-101 373.2 230 76.1
AL1G23830 Arabidopsis lyrata HOM05D004263 ORTHO05D004931 5.5e-101 371.3 230 76.1
A08p32810 Brassica napus HOM05D004263 ORTHO05D004931 9.4e-101 370.5 231 76.2
PSO339G5244 Papaver somniferum HOM05D004263 ORTHO05D004931 9.4e-101 370.5 231 74.5
Dinv23715 Davidia involucrata HOM05D004263 ORTHO05D004931 2.7e-100 369.0 204 82.8
Glyma.12G201100 Glycine max HOM05D004263 ORTHO05D004931 3.6e-100 368.6 230 76.1
Ah.11g047230 Amaranthus hybridus HOM05D004263 ORTHO05D004931 6.1e-100 367.9 230 74.8
AUR62034472 Chenopodium quinoa HOM05D004263 ORTHO05D004931 6.1e-100 367.9 230 74.8
CSS0035062 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 6.7e-99 364.4 230 75.2
Lj8C117G6 Lonicera japonica HOM05D004263 ORTHO05D004931 1.5e-98 363.2 206 83.0
Sc08g0004410 Simmondsia chinensis HOM05D004263 ORTHO05D004931 1.5e-98 363.2 230 74.3
C08p15450 Brassica napus HOM05D004263 ORTHO05D004931 1.3e-97 360.1 231 75.3
EL10As1g23122 Beta vulgaris HOM05D004263 ORTHO05D004931 2.4e-96 355.9 230 73.0
BraA08t35204Z Brassica rapa HOM05D004263 ORTHO05D004931 1.2e-95 353.6 233 73.8
Lj1C736T2 Lonicera japonica HOM05D004263 ORTHO05D004931 2.0e-95 352.8 204 82.8
Sabra13G0119200 Salix brachista HOM05D004263 ORTHO05D004931 2.0e-95 352.8 222 75.7
Lsat_1_v5_gn_3_39980 Lactuca sativa HOM05D004263 ORTHO05D004931 5.0e-94 348.2 207 78.3
CAN.G224.18 Capsicum annuum HOM05D004263 ORTHO05D004931 1.2e-92 343.6 229 73.4
ClCG02G001300 Citrullus lanatus HOM05D004263 ORTHO05D004931 2.7e-92 342.4 230 71.7
BcaC05g25136 Brassica carinata HOM05D004263 ORTHO05D004931 6.1e-92 341.3 207 78.3
CSS0039065 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 5.7e-90 334.7 232 71.6
SHI10474 Sapria himalayana HOM05D004263 ORTHO05D004931 9.7e-90 334.0 222 68.5
BolC8t49173H Brassica oleracea HOM05D004263 ORTHO05D004931 1.3e-89 333.6 215 73.5
Os08g0178100 Oryza sativa ssp. japonica HOM05D004263 ORTHO05D004931 2.4e-88 329.3 228 64.5
DCAR_009724 Daucus carota HOM05D004263 ORTHO05D004931 1.2e-87 327.0 232 70.7
Atru.chr6.3077 Acer truncatum HOM05D004263 ORTHO05D004931 8.5e-86 320.9 230 68.7
PGSC0003DMG400025399 Solanum tuberosum HOM05D004263 ORTHO05D004931 2.7e-84 315.8 178 82.6
AUR62041769 Chenopodium quinoa HOM05D004263 ORTHO05D004931 1.2e-82 310.5 230 65.2
CDE05G0585 Ceratophyllum demersum HOM05D004263 ORTHO05D004931 2.8e-81 305.8 230 63.9
Lalb_Chr22g0356351 Lupinus albus HOM05D004263 ORTHO05D004931 5.3e-80 301.6 176 78.4
Nn2g15850 Nelumbo nucifera HOM05D004263 ORTHO05D004931 1.9e-77 293.1 176 76.1
AagrBONN_evm.TU.Sc2ySwM_228.3812 Anthoceros agrestis HOM05D004263 ORTHO05D004931 6.8e-75 284.6 224 56.7
Mapoly0011s0120 Marchantia polymorpha HOM05D004263 ORTHO05D004931 2.0e-74 283.1 224 53.1
SMO239G0082 Selaginella moellendorffii HOM05D004263 ORTHO05D004931 7.0e-72 274.6 232 52.6
Pp3c14_1240 Physcomitrium patens HOM05D004263 ORTHO05D004931 1.6e-71 273.5 224 57.1
Cpa.g.sc34.89 Carica papaya HOM05D004263 ORTHO05D004931 1.9e-69 266.5 153 79.1
ATR0737G173 Amborella trichopoda HOM05D004263 ORTHO05D004931 7.5e-66 254.6 183 65.0
Oeu001692.1 Olea europaea HOM05D004263 ORTHO05D004931 7.5e-66 254.6 147 81.0
Medtr8g471030 Medicago truncatula HOM05D004263 ORTHO05D004931 3.5e-55 219.2 127 78.0
CBR_g40703 Chara braunii HOM05D004263 ORTHO05D004931 4.9e-25 119.0 110 47.3
Hma1.2p1_0565F.1_g179570 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 2.9e-17 93.2 58 72.4
Actinidia30490 Actinidia chinensis HOM05D004263 ORTHO05D004931 3.0e-14 83.2 58 65.5
Cfa022578 Carpinus fangiana HOM05D004263 ORTHO05D004931 6.7e-14 82.0 198 28.8
Cre07.g328550 Chlamydomonas reinhardtii HOM05D004263 ORTHO05D004931 2.1e-12 77.0 195 26.2
SEGI_32704 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 3.7e-12 76.3 48 62.5
arahy.Tifrunner.gnm1.ann1.J1BTWL Arachis hypogaea HOM05D004263 ORTHO05D004931 3.2e-08 63.2 31 90.3
TPR.G27092 Trifolium pratense HOM05D004263 ORTHO05D004931 3.2e-08 63.2 45 64.4


User provided reference genes

Program Settings