Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.1136 Avicennia marina HOM05D000983 ORTHO05D088001 1.0e-60 236.5 114 100.0
Migut.J01641 Erythranthe guttata HOM05D000983 ORTHO05D001922 1.2e-21 106.7 88 56.8
MSTRG.25284 Avicennia marina HOM05D000983 ORTHO05D001922 1.6e-21 106.3 88 58.0
SalBow8G1360 Salvia bowleyana HOM05D000983 ORTHO05D001922 2.7e-21 105.5 88 55.7
Actinidia15472 Actinidia chinensis HOM05D000983 ORTHO05D001922 3.5e-21 105.1 88 53.4
Actinidia17027 Actinidia chinensis HOM05D000983 ORTHO05D001922 6.0e-21 104.4 88 54.5
SalBow7G1781 Salvia bowleyana HOM05D000983 ORTHO05D001922 1.3e-20 103.2 88 52.3
Cpa.g.sc26.242 Carica papaya HOM05D000983 ORTHO05D001922 3.0e-20 102.1 88 53.4
Manes.05G141400 Manihot esculenta HOM05D000983 ORTHO05D001922 8.7e-20 100.5 88 52.3
Ciclev10001348m.g Citrus clementina HOM05D000983 ORTHO05D001922 1.9e-19 99.4 88 51.1
MD08G1006000 Malus domestica HOM05D000983 ORTHO05D001922 1.9e-19 99.4 88 51.1
Oeu060941.1 Olea europaea HOM05D000983 ORTHO05D001922 1.9e-19 99.4 88 55.7
CANSAT25G3388 Cannabis sativa HOM05D000983 ORTHO05D001922 2.5e-19 99.0 88 51.1
PGR142G4423 Punica granatum HOM05D000983 ORTHO05D001922 3.3e-19 98.6 100 48.0
Cc06_g08480 Coffea canephora HOM05D000983 ORTHO05D001922 4.3e-19 98.2 89 51.7
TWI56G1107 Tripterygium wilfordii HOM05D000983 ORTHO05D001922 4.3e-19 98.2 88 48.9
CARHR069670 Cardamine hirsuta HOM05D000983 ORTHO05D001922 5.6e-19 97.8 88 47.7
Haze_22732 Corylus avellana HOM05D000983 ORTHO05D001922 5.6e-19 97.8 88 48.9
MD15G1005200 Malus domestica HOM05D000983 ORTHO05D001922 5.6e-19 97.8 88 51.1
Eucgr.F03529 Eucalyptus grandis HOM05D000983 ORTHO05D001922 7.3e-19 97.4 88 50.0
Potri.002G014300 Populus trichocarpa HOM05D000983 ORTHO05D001922 7.3e-19 97.4 88 50.0
Thecc.08G054200 Theobroma cacao HOM05D000983 ORTHO05D001922 7.3e-19 97.4 88 50.0
Aa31LG4G6250 Aethionema arabicum HOM05D000983 ORTHO05D001922 1.6e-18 96.3 88 48.9
CiPaw.07G142000 Carya illinoinensis HOM05D000983 ORTHO05D001922 1.6e-18 96.3 74 56.8
Atru.chr13.188 Acer truncatum HOM05D000983 ORTHO05D001922 2.1e-18 95.9 88 50.0
EL10Ac1g02044 Beta vulgaris HOM05D000983 ORTHO05D001922 2.8e-18 95.5 75 57.3
Duzib093G2100 Durio zibethinus HOM05D000983 ORTHO05D001922 2.8e-18 95.5 88 48.9
CAN.G311.88 Capsicum annuum HOM05D000983 ORTHO05D001922 3.6e-18 95.1 88 52.3
Nitab4.5_0003280g0040 Nicotiana tabacum HOM05D000983 ORTHO05D001922 3.6e-18 95.1 88 48.9
Rhsim06G0009900 Rhododendron simsii HOM05D000983 ORTHO05D001922 3.6e-18 95.1 89 48.3
vmacro21841 Vaccinium macrocarpon HOM05D000983 ORTHO05D001922 3.6e-18 95.1 88 48.9
Lj4A802G107 Lonicera japonica HOM05D000983 ORTHO05D001922 4.8e-18 94.7 88 51.1
QL02p013395 Quercus lobata HOM05D000983 ORTHO05D001922 4.8e-18 94.7 88 48.9
Sp5g31260 Schrenkiella parvula HOM05D000983 ORTHO05D001922 4.8e-18 94.7 88 46.6
PGSC0003DMG400009891 Solanum tuberosum HOM05D000983 ORTHO05D001922 4.8e-18 94.7 88 52.3
AT1G76130 Arabidopsis thaliana HOM05D000983 ORTHO05D001922 6.2e-18 94.4 88 46.6
CiPaw.08G070100 Carya illinoinensis HOM05D000983 ORTHO05D001922 6.2e-18 94.4 87 48.3
BcaC08g47288 Brassica carinata HOM05D000983 ORTHO05D001922 8.1e-18 94.0 88 47.7
CSS0024586 Camellia sinensis var. sinensis HOM05D000983 ORTHO05D001922 8.1e-18 94.0 87 49.4
CDE06G0131 Ceratophyllum demersum HOM05D000983 ORTHO05D001922 8.1e-18 94.0 88 50.0
COL.COLO4_26062 Corchorus olitorius HOM05D000983 ORTHO05D001922 8.1e-18 94.0 74 54.1
A07p41700 Brassica napus HOM05D000983 ORTHO05D001922 1.1e-17 93.6 88 46.6
C06p50080 Brassica napus HOM05D000983 ORTHO05D001922 1.1e-17 93.6 88 46.6
BolC6t40047H Brassica oleracea HOM05D000983 ORTHO05D001922 1.1e-17 93.6 88 46.6
BraA07t31699Z Brassica rapa HOM05D000983 ORTHO05D001922 1.1e-17 93.6 88 46.6
Carub.0002s2301 Capsella rubella HOM05D000983 ORTHO05D001922 1.1e-17 93.6 88 46.6
AUR62036756 Chenopodium quinoa HOM05D000983 ORTHO05D001922 1.1e-17 93.6 89 50.6
DCAR_016745 Daucus carota HOM05D000983 ORTHO05D001922 1.1e-17 93.6 88 47.7
BcaC08g47107 Brassica carinata HOM05D000983 ORTHO05D001922 1.4e-17 93.2 88 45.5
BcaNung05115 Brassica carinata HOM05D000983 ORTHO05D001922 1.4e-17 93.2 88 45.5
CDE02G3461 Ceratophyllum demersum HOM05D000983 ORTHO05D001922 1.8e-17 92.8 88 47.7
Thhalv10018631m.g Eutrema salsugineum HOM05D000983 ORTHO05D001922 1.8e-17 92.8 88 45.5
unitig_0.g2095 Utricularia gibba HOM05D000983 ORTHO05D001922 1.8e-17 92.8 88 48.9
GSVIVG01008714001 Vitis vinifera HOM05D000983 ORTHO05D001922 1.8e-17 92.8 74 55.4
MBI05_g12851_MAGBIO Magnolia biondii HOM05D000983 ORTHO05D001922 2.4e-17 92.4 100 47.0
AL2G36170 Arabidopsis lyrata HOM05D000983 ORTHO05D001922 3.1e-17 92.0 88 45.5
CSS0008836 Camellia sinensis var. sinensis HOM05D000983 ORTHO05D001922 3.1e-17 92.0 74 54.1
Gohir.A05G255400 Gossypium hirsutum HOM05D000983 ORTHO05D001922 3.1e-17 92.0 88 46.6
Gorai.009G268400 Gossypium raimondii HOM05D000983 ORTHO05D001922 3.1e-17 92.0 88 46.6
Prupe.1G357800 Prunus persica HOM05D000983 ORTHO05D001922 3.1e-17 92.0 88 47.7
Solyc04g082090.3 Solanum lycopersicum HOM05D000983 ORTHO05D001922 3.1e-17 92.0 88 50.0
Ah.11g040570 Amaranthus hybridus HOM05D000983 ORTHO05D001922 4.0e-17 91.7 88 46.6
MELO3C017002.2 Cucumis melo HOM05D000983 ORTHO05D001922 4.0e-17 91.7 88 48.9
Gohir.D05G256900 Gossypium hirsutum HOM05D000983 ORTHO05D001922 4.0e-17 91.7 88 46.6
THA.LOC104813768 Tarenaya hassleriana HOM05D000983 ORTHO05D001922 4.0e-17 91.7 74 55.4
Lj5g0018308 Lotus japonicus HOM05D000983 ORTHO05D001922 5.3e-17 91.3 88 47.7
Nn5g30882 Nelumbo nucifera HOM05D000983 ORTHO05D001922 9.0e-17 90.5 88 46.6
Oeu027610.1 Olea europaea HOM05D000983 ORTHO05D001922 9.0e-17 90.5 88 52.3
Peaxi162Scf00174g00137 Petunia axillaris HOM05D000983 ORTHO05D001922 9.0e-17 90.5 89 49.4
Sabra02G0011400 Salix brachista HOM05D000983 ORTHO05D001922 9.0e-17 90.5 86 48.8
Sopen04g035730 Solanum pennellii HOM05D000983 ORTHO05D001922 1.2e-16 90.1 88 48.9
AUR62013843 Chenopodium quinoa HOM05D000983 ORTHO05D001922 1.5e-16 89.7 74 54.1
AUR62036762 Chenopodium quinoa HOM05D000983 ORTHO05D001922 1.5e-16 89.7 74 54.1
HanXRQChr08g0215691 Helianthus annuus HOM05D000983 ORTHO05D001922 1.5e-16 89.7 89 47.2
Hma1.2p1_1260F.1_g270970 Hydrangea macrophylla HOM05D000983 ORTHO05D001922 1.5e-16 89.7 100 45.0
ATR0661G021 Amborella trichopoda HOM05D000983 ORTHO05D001922 2.0e-16 89.4 88 50.0
Medtr1g026170 Medicago truncatula HOM05D000983 ORTHO05D001922 2.6e-16 89.0 88 44.3
SEGI_04432 Sequoiadendron giganteum HOM05D000983 ORTHO05D001922 2.6e-16 89.0 88 44.3
Glyma.14G222600 Glycine max HOM05D000983 ORTHO05D001922 3.4e-16 88.6 88 44.3
Lalb_Chr19g0131631 Lupinus albus HOM05D000983 ORTHO05D001922 3.4e-16 88.6 74 52.7
Psat6g001000 Pisum sativum HOM05D000983 ORTHO05D001922 3.4e-16 88.6 88 45.5
TPR.G26412 Trifolium pratense HOM05D000983 ORTHO05D001922 3.4e-16 88.6 88 45.5
PSO675G0993 Papaver somniferum HOM05D000983 ORTHO05D001922 4.5e-16 88.2 88 48.9
Phvul.001G001900 Phaseolus vulgaris HOM05D000983 ORTHO05D001922 4.5e-16 88.2 88 44.3
Sc26g0004540 Simmondsia chinensis HOM05D000983 ORTHO05D001922 4.5e-16 88.2 88 45.5
Dinv31909 Davidia involucrata HOM05D000983 ORTHO05D001922 5.8e-16 87.8 88 50.0
PSO541G6376 Papaver somniferum HOM05D000983 ORTHO05D001922 9.9e-16 87.0 88 47.7
Ca_13488_v3 Cicer arietinum L. HOM05D000983 ORTHO05D001922 1.3e-15 86.7 88 44.3
CsaV3_4G037030 Cucumis sativus L. HOM05D000983 ORTHO05D001922 1.3e-15 86.7 88 46.6
Gohir.A06G000800 Gossypium hirsutum HOM05D000983 ORTHO05D001922 1.3e-15 86.7 88 46.6
VMungo0647G0618 Vigna mungo HOM05D000983 ORTHO05D001922 2.2e-15 85.9 88 44.3
FvH4_2g37840 Fragaria vesca HOM05D000983 ORTHO05D001922 2.9e-15 85.5 74 51.4
Aqoxy6G01875 Aquilegia oxysepala HOM05D000983 ORTHO05D001922 4.9e-15 84.7 88 46.6
ECA233G4007 Erigeron canadensis HOM05D000983 ORTHO05D001922 4.9e-15 84.7 89 44.9
Lsat_1_v5_gn_8_29040 Lactuca sativa HOM05D000983 ORTHO05D001922 4.9e-15 84.7 89 43.8
Gorai.010G001000 Gossypium raimondii HOM05D000983 ORTHO05D001922 6.4e-15 84.3 88 46.6
RcHm_v2.0_Chr6g0303841 Rosa chinensis HOM05D000983 ORTHO05D001922 1.1e-14 83.6 100 42.0
FAN15G0491 Fragaria x ananassa HOM05D000983 ORTHO05D001922 1.9e-14 82.8 74 51.4
Hund05141 Selenicereus undatus HOM05D000983 ORTHO05D001922 2.4e-14 82.4 111 38.7
Lj4A16G126 Lonicera japonica HOM05D000983 ORTHO05D001922 3.2e-14 82.0 88 47.7
SGA_v2.0_scaffold275G46549 Striga asiatica HOM05D000983 ORTHO05D001922 3.2e-14 82.0 76 53.9
HPP92_014998 Vanilla planifolia HOM05D000983 ORTHO05D001922 3.2e-14 82.0 88 42.0
arahy.Tifrunner.gnm1.ann1.2SN1MA Arachis hypogaea HOM05D000983 ORTHO05D001922 3.0e-12 75.5 90 40.0
Zm00001eb084540 Zea mays HOM05D000983 ORTHO05D001922 3.9e-12 75.1 88 42.0
arahy.Tifrunner.gnm1.ann1.5SXX56 Arachis hypogaea HOM05D000983 ORTHO05D001922 8.7e-12 73.9 90 38.9
Pp3c2_3670 Physcomitrium patens HOM05D000983 ORTHO05D001922 1.3e-10 70.1 91 34.1
AUR62013844 Chenopodium quinoa HOM05D000983 ORTHO05D001922 8.1e-10 67.4 52 59.6
MCO11G075 Micromonas commoda HOM05D000983 ORTHO05D001922 8.4e-07 57.4 74 31.1
MCO13G310 Micromonas commoda HOM05D000983 ORTHO05D006794 9.3e-06 53.9 91 31.9


User provided reference genes

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