Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.10773 Avicennia marina HOM05D006173 ORTHO05D007685 4.5e-250 867.5 438 100.0
Migut.K00169 Erythranthe guttata HOM05D006173 ORTHO05D007685 2.2e-220 768.8 438 88.1
Oeu060754.2 Olea europaea HOM05D006173 ORTHO05D007685 3.1e-190 668.7 474 70.5
Dinv10196 Davidia involucrata HOM05D006173 ORTHO05D007685 8.3e-188 660.6 441 74.4
Atru.chr1.1516 Acer truncatum HOM05D006173 ORTHO05D007685 1.7e-185 652.9 444 73.4
PGSC0003DMG400017881 Solanum tuberosum HOM05D006173 ORTHO05D007685 2.5e-184 649.0 437 72.3
Prupe.7G021600 Prunus persica HOM05D006173 ORTHO05D007685 2.1e-183 646.0 441 73.2
Manes.10G077600 Manihot esculenta HOM05D006173 ORTHO05D007685 4.7e-183 644.8 443 72.0
Sopen08g011280 Solanum pennellii HOM05D006173 ORTHO05D007685 1.8e-182 642.9 437 71.6
Actinidia17973 Actinidia chinensis HOM05D006173 ORTHO05D007685 2.4e-182 642.5 442 69.2
Ciclev10011725m.g Citrus clementina HOM05D006173 ORTHO05D007685 4.0e-182 641.7 441 68.9
TWI74G0774 Tripterygium wilfordii HOM05D006173 ORTHO05D007685 4.0e-182 641.7 447 72.9
Cfa019941 Carpinus fangiana HOM05D006173 ORTHO05D007685 5.2e-182 641.3 446 70.4
Solyc08g016801.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 2.0e-181 639.4 437 71.2
Gohir.D11G320800 Gossypium hirsutum HOM05D006173 ORTHO05D007685 3.4e-181 638.6 441 70.5
Gorai.007G351000 Gossypium raimondii HOM05D006173 ORTHO05D007685 5.8e-181 637.9 441 70.3
Thecc.05G131000 Theobroma cacao HOM05D006173 ORTHO05D007685 2.9e-180 635.6 441 70.3
Gohir.A11G305400 Gossypium hirsutum HOM05D006173 ORTHO05D007685 8.4e-180 634.0 441 69.8
SalBow1G0987 Salvia bowleyana HOM05D006173 ORTHO05D007685 1.4e-179 633.3 466 69.3
CiPaw.10G124100 Carya illinoinensis HOM05D006173 ORTHO05D007685 5.4e-179 631.3 446 71.1
Hma1.2p1_0044F.1_g026020 Hydrangea macrophylla HOM05D006173 ORTHO05D007685 1.6e-178 629.8 457 66.3
Cc06_g22820 Coffea canephora HOM05D006173 ORTHO05D007685 4.6e-178 628.2 459 66.4
Duzib106G1718 Durio zibethinus HOM05D006173 ORTHO05D007685 1.7e-177 626.3 441 69.2
Cpa.g.sc33.197 Carica papaya HOM05D006173 ORTHO05D007685 1.5e-176 623.2 447 67.3
Potri.016G030400 Populus trichocarpa HOM05D006173 ORTHO05D007685 5.6e-176 621.3 443 67.0
FvH4_7g04320 Fragaria vesca HOM05D006173 ORTHO05D007685 4.7e-175 618.2 439 70.8
PGR142G0634 Punica granatum HOM05D006173 ORTHO05D007685 6.2e-175 617.8 447 68.9
PSO541G4485 Papaver somniferum HOM05D006173 ORTHO05D007685 8.1e-175 617.5 440 68.6
MELO3C009724.2 Cucumis melo HOM05D006173 ORTHO05D007685 6.9e-174 614.4 445 70.6
PSO675G1003 Papaver somniferum HOM05D006173 ORTHO05D007685 3.4e-173 612.1 440 68.9
Sed0007984 Sechium edule HOM05D006173 ORTHO05D007685 3.8e-172 608.6 446 70.2
EL10Ac3g07343 Beta vulgaris HOM05D006173 ORTHO05D007685 1.1e-171 607.1 444 65.8
AT3G56900 Arabidopsis thaliana HOM05D006173 ORTHO05D007685 1.6e-170 603.2 442 69.0
Eucgr.K01689 Eucalyptus grandis HOM05D006173 ORTHO05D007685 3.5e-170 602.1 451 66.1
AL5G38300 Arabidopsis lyrata HOM05D006173 ORTHO05D007685 4.6e-170 601.7 446 68.8
THA.LOC104814894 Tarenaya hassleriana HOM05D006173 ORTHO05D007685 6.0e-170 601.3 440 67.7
Glyma.19G125000 Glycine max HOM05D006173 ORTHO05D007685 1.3e-169 600.1 449 67.3
Carub.0005s2364 Capsella rubella HOM05D006173 ORTHO05D007685 2.3e-169 599.4 447 68.0
Sp5g05690 Schrenkiella parvula HOM05D006173 ORTHO05D007685 3.9e-169 598.6 446 68.2
Peaxi162Scf00937g00117 Petunia axillaris HOM05D006173 ORTHO05D007685 1.5e-168 596.7 422 67.5
CARHR167050 Cardamine hirsuta HOM05D006173 ORTHO05D007685 5.6e-168 594.7 442 68.3
Lj1g0020171 Lotus japonicus HOM05D006173 ORTHO05D007685 2.8e-167 592.4 451 64.1
Glyma.03G120400 Glycine max HOM05D006173 ORTHO05D007685 1.1e-166 590.5 449 65.3
ECA247G0085 Erigeron canadensis HOM05D006173 ORTHO05D007685 1.2e-165 587.0 438 64.6
CsaV3_3G039830 Cucumis sativus L. HOM05D006173 ORTHO05D007685 2.6e-165 585.9 449 64.8
Haze_20298 Corylus avellana HOM05D006173 ORTHO05D007685 1.3e-164 583.6 463 61.8
ClCG10G016510 Citrullus lanatus HOM05D006173 ORTHO05D007685 2.9e-164 582.4 485 61.2
CSS0033436 Camellia sinensis var. sinensis HOM05D006173 ORTHO05D007685 3.8e-164 582.0 431 68.2
Thhalv10005968m.g Eutrema salsugineum HOM05D006173 ORTHO05D007685 8.4e-164 580.9 446 63.5
BcaC07g40109 Brassica carinata HOM05D006173 ORTHO05D007685 1.1e-163 580.5 448 62.1
C08p32150 Brassica napus HOM05D006173 ORTHO05D007685 1.1e-163 580.5 453 61.8
BolC8t50833H Brassica oleracea HOM05D006173 ORTHO05D007685 1.9e-163 579.7 453 61.4
A09p49770 Brassica napus HOM05D006173 ORTHO05D007685 7.1e-163 577.8 453 61.1
BraA09t40430Z Brassica rapa HOM05D006173 ORTHO05D007685 7.1e-163 577.8 453 61.1
Medtr7g088540 Medicago truncatula HOM05D006173 ORTHO05D007685 1.6e-162 576.6 457 62.1
Sabra16G0033900 Salix brachista HOM05D006173 ORTHO05D007685 2.1e-162 576.2 493 58.6
Zm00001eb405260 Zea mays HOM05D006173 ORTHO05D007685 3.5e-162 575.5 443 61.9
BcaC07g40002 Brassica carinata HOM05D006173 ORTHO05D007685 6.0e-162 574.7 447 62.0
arahy.Tifrunner.gnm1.ann1.NS6SL1 Arachis hypogaea HOM05D006173 ORTHO05D007685 1.8e-161 573.2 458 61.1
FAN10G0117 Fragaria x ananassa HOM05D006173 ORTHO05D007685 3.9e-161 572.0 450 63.3
Phvul.001G116600 Phaseolus vulgaris HOM05D006173 ORTHO05D007685 3.9e-161 572.0 447 62.4
SGA_v2.0_scaffold106G30556 Striga asiatica HOM05D006173 ORTHO05D007685 1.6e-159 566.6 455 65.1
VMungo0331G1996 Vigna mungo HOM05D006173 ORTHO05D007685 1.4e-158 563.5 447 61.7
Os12g0129400 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 3.1e-158 562.4 441 60.1
Os11g0132700 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 2.6e-157 559.3 441 59.4
FAN01G1644 Fragaria x ananassa HOM05D006173 ORTHO05D007685 8.7e-153 544.3 543 53.4
Lsat_1_v5_gn_9_32341 Lactuca sativa HOM05D006173 ORTHO05D007685 1.1e-152 543.9 438 60.3
arahy.Tifrunner.gnm1.ann1.TSE1DU Arachis hypogaea HOM05D006173 ORTHO05D007685 9.6e-152 540.8 463 58.5
Aa31LG10G11760 Aethionema arabicum HOM05D006173 ORTHO05D007685 8.2e-151 537.7 516 53.7
SEGI_22413 Sequoiadendron giganteum HOM05D006173 ORTHO05D007685 9.0e-150 534.3 461 58.6
MD12G1112000 Malus domestica HOM05D006173 ORTHO05D007685 4.5e-149 531.9 527 54.1
HanXRQChr14g0457301 Helianthus annuus HOM05D006173 ORTHO05D007685 8.4e-148 527.7 437 60.6
AUR62020996 Chenopodium quinoa HOM05D006173 ORTHO05D007685 1.1e-147 527.3 435 59.8
TPR.G27968 Trifolium pratense HOM05D006173 ORTHO05D007685 7.1e-147 524.6 413 63.2
FAN06G1001 Fragaria x ananassa HOM05D006173 ORTHO05D007685 1.3e-145 520.4 460 58.7
Hund19061 Selenicereus undatus HOM05D006173 ORTHO05D007685 3.1e-142 509.2 425 59.3
TAR623G0939 Trochodendron aralioides HOM05D006173 ORTHO05D007685 2.6e-141 506.1 403 65.3
vmacro07758 Vaccinium macrocarpon HOM05D006173 ORTHO05D007685 3.2e-139 499.2 484 53.5
CDE02G3082 Ceratophyllum demersum HOM05D006173 ORTHO05D007685 3.7e-135 485.7 438 54.8
Sc19g0007880 Simmondsia chinensis HOM05D006173 ORTHO05D007685 2.0e-133 479.9 399 60.7
Aqoxy3G01734 Aquilegia oxysepala HOM05D006173 ORTHO05D007685 7.9e-130 468.0 340 67.6
AUR62018437 Chenopodium quinoa HOM05D006173 ORTHO05D007685 1.6e-117 427.2 404 55.4
RhsimUnG0020600 Rhododendron simsii HOM05D006173 ORTHO05D007685 4.5e-117 425.6 447 52.1
Mapoly0010s0124 Marchantia polymorpha HOM05D006173 ORTHO05D007685 2.9e-116 422.9 478 45.6
Psat3g082320 Pisum sativum HOM05D006173 ORTHO05D007685 5.5e-115 418.7 359 61.3
SMO116G0186 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 5.7e-112 408.7 460 46.1
SMO133G0039 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 7.5e-112 408.3 460 46.1
Solyc08g016808.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 1.0e-108 397.9 329 63.2
MBI19_g25019_MAGBIO Magnolia biondii HOM05D006173 ORTHO05D007685 8.0e-106 388.3 390 54.9
Pp3c11_18220 Physcomitrium patens HOM05D006173 ORTHO05D007685 7.0e-102 375.2 457 41.6
GSVIVG01025850001 Vitis vinifera HOM05D006173 ORTHO05D007685 9.8e-96 354.8 206 79.1
VMungo1383G1641 Vigna mungo HOM05D006173 ORTHO05D007685 1.3e-95 354.4 428 48.1
Nitab4.5_0003840g0020 Nicotiana tabacum HOM05D006173 ORTHO05D007685 3.7e-95 352.8 272 63.2
Nitab4.5_0000211g0120 Nicotiana tabacum HOM05D006173 ORTHO05D007685 3.3e-91 339.7 260 65.0
MD14G1101100 Malus domestica HOM05D006173 ORTHO05D007685 2.8e-90 336.7 209 75.6
Ca_08352_v3 Cicer arietinum L. HOM05D006173 ORTHO05D007685 1.2e-88 331.3 300 57.3
RcHm_v2.0_Chr1g0329271 Rosa chinensis HOM05D006173 ORTHO05D007685 3.2e-86 323.2 195 77.4
Lalb_Chr22g0358001 Lupinus albus HOM05D006173 ORTHO05D007685 2.0e-85 320.5 195 75.4
ATR0307G134 Amborella trichopoda HOM05D006173 ORTHO05D007685 1.6e-82 310.8 196 71.9
QL07p014498 Quercus lobata HOM05D006173 ORTHO05D007685 2.8e-82 310.1 166 84.3
HPP92_002170 Vanilla planifolia HOM05D006173 ORTHO05D007685 2.3e-76 290.4 166 77.7
SMO069G0001 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 6.2e-74 282.3 227 55.9
Lj1A24G66 Lonicera japonica HOM05D006173 ORTHO05D007685 1.8e-73 280.8 151 84.8
RcHm_v2.0_Chr1g0329281 Rosa chinensis HOM05D006173 ORTHO05D007685 3.7e-71 273.1 225 58.2
Lj1A24G67 Lonicera japonica HOM05D006173 ORTHO05D007685 9.2e-70 268.5 264 55.7
FAN03G1994 Fragaria x ananassa HOM05D006173 ORTHO05D007685 1.6e-69 267.7 233 56.7
Solyc08g036600.3 Solanum lycopersicum HOM05D006173 ORTHO05D007685 5.1e-68 262.7 203 59.1
unitig_46.g18486 Utricularia gibba HOM05D006173 ORTHO05D007685 1.1e-65 255.0 182 67.6
Lalb_Chr22g0357991 Lupinus albus HOM05D006173 ORTHO05D007685 1.9e-62 244.2 236 52.5
MD14G1101000 Malus domestica HOM05D006173 ORTHO05D007685 5.4e-62 242.7 248 51.6
CANSAT64G0701 Cannabis sativa HOM05D006173 ORTHO05D007685 6.0e-61 239.2 132 83.3
ATR0307G100 Amborella trichopoda HOM05D006173 ORTHO05D007685 3.6e-58 229.9 234 49.6
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 3.4e-56 223.4 207 54.6
DCAR_020632 Daucus carota HOM05D002466 ORTHO05D002668 9.9e-56 221.9 186 58.1
QL07p014493 Quercus lobata HOM05D006173 ORTHO05D007685 1.1e-51 208.4 166 57.2
SGA_v2.0_scaffold106G30559 Striga asiatica HOM05D000268 ORTHO05D000261 8.1e-50 202.2 342 40.4
GSVIVG01025851001 Vitis vinifera HOM05D006173 ORTHO05D007685 7.6e-48 195.7 184 53.3
CBR_g54315 Chara braunii HOM05D006173 ORTHO05D007685 2.1e-45 187.6 336 34.2
Nitab4.5_0000275g0010 Nicotiana tabacum HOM05D006173 ORTHO05D007685 6.9e-41 172.6 85 87.1
TAR623G0990 Trochodendron aralioides HOM05D006173 ORTHO05D007685 5.8e-40 169.5 97 82.5
Nitab4.5_0000211g0140 Nicotiana tabacum HOM05D006173 ORTHO05D007685 1.0e-31 142.1 85 76.5
PRCOL_00002577 Prasinoderma coloniale HOM05D006173 ORTHO05D007685 9.3e-30 135.6 276 29.3
Nitab4.5_0003840g0030 Nicotiana tabacum HOM05D006173 ORTHO05D007685 2.1e-29 134.4 70 82.9
Lj2A730T36 Lonicera japonica HOM05D006173 ORTHO05D007685 7.2e-22 109.4 239 35.6
Lsat_1_v5_gn_4_93961 Lactuca sativa HOM05D006173 ORTHO05D007685 5.9e-16 89.7 53 73.6
Lj2A730T35 Lonicera japonica HOM05D006173 ORTHO05D007685 1.0e-15 89.0 51 80.4
Os12g0131300 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 5.5e-14 83.2 64 59.4
Cre10.g466300 Chlamydomonas reinhardtii HOM05D006173 ORTHO05D007685 8.5e-07 59.3 258 29.5


User provided reference genes

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