Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.10519 Avicennia marina HOM05D003317 ORTHO05D003696 0.0e+00 1562.4 804 100.0
Migut.L01559 Erythranthe guttata HOM05D003317 ORTHO05D003696 7.8e-200 701.4 759 55.2
Oeu063419.1 Olea europaea HOM05D003317 ORTHO05D003696 1.9e-153 547.4 773 48.4
SGA_v2.0_scaffold21G09482 Striga asiatica HOM05D003317 ORTHO05D003696 4.7e-152 542.7 769 47.7
Cc06_g12060 Coffea canephora HOM05D003317 ORTHO05D003696 2.1e-120 437.6 776 41.0
Dinv42387 Davidia involucrata HOM05D003317 ORTHO05D003696 2.8e-120 437.2 814 40.0
CAN.G498.3 Capsicum annuum HOM05D003317 ORTHO05D003696 1.5e-118 431.4 803 40.2
Peaxi162Scf00127g00131 Petunia axillaris HOM05D003317 ORTHO05D003696 3.4e-118 430.3 639 44.1
Lj7A686T70 Lonicera japonica HOM05D003317 ORTHO05D003696 2.4e-116 424.1 847 37.0
Nitab4.5_0002966g0040 Nicotiana tabacum HOM05D003317 ORTHO05D003696 5.4e-116 422.9 773 40.6
CAN.G63.8 Capsicum annuum HOM05D003317 ORTHO05D003696 3.5e-115 420.2 800 39.8
Nitab4.5_0000343g0140 Nicotiana tabacum HOM05D003317 ORTHO05D003696 3.5e-115 420.2 773 40.0
Rhsim03G0227900 Rhododendron simsii HOM05D003317 ORTHO05D003696 1.0e-114 418.7 906 37.5
Sopen00g008950 Solanum pennellii HOM05D003317 ORTHO05D003696 2.3e-114 417.5 781 39.4
Sopen07g021250 Solanum pennellii HOM05D003317 ORTHO05D003696 2.3e-114 417.5 781 39.4
Actinidia29929 Actinidia chinensis HOM05D003317 ORTHO05D003696 2.9e-114 417.2 872 38.8
Cfa002996 Carpinus fangiana HOM05D003317 ORTHO05D003696 2.3e-111 407.5 789 39.8
CiPaw.03G207100 Carya illinoinensis HOM05D003317 ORTHO05D003696 3.2e-108 397.1 789 39.0
Duzib168G0118 Durio zibethinus HOM05D003317 ORTHO05D003696 5.4e-108 396.4 582 43.3
Haze_26007 Corylus avellana HOM05D003317 ORTHO05D003696 1.2e-104 385.2 796 39.1
Prupe.7G199800 Prunus persica HOM05D003317 ORTHO05D003696 1.1e-103 382.1 803 37.2
TAR626G1699 Trochodendron aralioides HOM05D003317 ORTHO05D003696 2.6e-102 377.5 789 38.3
TAR626G1452 Trochodendron aralioides HOM05D003317 ORTHO05D003696 5.8e-102 376.3 790 38.4
RcHm_v2.0_Chr2g0094821 Rosa chinensis HOM05D003317 ORTHO05D003696 1.3e-101 375.2 764 36.6
Cpa.g.sc28.54 Carica papaya HOM05D003317 ORTHO05D003696 4.9e-101 373.2 754 37.0
Sabra06G0111300 Salix brachista HOM05D003317 ORTHO05D003696 1.4e-100 371.7 799 37.4
vmacro06337 Vaccinium macrocarpon HOM05D003317 ORTHO05D003696 3.2e-100 370.5 564 42.6
arahy.Tifrunner.gnm1.ann1.MFQ8D7 Arachis hypogaea HOM05D003317 ORTHO05D003696 4.1e-100 370.2 616 39.6
MD02G1090200 Malus domestica HOM05D003317 ORTHO05D003696 2.1e-99 367.9 551 43.6
Potri.006G142200 Populus trichocarpa HOM05D003317 ORTHO05D003696 3.5e-99 367.1 775 36.4
GSVIVG01015088001 Vitis vinifera HOM05D003317 ORTHO05D003696 4.6e-99 366.7 612 41.8
Sc18g0002500 Simmondsia chinensis HOM05D003317 ORTHO05D003696 6.0e-99 366.3 793 36.4
Lsat_1_v5_gn_7_35060 Lactuca sativa HOM05D003317 ORTHO05D003696 1.3e-98 365.2 754 36.5
Gohir.D06G075100 Gossypium hirsutum HOM05D003317 ORTHO05D003696 1.7e-98 364.8 623 40.3
Hund08778 Selenicereus undatus HOM05D003317 ORTHO05D003696 1.7e-98 364.8 761 37.5
MD15G1216800 Malus domestica HOM05D003317 ORTHO05D003696 2.3e-98 364.4 709 38.4
Gorai.010G087700 Gossypium raimondii HOM05D003317 ORTHO05D003696 3.0e-98 364.0 581 42.0
VMungo1309G0541 Vigna mungo HOM05D003317 ORTHO05D003696 3.9e-98 363.6 372 51.6
Manes.16G095800 Manihot esculenta HOM05D003317 ORTHO05D003696 6.6e-98 362.8 566 40.8
arahy.Tifrunner.gnm1.ann1.81HHLD Arachis hypogaea HOM05D003317 ORTHO05D003696 8.6e-98 362.5 612 39.5
TWI34G1043 Tripterygium wilfordii HOM05D003317 ORTHO05D003696 8.6e-98 362.5 571 40.1
Phvul.009G227500 Phaseolus vulgaris HOM05D003317 ORTHO05D003696 3.3e-97 360.5 512 42.4
PGSC0003DMG400013008 Solanum tuberosum HOM05D003317 ORTHO05D003696 3.3e-97 360.5 930 33.5
Gohir.A06G076100 Gossypium hirsutum HOM05D003317 ORTHO05D003696 7.3e-97 359.4 556 42.1
Thecc.09G078000 Theobroma cacao HOM05D003317 ORTHO05D003696 7.3e-97 359.4 507 45.4
COL.COLO4_18104 Corchorus olitorius HOM05D003317 ORTHO05D003696 6.2e-96 356.3 509 43.2
DCAR_028330 Daucus carota HOM05D003317 ORTHO05D003696 1.1e-95 355.5 450 47.6
Glyma.15G177400 Glycine max HOM05D003317 ORTHO05D003696 1.1e-95 355.5 603 39.6
QL11p000685 Quercus lobata HOM05D003317 ORTHO05D003696 2.3e-95 354.4 580 42.9
FAN19G2419 Fragaria x ananassa HOM05D003317 ORTHO05D003696 3.1e-95 354.0 333 55.6
FvH4_1g08600 Fragaria vesca HOM05D003317 ORTHO05D003696 2.0e-94 351.3 347 53.9
Lalb_Chr23g0276391 Lupinus albus HOM05D003317 ORTHO05D003696 7.6e-94 349.4 732 36.6
FAN26G0708 Fragaria x ananassa HOM05D003317 ORTHO05D003696 6.4e-93 346.3 333 54.4
Ciclev10007604m.g Citrus clementina HOM05D003317 ORTHO05D003696 8.4e-93 345.9 562 41.6
Medtr2g041610 Medicago truncatula HOM05D003317 ORTHO05D003696 8.4e-93 345.9 329 55.9
FAN28G0340 Fragaria x ananassa HOM05D003317 ORTHO05D003696 5.4e-92 343.2 333 54.1
Ca_23417_v3 Cicer arietinum L. HOM05D003317 ORTHO05D003696 4.6e-91 340.1 419 47.3
Eucgr.C00817 Eucalyptus grandis HOM05D003317 ORTHO05D003696 4.6e-91 340.1 610 38.0
FAN23G1713 Fragaria x ananassa HOM05D003317 ORTHO05D003696 4.6e-91 340.1 333 53.8
Atru.chr7.1699 Acer truncatum HOM05D003317 ORTHO05D003696 6.0e-91 339.7 575 41.7
THA.LOC104815331 Tarenaya hassleriana HOM05D003317 ORTHO05D003696 6.0e-91 339.7 821 33.3
Lj6g0021845 Lotus japonicus HOM05D003317 ORTHO05D003696 1.3e-90 338.6 404 46.8
Psat1g134160 Pisum sativum HOM05D003317 ORTHO05D003696 5.1e-90 336.7 434 45.2
CANSAT56G0327 Cannabis sativa HOM05D003317 ORTHO05D003696 6.6e-90 336.3 584 39.6
PGR142G0733 Punica granatum HOM05D003317 ORTHO05D003696 1.9e-89 334.7 551 40.7
Carub.0003s2717 Capsella rubella HOM05D003317 ORTHO05D003696 7.3e-89 332.8 574 39.7
ECA240G4381 Erigeron canadensis HOM05D003317 ORTHO05D003696 1.6e-88 331.6 327 50.2
TPR.G28585 Trifolium pratense HOM05D003317 ORTHO05D003696 1.6e-88 331.6 406 48.3
TAR624G0435 Trochodendron aralioides HOM05D003317 ORTHO05D003696 3.1e-87 327.4 321 53.9
FAN26G2208 Fragaria x ananassa HOM05D003317 ORTHO05D003696 4.0e-87 327.0 791 33.9
HanXRQChr09g0237821 Helianthus annuus HOM05D003317 ORTHO05D003696 2.0e-86 324.7 407 45.0
MBI19_g11829_MAGBIO Magnolia biondii HOM05D003317 ORTHO05D003696 1.7e-85 321.6 580 38.6
EL10Ac8g19064 Beta vulgaris HOM05D003317 ORTHO05D003696 2.2e-85 321.2 513 40.4
Nn6g35618 Nelumbo nucifera HOM05D003317 ORTHO05D003696 4.2e-84 317.0 781 36.0
AL3G43680 Arabidopsis lyrata HOM05D003317 ORTHO05D003696 7.1e-84 316.2 581 39.4
Sp3g24620 Schrenkiella parvula HOM05D003317 ORTHO05D003696 1.7e-82 311.6 582 38.7
Thhalv10002406m.g Eutrema salsugineum HOM05D003317 ORTHO05D003696 3.9e-82 310.5 571 38.0
AT2G06040 Arabidopsis thaliana HOM05D003317 ORTHO05D003696 5.1e-82 310.1 560 38.2
ClCG03G015120 Citrullus lanatus HOM05D003317 ORTHO05D003696 5.1e-82 310.1 809 34.6
Aa31sc133G60 Aethionema arabicum HOM05D003317 ORTHO05D003696 6.6e-82 309.7 792 33.5
VMungo1215G0865 Vigna mungo HOM05D003317 ORTHO05D003696 2.5e-81 307.8 339 51.3
BcaC06g35953 Brassica carinata HOM05D003317 ORTHO05D003696 5.6e-81 306.6 341 49.3
Phvul.003G131200 Phaseolus vulgaris HOM05D003317 ORTHO05D003696 4.8e-80 303.5 339 51.3
CARHR103720 Cardamine hirsuta HOM05D003317 ORTHO05D003696 6.2e-80 303.1 341 47.8
A07p06270 Brassica napus HOM05D003317 ORTHO05D003696 8.1e-80 302.8 342 48.5
BraA07t28422Z Brassica rapa HOM05D003317 ORTHO05D003696 1.8e-79 301.6 345 49.0
BcaB06g26884 Brassica carinata HOM05D003317 ORTHO05D003696 2.0e-78 298.1 562 38.4
C07p09320 Brassica napus HOM05D003317 ORTHO05D003696 9.9e-78 295.8 344 48.3
BolC7t41350H Brassica oleracea HOM05D003317 ORTHO05D003696 9.9e-78 295.8 344 48.3
Glyma.17G049600 Glycine max HOM05D003317 ORTHO05D003696 2.2e-77 294.7 333 50.2
HPP92_004371 Vanilla planifolia HOM05D003317 ORTHO05D003696 2.2e-77 294.7 504 37.3
SHI33751 Sapria himalayana HOM05D003317 ORTHO05D003696 3.8e-77 293.9 441 41.0
Sed0002159 Sechium edule HOM05D003317 ORTHO05D003696 4.9e-77 293.5 648 33.5
CsaV3_1G040990 Cucumis sativus L. HOM05D003317 ORTHO05D003696 8.4e-77 292.7 616 36.4
Thecc.09G063600 Theobroma cacao HOM05D003317 ORTHO05D003696 8.4e-77 292.7 354 48.0
Aqoxy7G03984 Aquilegia oxysepala HOM05D003317 ORTHO05D003696 1.1e-76 292.4 771 32.8
AUR62025246 Chenopodium quinoa HOM05D003317 ORTHO05D003696 2.4e-76 291.2 351 47.0
Sed0023098 Sechium edule HOM05D003317 ORTHO05D003696 1.0e-74 285.8 289 49.1
Lalb_Chr07g0181161 Lupinus albus HOM05D003317 ORTHO05D003696 5.1e-74 283.5 405 43.5
arahy.Tifrunner.gnm1.ann1.7WMI9V Arachis hypogaea HOM05D003317 ORTHO05D003696 1.1e-73 282.3 326 46.9
arahy.Tifrunner.gnm1.ann1.C19Y0U Arachis hypogaea HOM05D003317 ORTHO05D003696 1.5e-73 282.0 328 47.0
PSO135G1032 Papaver somniferum HOM05D003317 ORTHO05D003696 2.5e-73 281.2 592 34.6
Cfa002995 Carpinus fangiana HOM05D003317 ORTHO05D003696 3.3e-73 280.8 272 51.8
GSVIVG01035471001 Vitis vinifera HOM05D003317 ORTHO05D003696 7.4e-73 279.6 325 47.1
Sabra06G0170300 Salix brachista HOM05D003317 ORTHO05D003696 2.1e-72 278.1 323 48.3
Dinv41844 Davidia involucrata HOM05D003317 ORTHO05D003696 3.6e-72 277.3 331 49.2
Cpa.g.sc126.22 Carica papaya HOM05D003317 ORTHO05D003696 8.1e-72 276.2 349 46.7
Potri.006G220600 Populus trichocarpa HOM05D003317 ORTHO05D003696 1.4e-71 275.4 325 48.3
Duzib168G1355 Durio zibethinus HOM05D003317 ORTHO05D003696 2.4e-71 274.6 345 46.7
Os08g0459100 Oryza sativa ssp. japonica HOM05D003317 ORTHO05D003696 3.1e-71 274.2 433 42.0
Ah.09g231590 Amaranthus hybridus HOM05D003317 ORTHO05D003696 4.0e-71 273.9 326 48.5
Zm00001eb177300 Zea mays HOM05D003317 ORTHO05D003696 4.0e-71 273.9 417 42.7
Glyma.13G110100 Glycine max HOM05D003317 ORTHO05D003696 5.8e-70 270.0 245 56.7
PSO210G7636 Papaver somniferum HOM05D003317 ORTHO05D003696 7.6e-70 269.6 435 40.5
AUR62028939 Chenopodium quinoa HOM05D003317 ORTHO05D003696 9.9e-70 269.2 285 49.8
Oeu018029.1 Olea europaea HOM05D003317 ORTHO05D003696 9.9e-70 269.2 328 47.3
Rhsim01G0183000 Rhododendron simsii HOM05D003317 ORTHO05D003696 3.8e-69 267.3 491 37.5
MELO3C015517.2 Cucumis melo HOM05D003317 ORTHO05D003696 4.9e-69 266.9 788 32.4
Peaxi162Scf00486g01021 Petunia axillaris HOM05D003317 ORTHO05D003696 4.9e-69 266.9 320 46.9
vmacro12621 Vaccinium macrocarpon HOM05D003317 ORTHO05D003696 4.9e-69 266.9 329 45.6
Manes.03G053200 Manihot esculenta HOM05D003317 ORTHO05D003696 2.7e-67 261.2 355 45.6
Zm00001eb040360 Zea mays HOM05D003317 ORTHO05D003696 3.5e-67 260.8 418 40.0
Nitab4.5_0000446g0150 Nicotiana tabacum HOM05D003317 ORTHO05D003696 5.1e-66 256.9 326 45.7
CSS0017754 Camellia sinensis var. sinensis HOM05D003317 ORTHO05D003696 4.3e-65 253.8 289 48.8
Gorai.001G020000 Gossypium raimondii HOM05D003317 ORTHO05D003696 8.1e-64 249.6 426 37.8
Ciclev10010155m.g Citrus clementina HOM05D003317 ORTHO05D003696 4.0e-63 247.3 404 40.1
Actinidia29348 Actinidia chinensis HOM05D003317 ORTHO05D003696 5.3e-63 246.9 427 38.6
PGSC0003DMG400018807 Solanum tuberosum HOM05D003317 ORTHO05D003696 9.0e-63 246.1 328 44.5
Sopen08g017120 Solanum pennellii HOM05D003317 ORTHO05D003696 1.5e-62 245.4 347 42.9
TWI32G0197 Tripterygium wilfordii HOM05D003317 ORTHO05D003696 2.0e-62 245.0 318 45.0
Psat4g017800 Pisum sativum HOM05D003317 ORTHO05D003696 2.6e-62 244.6 370 43.0
Solyc08g061650.4 Solanum lycopersicum HOM05D003317 ORTHO05D003696 2.6e-62 244.6 349 43.3
Gohir.A07G019500 Gossypium hirsutum HOM05D003317 ORTHO05D003696 5.8e-62 243.4 426 37.1
Lj4g0026519 Lotus japonicus HOM05D003317 ORTHO05D003696 1.0e-61 242.7 249 50.6
COL.COLO4_21141 Corchorus olitorius HOM05D003317 ORTHO05D003696 1.3e-61 242.3 278 47.5
TWI34G1197 Tripterygium wilfordii HOM05D003317 ORTHO05D003696 1.3e-61 242.3 316 44.0
Nitab4.5_0008422g0030 Nicotiana tabacum HOM05D003317 ORTHO05D003696 1.7e-61 241.9 327 44.0
Psat4g017760 Pisum sativum HOM05D003317 ORTHO05D003696 2.5e-60 238.0 279 48.0
Migut.A00075 Erythranthe guttata HOM05D003317 ORTHO05D003696 1.6e-59 235.3 396 38.1
Medtr4g125440 Medicago truncatula HOM05D003317 ORTHO05D003696 2.1e-59 235.0 335 43.0
TPR.G9461 Trifolium pratense HOM05D003317 ORTHO05D003696 2.1e-59 235.0 330 42.7
Ca_21319_v3 Cicer arietinum L. HOM05D003317 ORTHO05D003696 3.5e-59 234.2 295 46.4
MSTRG.25987 Avicennia marina HOM05D003317 ORTHO05D003696 1.1e-57 229.2 324 40.1
SalBow4G1263 Salvia bowleyana HOM05D003317 ORTHO05D003696 1.1e-55 222.6 323 41.2
SGA_v2.0_scaffold20G09159 Striga asiatica HOM05D003317 ORTHO05D003696 5.3e-55 220.3 318 42.8
Cc08_g01130 Coffea canephora HOM05D003317 ORTHO05D003696 7.2e-52 209.9 319 40.1
Lj7A221G28 Lonicera japonica HOM05D003317 ORTHO05D003696 2.3e-50 204.9 187 57.8
DCAR_001231 Daucus carota HOM05D003317 ORTHO05D003696 6.7e-50 203.4 294 39.8
HanXRQChr03g0065631 Helianthus annuus HOM05D003317 ORTHO05D003696 1.5e-49 202.2 238 45.8
CDE05G2394 Ceratophyllum demersum HOM05D001216 ORTHO05D003822 1.9e-49 201.8 416 35.6
Gohir.D07G019300 Gossypium hirsutum HOM05D003317 ORTHO05D003696 3.7e-48 197.6 426 33.6
DCAR_004378 Daucus carota HOM05D003317 ORTHO05D003696 1.1e-47 196.1 246 44.3
Psat4g030640 Pisum sativum HOM05D003317 ORTHO05D003696 2.7e-43 181.4 229 42.4
ATR0598G291 Amborella trichopoda HOM05D003317 ORTHO05D003696 3.6e-43 181.0 354 35.0
SEGI_25513 Sequoiadendron giganteum HOM05D003317 ORTHO05D003696 7.7e-38 163.3 336 33.3
Psat4g017720 Pisum sativum HOM05D003317 ORTHO05D003696 3.8e-37 161.0 233 39.5
Thhalv10015473m.g Eutrema salsugineum HOM05D003317 ORTHO05D003696 9.4e-36 156.4 224 37.1
BraA03t10357Z Brassica rapa HOM05D003317 ORTHO05D003696 7.9e-35 153.3 278 36.0
Lj1g0018915 Lotus japonicus HOM05D003317 ORTHO05D003696 2.3e-34 151.8 300 35.7
CARHR191640 Cardamine hirsuta HOM05D003317 ORTHO05D003696 3.0e-34 151.4 311 31.8
A03p10450 Brassica napus HOM05D003317 ORTHO05D003696 6.7e-34 150.2 278 35.6
AL1G20670 Arabidopsis lyrata HOM05D003317 ORTHO05D003696 1.1e-33 149.4 228 36.4
AT5G21900 Arabidopsis thaliana HOM05D003317 ORTHO05D003696 4.4e-33 147.5 272 32.4
Carub.0006s1954 Capsella rubella HOM05D003317 ORTHO05D003696 1.7e-32 145.6 213 37.1
THA.LOC104799577 Tarenaya hassleriana HOM05D003317 ORTHO05D003696 3.7e-32 144.4 320 30.6
C03p12020 Brassica napus HOM05D003317 ORTHO05D003696 8.2e-32 143.3 255 34.9
BolC3t13673H Brassica oleracea HOM05D003317 ORTHO05D003696 8.2e-32 143.3 255 34.9
AagrBONN_evm.TU.Sc2ySwM_344.4786 Anthoceros agrestis HOM05D003317 ORTHO05D003696 1.4e-31 142.5 387 29.2
AL6G32870 Arabidopsis lyrata HOM05D003317 ORTHO05D003696 1.4e-31 142.5 272 32.4
Sp6g23290 Schrenkiella parvula HOM05D003317 ORTHO05D003696 1.8e-31 142.1 291 32.0
BcaB01g04757 Brassica carinata HOM05D003317 ORTHO05D003696 2.4e-31 141.7 221 36.2
Medtr4g125410 Medicago truncatula HOM05D003317 ORTHO05D003696 2.2e-29 135.2 144 52.8
Zm00001eb042910 Zea mays HOM05D003317 ORTHO05D003696 6.5e-29 133.7 365 29.9
SEGI_37822 Sequoiadendron giganteum HOM05D003317 ORTHO05D003696 2.7e-27 128.3 138 48.6
SEGI_14499 Sequoiadendron giganteum HOM05D003317 ORTHO05D003696 1.6e-22 112.5 191 34.0
TPR.G55 Trifolium pratense HOM05D003317 ORTHO05D003696 1.6e-22 112.5 108 55.6
Medtr4g125390 Medicago truncatula HOM05D003317 ORTHO05D003696 5.5e-20 104.0 151 42.4
Zm00001eb402190 Zea mays HOM05D003317 ORTHO05D003696 9.4e-20 103.2 365 26.3
Hma1.2p1_0003F.1_g003640 Hydrangea macrophylla HOM05D003317 ORTHO05D003696 4.0e-18 97.8 87 63.2
Oeu011417.1 Olea europaea HOM05D003317 ORTHO05D003696 3.4e-17 94.7 108 44.4
Medtr4g125430 Medicago truncatula HOM05D003317 ORTHO05D003696 7.5e-17 93.6 142 38.7
Cre12.g559050 Chlamydomonas reinhardtii HOM05D003317 ORTHO05D003696 1.7e-16 92.4 332 26.8
Medtr3g435660 Medicago truncatula HOM05D003317 ORTHO05D003696 2.0e-14 85.5 159 35.8
AagrBONN_evm.TU.Sc2ySwM_228.920 Anthoceros agrestis HOM05D003317 ORTHO05D003696 2.7e-14 85.1 168 29.8
Psat4g155280 Pisum sativum HOM05D003317 ORTHO05D003696 1.3e-13 82.8 85 52.9
CBR_g28657 Chara braunii HOM05D003317 ORTHO05D003696 1.1e-12 79.7 270 25.9


User provided reference genes

Program Settings