Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.10364 Avicennia marina HOM05D004768 ORTHO05D005812 4.1e-140 501.9 359 100.0
Migut.L01777 Erythranthe guttata HOM05D004768 ORTHO05D005812 1.2e-118 430.6 358 88.8
SalBow7G2666 Salvia bowleyana HOM05D004768 ORTHO05D005812 7.0e-116 421.4 356 85.7
MSTRG.26639 Avicennia marina HOM05D004768 ORTHO05D005812 2.2e-114 416.4 346 90.2
SGA_v2.0_scaffold184G39961 Striga asiatica HOM05D004768 ORTHO05D005812 3.2e-113 412.5 354 85.3
Oeu047201.1 Olea europaea HOM05D004768 ORTHO05D005812 1.3e-109 400.6 358 80.4
CSS0047457 Camellia sinensis var. sinensis HOM05D004768 ORTHO05D005812 1.7e-109 400.2 350 86.0
Hma1.2p1_0084F.1_g043770 Hydrangea macrophylla HOM05D004768 ORTHO05D005812 1.6e-104 383.6 349 82.8
Sopen09g029240 Solanum pennellii HOM05D004768 ORTHO05D005812 8.0e-104 381.3 355 83.7
Solyc09g074400.3 Solanum lycopersicum HOM05D004768 ORTHO05D005812 4.0e-103 379.0 355 83.7
Cpa.g.sc5.22 Carica papaya HOM05D004768 ORTHO05D005812 6.3e-101 371.7 351 73.2
Ciclev10012077m.g Citrus clementina HOM05D004768 ORTHO05D005812 7.0e-100 368.2 351 72.9
Lj2A136G54 Lonicera japonica HOM05D004768 ORTHO05D005812 7.0e-100 368.2 351 81.2
CANSAT78G2462 Cannabis sativa HOM05D004768 ORTHO05D005812 9.2e-100 367.9 347 73.5
Eucgr.K02044 Eucalyptus grandis HOM05D004768 ORTHO05D005812 1.3e-98 364.0 345 82.6
Actinidia05433 Actinidia chinensis HOM05D004768 ORTHO05D005812 1.7e-98 363.6 358 79.9
Thecc.05G088700 Theobroma cacao HOM05D004768 ORTHO05D005812 2.9e-98 362.8 350 80.9
Gohir.A01G206500 Gossypium hirsutum HOM05D004768 ORTHO05D005812 1.5e-97 360.5 350 81.1
PSO384G2514 Papaver somniferum HOM05D004768 ORTHO05D005812 1.5e-97 360.5 349 81.9
Cc06_g05720 Coffea canephora HOM05D004768 ORTHO05D005812 1.9e-97 360.1 358 81.8
TWI74G0982 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 2.5e-97 359.8 345 81.7
COL.COLO4_29739 Corchorus olitorius HOM05D004768 ORTHO05D005812 4.3e-97 359.0 348 77.9
Gohir.D01G195900 Gossypium hirsutum HOM05D004768 ORTHO05D005812 4.3e-97 359.0 350 80.9
Lsat_1_v5_gn_8_77061 Lactuca sativa HOM05D004768 ORTHO05D005812 4.3e-97 359.0 345 81.4
Manes.09G055600 Manihot esculenta HOM05D004768 ORTHO05D005812 5.6e-97 358.6 348 80.5
Gorai.002G240100 Gossypium raimondii HOM05D004768 ORTHO05D005812 7.3e-97 358.2 350 80.9
PSO339G5247 Papaver somniferum HOM05D004768 ORTHO05D005812 1.2e-96 357.5 349 80.8
TWI77G0792 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 1.2e-96 357.5 345 81.7
Aqoxy2G01203 Aquilegia oxysepala HOM05D004768 ORTHO05D005812 2.8e-96 356.3 353 80.5
HanXRQChr05g0133111 Helianthus annuus HOM05D004768 ORTHO05D005812 3.6e-96 355.9 350 81.7
Sed0028141 Sechium edule HOM05D004768 ORTHO05D005812 8.0e-96 354.8 345 80.3
PGR142G0725 Punica granatum HOM05D004768 ORTHO05D005812 1.4e-95 354.0 338 76.3
Atru.chr8.1546 Acer truncatum HOM05D004768 ORTHO05D005812 3.1e-95 352.8 348 69.8
MD12G1035900 Malus domestica HOM05D004768 ORTHO05D005812 4.0e-95 352.4 342 81.6
MD14G1022600 Malus domestica HOM05D004768 ORTHO05D005812 5.2e-95 352.1 342 81.9
ClCG10G018990 Citrullus lanatus HOM05D004768 ORTHO05D005812 5.8e-94 348.6 346 81.2
Sed0006419 Sechium edule HOM05D004768 ORTHO05D005812 1.7e-93 347.1 345 78.8
Prupe.7G110600 Prunus persica HOM05D004768 ORTHO05D005812 2.9e-93 346.3 344 78.5
Glyma.03G195400 Glycine max HOM05D004768 ORTHO05D005812 3.7e-93 345.9 340 80.3
VMungo1383G3473 Vigna mungo HOM05D004768 ORTHO05D005812 4.9e-93 345.5 340 81.5
CsaV3_3G037260 Cucumis sativus L. HOM05D004768 ORTHO05D005812 6.4e-93 345.1 345 80.6
PSO229G0127 Papaver somniferum HOM05D004768 ORTHO05D005812 6.4e-93 345.1 351 70.9
Lsat_1_v5_gn_5_164801 Lactuca sativa HOM05D004768 ORTHO05D005812 1.4e-92 344.0 345 78.8
Phvul.001G190000 Phaseolus vulgaris HOM05D004768 ORTHO05D005812 1.9e-92 343.6 340 81.2
Ca_09003_v3 Cicer arietinum L. HOM05D004768 ORTHO05D005812 5.4e-92 342.0 343 79.6
Medtr7g104550 Medicago truncatula HOM05D004768 ORTHO05D005812 1.2e-91 340.9 343 79.9
Psat3g033480 Pisum sativum HOM05D004768 ORTHO05D005812 2.0e-91 340.1 343 79.6
CiPaw.09G013600 Carya illinoinensis HOM05D004768 ORTHO05D005812 1.3e-90 337.4 349 77.9
arahy.Tifrunner.gnm1.ann1.UHNL6N Arachis hypogaea HOM05D004768 ORTHO05D005812 2.3e-90 336.7 347 79.5
CiPaw.10G009400 Carya illinoinensis HOM05D004768 ORTHO05D005812 2.3e-90 336.7 349 78.5
RcHm_v2.0_Chr3g0473611 Rosa chinensis HOM05D004768 ORTHO05D005812 2.3e-90 336.7 341 78.3
Rhsim03G0075500 Rhododendron simsii HOM05D004768 ORTHO05D005812 3.0e-90 336.3 382 72.8
QL07p038809 Quercus lobata HOM05D004768 ORTHO05D005812 8.6e-90 334.7 355 77.7
QL07p039071 Quercus lobata HOM05D004768 ORTHO05D005812 8.6e-90 334.7 355 77.7
arahy.Tifrunner.gnm1.ann1.F6QZS0 Arachis hypogaea HOM05D004768 ORTHO05D005812 1.5e-89 334.0 344 79.7
HanXRQChr01g0001951 Helianthus annuus HOM05D004768 ORTHO05D005812 2.5e-89 333.2 345 75.9
Peaxi162Scf00290g00062 Petunia axillaris HOM05D004768 ORTHO05D005812 1.2e-88 330.9 353 76.5
TAR633G0463 Trochodendron aralioides HOM05D004768 ORTHO05D005812 1.6e-88 330.5 353 73.9
THA.LOC104816391 Tarenaya hassleriana HOM05D004768 ORTHO05D005812 2.1e-88 330.1 350 76.6
Lalb_Chr20g0111731 Lupinus albus HOM05D004768 ORTHO05D005812 2.8e-88 329.7 343 78.1
Potri.002G212800 Populus trichocarpa HOM05D004768 ORTHO05D005812 3.6e-88 329.3 346 77.2
Nitab4.5_0003550g0050 Nicotiana tabacum HOM05D004768 ORTHO05D005812 8.0e-88 328.2 353 65.2
FvH4_6g18650 Fragaria vesca HOM05D004768 ORTHO05D005812 1.1e-87 327.8 341 76.5
Manes.08G025000 Manihot esculenta HOM05D004768 ORTHO05D005812 3.1e-87 326.2 324 77.2
Lj1g0007409 Lotus japonicus HOM05D004768 ORTHO05D005812 5.2e-87 325.5 343 77.8
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 6.8e-87 325.1 328 79.9
ATR0776G063 Amborella trichopoda HOM05D004768 ORTHO05D005812 1.2e-86 324.3 342 76.9
Duzib128G0567 Durio zibethinus HOM05D004768 ORTHO05D005812 1.2e-86 324.3 351 69.2
Sabra16G0131600 Salix brachista HOM05D004768 ORTHO05D000138 1.5e-86 323.9 368 62.0
FAN02G2744 Fragaria x ananassa HOM05D004768 ORTHO05D005812 2.0e-86 323.6 341 76.2
Sc02g0000880 Simmondsia chinensis HOM05D004768 ORTHO05D005812 2.6e-86 323.2 351 76.9
Thhalv10002028m.g Eutrema salsugineum HOM05D004768 ORTHO05D005812 3.4e-86 322.8 352 76.1
FAN05G5395 Fragaria x ananassa HOM05D004768 ORTHO05D005812 4.4e-86 322.4 348 66.4
Sp4g05920 Schrenkiella parvula HOM05D004768 ORTHO05D005812 9.8e-86 321.2 352 75.3
FAN09G1393 Fragaria x ananassa HOM05D004768 ORTHO05D005812 2.2e-85 320.1 348 66.4
FAN05G3800 Fragaria x ananassa HOM05D004768 ORTHO05D005812 2.9e-85 319.7 348 66.1
MELO3C009471.2 Cucumis melo HOM05D004768 ORTHO05D005812 3.7e-85 319.3 345 69.3
AUR62017616 Chenopodium quinoa HOM05D004768 ORTHO05D005812 1.9e-84 317.0 350 76.9
Aa31sc210G50 Aethionema arabicum HOM05D004768 ORTHO05D005812 2.4e-84 316.6 357 65.0
Potri.001G221000 Populus trichocarpa HOM05D004768 ORTHO05D005812 4.1e-84 315.8 349 69.6
AL4G18210 Arabidopsis lyrata HOM05D004768 ORTHO05D005812 7.0e-84 315.1 352 75.0
HPP92_013808 Vanilla planifolia HOM05D004768 ORTHO05D005812 2.7e-83 313.2 351 67.2
AT2G26060 Arabidopsis thaliana HOM05D004768 ORTHO05D005812 6.0e-83 312.0 352 74.7
BcaB08g35238 Brassica carinata HOM05D004768 ORTHO05D005812 6.0e-83 312.0 346 75.7
Carub.0004s0588 Capsella rubella HOM05D004768 ORTHO05D005812 6.0e-83 312.0 350 74.6
EL10Ac4g08441 Beta vulgaris HOM05D004768 ORTHO05D005812 7.8e-83 311.6 349 76.2
CDE02G3328 Ceratophyllum demersum HOM05D004768 ORTHO05D005812 1.0e-82 311.2 354 46.9
TPR.G19532 Trifolium pratense HOM05D004768 ORTHO05D005812 1.0e-82 311.2 345 68.4
SEGI_40271 Sequoiadendron giganteum HOM05D004768 ORTHO05D005812 3.0e-82 309.7 352 65.6
CDE08G0455 Ceratophyllum demersum HOM05D004768 ORTHO05D005812 1.1e-79 301.2 342 52.0
unitig_746.g26778 Utricularia gibba HOM05D004768 ORTHO05D005812 1.4e-79 300.8 354 74.6
Carub.0007s0749 Capsella rubella HOM05D004768 ORTHO05D005812 2.3e-79 300.1 345 70.1
FAN14G4330 Fragaria x ananassa HOM05D004768 ORTHO05D005812 2.3e-79 300.1 348 64.4
GSVIVG01033839001 Vitis vinifera HOM05D004768 ORTHO05D005812 2.4e-76 290.0 348 72.4
AL7G18690 Arabidopsis lyrata HOM05D004768 ORTHO05D005812 3.9e-74 282.7 351 69.5
Dinv31684 Davidia involucrata HOM05D004768 ORTHO05D005812 1.1e-73 281.2 276 81.9
vmacro07406 Vaccinium macrocarpon HOM05D004768 ORTHO05D005812 1.1e-73 281.2 483 56.3
Dinv21211 Davidia involucrata HOM05D004768 ORTHO05D005812 5.6e-73 278.9 276 86.2
PGSC0003DMG400016841 Solanum tuberosum HOM05D004768 ORTHO05D005812 2.2e-69 266.9 276 85.9
Nitab4.5_0001107g0160 Nicotiana tabacum HOM05D004768 ORTHO05D005812 2.9e-69 266.5 355 65.4
A08p05150 Brassica napus HOM05D004768 ORTHO05D005812 3.2e-68 263.1 345 62.9
Haze_19607 Corylus avellana HOM05D004768 ORTHO05D005812 6.0e-67 258.8 350 70.6
Aa31LG5G9700 Aethionema arabicum HOM05D004768 ORTHO05D005812 5.6e-65 252.3 318 73.0
Os07g0252000 Oryza sativa ssp. japonica HOM05D004768 ORTHO05D005812 9.6e-65 251.5 339 61.1
EL10Ac4g08444 Beta vulgaris HOM05D004768 ORTHO05D005812 2.6e-62 243.4 285 46.3
Oeu056927.1 Olea europaea HOM05D004768 ORTHO05D005812 4.4e-62 242.7 255 87.5
AagrBONN_evm.TU.Sc2ySwM_344.1733 Anthoceros agrestis HOM05D004768 ORTHO05D005812 7.6e-62 241.9 342 58.8
Sabra16G0123600 Salix brachista HOM05D000102 ORTHO05D005812 1.4e-60 237.7 381 52.0
BcaC07g40836 Brassica carinata HOM05D004768 ORTHO05D005812 2.4e-60 236.9 352 67.0
C08p38320 Brassica napus HOM05D004768 ORTHO05D005812 4.2e-60 236.1 354 56.8
A09p55390 Brassica napus HOM05D004768 ORTHO05D005812 9.3e-60 235.0 354 56.5
BraA09t40941Z Brassica rapa HOM05D004768 ORTHO05D005812 9.3e-60 235.0 354 56.5
DCAR_020747 Daucus carota HOM05D004768 ORTHO05D005812 1.6e-59 234.2 346 52.6
BolC8t51408H Brassica oleracea HOM05D004768 ORTHO05D005812 2.1e-59 233.8 354 56.5
Pp3c21_14500 Physcomitrium patens HOM05D004768 ORTHO05D005812 3.0e-58 229.9 349 65.9
BolC8t47355H Brassica oleracea HOM05D004768 ORTHO05D005812 1.9e-57 227.3 360 39.7
CARHR241000 Cardamine hirsuta HOM05D004768 ORTHO05D005812 9.6e-49 198.4 281 57.7
Sopen09g004150 Solanum pennellii HOM05D004768 ORTHO05D005812 9.6e-49 198.4 360 48.3
SMO239G0020 Selaginella moellendorffii HOM05D004768 ORTHO05D005812 4.0e-47 193.0 363 50.4
TWI53G2067 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 1.3e-45 188.0 114 76.3
DCAR_009163 Daucus carota HOM05D004768 ORTHO05D005812 8.4e-45 185.3 116 70.7
Solyc09g009410.3 Solanum lycopersicum HOM05D004768 ORTHO05D005812 1.9e-44 184.1 360 47.5
Hund03983 Selenicereus undatus HOM05D004768 ORTHO05D005812 7.9e-43 178.7 115 74.8
Mapoly0001s0287 Marchantia polymorpha HOM05D004768 ORTHO05D005812 6.7e-42 175.6 348 52.6
Ah.01g002000 Amaranthus hybridus HOM05D000289 ORTHO05D000208 2.1e-40 170.6 295 69.5
DCAR_009162 Daucus carota HOM05D004768 ORTHO05D005812 2.1e-40 170.6 105 74.3
TAR636G3610 Trochodendron aralioides HOM05D004768 ORTHO05D005812 2.8e-40 170.2 107 75.7
AT4G32990 Arabidopsis thaliana HOM05D004768 ORTHO05D005812 8.2e-40 168.7 308 54.9
BraA08t32532Z Brassica rapa HOM05D004768 ORTHO05D005812 3.2e-36 156.8 110 66.4
Aqoxy3G02763 Aquilegia oxysepala HOM05D004768 ORTHO05D005812 2.1e-35 154.1 106 74.5
C08p05390 Brassica napus HOM05D004768 ORTHO05D005812 1.0e-34 151.8 351 37.0
Zm00001eb304430 Zea mays HOM05D004768 ORTHO05D005812 9.0e-31 138.7 105 59.0
Potri.001G221150 Populus trichocarpa HOM05D004768 ORTHO05D005812 2.0e-30 137.5 70 85.7
CARHR262780 Cardamine hirsuta HOM05D004768 ORTHO05D005812 1.9e-28 131.0 89 69.7
Cre08.g374400 Chlamydomonas reinhardtii HOM05D004768 ORTHO05D005812 1.8e-23 114.4 470 35.1
BcaC07g37166 Brassica carinata HOM05D004768 ORTHO05D005812 5.3e-23 112.8 269 69.1
SalBow1G7826 Salvia bowleyana HOM05D004768 ORTHO05D005812 1.4e-18 98.2 344 29.4
AagrBONN_evm.TU.Sc2ySwM_344.3396 Anthoceros agrestis HOM05D004768 ORTHO05D005812 8.8e-18 95.5 158 38.6
CARHR114770 Cardamine hirsuta HOM05D004768 ORTHO05D005812 8.8e-18 95.5 75 62.7
DCAR_020750 Daucus carota HOM05D004768 ORTHO05D005812 1.1e-17 95.1 99 45.5
SalBow3G0715 Salvia bowleyana HOM05D004768 ORTHO05D005812 9.7e-17 92.0 107 52.3
SHI23990 Sapria himalayana HOM05D000002 ORTHO05D000001 4.8e-16 89.7 87 54.0
Oeu009219.1 Olea europaea HOM05D004768 ORTHO05D005812 1.5e-14 84.7 178 55.1
Nn2g14155 Nelumbo nucifera HOM05D004768 ORTHO05D005812 2.6e-14 84.0 45 84.4
SalBow1G3573 Salvia bowleyana HOM05D004768 ORTHO05D005812 5.9e-14 82.8 77 55.8
Aa31LG7G14190 Aethionema arabicum HOM05D004768 ORTHO05D005812 1.7e-13 81.3 99 49.5
BcaC01g04899 Brassica carinata HOM05D004768 ORTHO05D005812 7.2e-12 75.9 52 71.2
CBR_g39931 Chara braunii HOM05D000019 ORTHO05D000002 7.2e-12 75.9 116 37.9
MCO12G400 Micromonas commoda HOM05D004768 ORTHO05D005812 4.7e-11 73.2 335 43.0
BolC3t15591H Brassica oleracea HOM05D000416 ORTHO05D000322 6.1e-11 72.8 47 76.6
Glyma.19G194908 Glycine max HOM05D004768 ORTHO05D005812 6.1e-11 72.8 35 91.4
Potri.014G136700 Populus trichocarpa HOM05D004768 ORTHO05D005812 2.3e-10 70.9 44 75.0
PGSC0003DMG400001452 Solanum tuberosum HOM05D005508 ORTHO05D006882 8.2e-08 62.4 96 34.4
PGSC0003DMG400001639 Solanum tuberosum HOM05D005508 ORTHO05D006882 5.3e-07 59.7 96 34.4
Solyc12g088620.2 Solanum lycopersicum HOM05D002634 ORTHO05D003100 1.6e-06 58.2 114 35.1
Ciclev10025285m.g Citrus clementina HOM05D002634 ORTHO05D003100 2.0e-06 57.8 120 37.5
MD02G1179800 Malus domestica HOM05D002634 ORTHO05D003100 2.0e-06 57.8 110 36.4
Sc02g0007620 Simmondsia chinensis HOM05D002634 ORTHO05D003100 2.0e-06 57.8 101 38.6
Solyc01g111030.2 Solanum lycopersicum HOM05D005508 ORTHO05D006882 2.0e-06 57.8 96 33.3
Solyc12g088630.2 Solanum lycopersicum HOM05D002634 ORTHO05D003100 2.0e-06 57.8 116 34.5
Cfa026486 Carpinus fangiana HOM05D002410 ORTHO05D002805 2.6e-06 57.4 109 33.0
Peaxi162Scf00160g00029 Petunia axillaris HOM05D002634 ORTHO05D003100 2.6e-06 57.4 113 37.2
Sopen01g053090 Solanum pennellii HOM05D005508 ORTHO05D006882 2.6e-06 57.4 96 33.3
Sopen02g033500 Solanum pennellii HOM05D005508 ORTHO05D006882 2.6e-06 57.4 96 32.3
Atru.chr3.237 Acer truncatum HOM05D002634 ORTHO05D003100 3.5e-06 57.0 97 38.1
MD15G1290400 Malus domestica HOM05D002634 ORTHO05D003100 3.5e-06 57.0 110 36.4
Solyc02g088780.4 Solanum lycopersicum HOM05D005508 ORTHO05D006882 3.5e-06 57.0 94 31.9
Sopen12g030520 Solanum pennellii HOM05D002634 ORTHO05D003100 3.5e-06 57.0 113 35.4
Dinv39256 Davidia involucrata HOM05D002634 ORTHO05D003100 4.5e-06 56.6 110 40.0
Oeu011602.1 Olea europaea HOM05D002634 ORTHO05D003100 4.5e-06 56.6 101 37.6
RcHm_v2.0_Chr6g0308951 Rosa chinensis HOM05D002634 ORTHO05D003100 4.5e-06 56.6 110 35.5
Sopen12g030530 Solanum pennellii HOM05D002634 ORTHO05D003100 4.5e-06 56.6 116 33.6
SGA_v2.0_scaffold214G42258 Striga asiatica HOM05D002634 ORTHO05D003100 5.9e-06 56.2 115 35.7
Migut.C00519 Erythranthe guttata HOM05D002634 ORTHO05D003100 7.7e-06 55.8 108 38.9
Nitab4.5_0000569g0150 Nicotiana tabacum HOM05D002634 ORTHO05D003100 7.7e-06 55.8 110 36.4
Peaxi162Scf00166g00526 Petunia axillaris HOM05D005508 ORTHO05D006882 7.7e-06 55.8 96 32.3
Solyc12g088540.3 Solanum lycopersicum HOM05D002634 ORTHO05D003100 7.7e-06 55.8 115 33.0
PGSC0003DMG400038331 Solanum tuberosum HOM05D002634 ORTHO05D003100 7.7e-06 55.8 110 35.5


User provided reference genes

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