Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 0.0e+00 1793.9 948 100.0
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 0.0e+00 1332.0 959 73.3
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 0.0e+00 1235.7 1029 67.0
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 0.0e+00 1122.1 876 64.5
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 0.0e+00 1120.9 879 66.1
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 0.0e+00 1119.8 882 63.9
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 0.0e+00 1118.6 913 65.8
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 0.0e+00 1115.9 968 62.0
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 0.0e+00 1114.0 882 63.8
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 0.0e+00 1109.4 874 63.5
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 8.7e-307 1057.0 921 59.2
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 1.2e-303 1046.6 877 60.4
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 2.1e-297 1025.8 877 59.2
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 9.0e-296 1020.4 896 60.5
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 3.0e-291 1005.4 763 65.5
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 8.1e-289 997.3 875 59.0
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 4.0e-288 995.0 878 58.4
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 1.3e-286 989.9 839 61.7
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 2.2e-286 989.2 879 58.7
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 4.9e-286 988.0 879 58.5
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 5.5e-285 984.6 882 58.8
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 1.5e-282 976.5 873 58.6
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 3.3e-282 975.3 939 60.1
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 3.7e-281 971.8 870 58.6
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 1.2e-279 966.8 879 56.9
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 4.2e-277 958.4 873 56.7
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 3.0e-275 952.2 874 57.0
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 4.3e-274 948.3 887 55.8
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 7.4e-274 947.6 884 56.3
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 1.3e-273 946.8 876 56.3
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 8.2e-273 944.1 894 55.7
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 3.1e-272 942.2 880 56.6
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 3.4e-271 938.7 907 54.9
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 7.7e-271 937.6 910 55.7
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 7.7e-271 937.6 862 57.3
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 1.4e-269 933.3 876 56.5
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 1.8e-267 926.4 880 55.3
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 2.3e-267 926.0 876 55.8
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 3.0e-267 925.6 873 54.9
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 1.5e-266 923.3 878 54.6
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 1.5e-266 923.3 876 55.9
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 4.5e-263 911.8 879 53.8
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 1.1e-261 907.1 878 54.6
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 1.1e-261 907.1 875 54.5
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 5.5e-261 904.8 883 54.5
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 1.1e-258 897.1 878 54.8
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.4e-256 890.2 875 52.8
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 1.4e-256 890.2 867 53.4
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 1.8e-256 889.8 875 52.7
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 5.5e-253 878.2 846 54.8
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 7.2e-253 877.9 873 52.5
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 1.2e-252 877.1 880 52.7
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 8.0e-252 874.4 879 52.7
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.4e-251 873.6 894 54.7
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.0e-251 872.5 873 51.9
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 2.6e-250 869.4 879 52.2
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 1.8e-248 863.2 846 54.1
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 5.3e-248 861.7 845 54.2
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 1.0e-246 857.4 878 52.8
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 3.0e-243 845.9 873 51.4
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 4.4e-242 842.0 882 51.7
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 9.8e-242 840.9 844 53.8
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 3.7e-241 839.0 897 51.2
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 1.1e-240 837.4 872 50.3
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 3.5e-239 832.4 1337 39.6
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 4.5e-239 832.0 876 50.6
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 2.9e-238 829.3 864 50.6
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 5.0e-230 802.0 869 49.4
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 1.6e-228 797.0 825 50.9
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 1.2e-226 790.8 773 53.8
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 3.4e-226 789.3 876 48.1
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 4.4e-226 788.9 867 48.3
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 7.5e-226 788.1 872 50.1
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 1.7e-225 786.9 884 47.9
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 2.0e-218 763.5 856 49.1
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 2.5e-213 746.5 853 46.7
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 1.2e-210 737.6 850 47.3
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 1.5e-210 737.3 847 48.8
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 5.4e-208 728.8 861 48.0
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 5.6e-205 718.8 755 52.8
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.1e-204 716.8 857 47.5
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 4.7e-204 715.7 857 47.3
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 7.6e-202 708.4 827 45.1
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 1.2e-194 684.5 850 45.4
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.5e-194 684.1 851 45.8
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 6.4e-193 678.7 1379 34.2
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 8.4e-193 678.3 893 43.3
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 1.1e-192 677.9 884 43.4
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 1.4e-192 677.6 866 44.6
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 1.4e-192 677.6 866 44.6
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 2.7e-191 673.3 874 44.7
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 1.0e-190 671.4 866 44.3
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 1.3e-190 671.0 866 44.2
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 2.3e-190 670.2 673 53.2
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 3.0e-190 669.8 866 44.2
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 4.4e-186 656.0 853 43.0
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 1.1e-184 651.4 861 42.3
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 1.6e-183 647.5 843 43.5
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 1.6e-183 647.5 848 42.9
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 2.7e-183 646.7 862 42.7
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 4.6e-183 646.0 853 42.3
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 7.9e-183 645.2 856 44.2
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 1.9e-181 640.6 848 42.9
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 3.6e-180 636.3 889 42.1
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 1.5e-178 630.9 858 44.1
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 1.1e-171 608.2 850 41.5
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 1.4e-171 607.8 887 39.8
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 2.6e-170 603.6 709 45.8
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 2.4e-163 580.5 871 41.0
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 3.8e-161 573.2 850 41.4
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 2.5e-160 570.5 520 56.7
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 8.7e-158 562.0 464 61.4
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 2.5e-152 543.9 409 66.5
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 4.5e-146 523.1 578 51.4
TAR633G1719 Trochodendron aralioides HOM05D003469 ORTHO05D004084 8.5e-137 492.3 418 57.2
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 3.6e-127 460.3 647 42.7
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 2.1e-119 434.5 321 67.9
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 7.5e-117 426.0 332 64.5
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 5.0e-113 413.3 363 60.3
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 1.7e-105 388.3 785 33.1
FvH4_6g38030 Fragaria vesca HOM05D003469 ORTHO05D004084 3.9e-105 387.1 384 50.5
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 2.5e-104 384.4 1089 27.9
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 7.5e-101 372.9 309 60.8
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 2.2e-100 371.3 428 48.6
MD17G1141000 Malus domestica HOM05D003469 ORTHO05D004084 4.6e-98 363.6 408 45.6
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 7.8e-98 362.8 807 32.1
Cpa.g.sc21.245 Carica papaya HOM05D003469 ORTHO05D004084 1.1e-96 359.0 361 51.2
AUR62000094 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.8e-94 351.7 467 42.4
COL.COLO4_25121 Corchorus olitorius HOM05D003469 ORTHO05D004084 1.2e-93 349.0 393 48.3
CDE05G3544 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 5.8e-93 346.7 381 50.4
vmacro23125 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 4.6e-90 337.0 425 44.5
Oeu035042.1 Olea europaea HOM05D003469 ORTHO05D004084 2.8e-87 327.8 278 62.2
Potri.013G129500 Populus trichocarpa HOM05D003469 ORTHO05D000003 2.3e-86 324.7 387 45.5
CARHR018280 Cardamine hirsuta HOM05D003469 ORTHO05D004084 1.7e-84 318.5 482 38.6
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 2.9e-84 317.8 625 34.1
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 3.9e-81 307.4 267 59.6
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 4.0e-70 270.8 192 65.6
SHI03015 Sapria himalayana HOM05D003469 ORTHO05D004084 7.1e-67 260.0 251 50.2
Medtr4g074690 Medicago truncatula HOM05D003469 ORTHO05D004084 6.9e-62 243.4 284 46.5
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.9e-59 235.3 350 40.3
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.7e-58 231.5 168 65.5
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 4.6e-58 230.7 177 63.3
C04p00500 Brassica napus HOM05D003469 ORTHO05D004084 1.0e-52 213.0 351 35.6
Ciclev10020572m.g Citrus clementina HOM05D003469 ORTHO05D004084 1.3e-52 212.6 334 38.0
QL09p054785 Quercus lobata HOM05D003469 ORTHO05D004084 2.9e-52 211.5 180 57.2
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 1.3e-47 196.1 331 40.2
Cre10.g464950 Chlamydomonas reinhardtii HOM05D003469 ORTHO05D004084 8.2e-47 193.4 327 34.9
Thhalv10002713m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 1.0e-41 176.4 135 62.2
Ca_16140_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.6e-39 169.1 162 51.2
SEGI_05114 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 2.4e-38 165.2 148 57.4
BcaC02g12573 Brassica carinata HOM05D003469 ORTHO05D004084 1.2e-37 162.9 240 37.1
Haze_14034 Corylus avellana HOM05D003469 ORTHO05D004084 1.6e-34 152.5 132 55.3
Actinidia02459 Actinidia chinensis HOM05D003469 ORTHO05D004084 3.0e-33 148.3 120 59.2
Sabra13G0107500 Salix brachista HOM05D000001 ORTHO05D000003 8.8e-33 146.7 163 50.3
SEGI_26656 Sequoiadendron giganteum HOM05D003469 ORTHO05D000001 1.1e-32 146.4 164 47.0
Psat0s3379g0080 Pisum sativum HOM05D003469 ORTHO05D004084 2.0e-32 145.6 202 42.1
BcaC02g12574 Brassica carinata HOM05D003469 ORTHO05D004084 4.4e-32 144.4 101 65.3
ECA232G2749 Erigeron canadensis HOM05D001807 ORTHO05D002044 1.7e-31 142.5 86 72.1
Ca_16137_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 2.4e-30 138.7 180 45.6
Glyma.07G124800 Glycine max HOM05D003469 ORTHO05D004084 3.1e-30 138.3 152 50.0
Cpa.g.sc21.244 Carica papaya HOM05D003469 ORTHO05D004084 1.3e-28 132.9 85 71.8
Haze_14035 Corylus avellana HOM05D003469 ORTHO05D004084 2.9e-28 131.7 202 38.6
Rhsim02G0229800 Rhododendron simsii HOM05D000151 ORTHO05D000074 8.5e-28 130.2 80 75.0
ATR0002G001 Amborella trichopoda HOM05D003469 ORTHO05D004084 4.2e-27 127.9 84 67.9
Oeu026515.1 Olea europaea HOM05D003469 ORTHO05D004084 1.2e-26 126.3 88 67.0
Lsat_1_v5_gn_0_35341 Lactuca sativa HOM05D003469 ORTHO05D004084 2.3e-25 122.1 132 47.0
Aa31LG2G17580 Aethionema arabicum HOM05D003469 ORTHO05D004084 4.4e-24 117.9 81 66.7
Cpa.g.sc21.247 Carica papaya HOM05D003469 ORTHO05D004084 1.7e-23 115.9 130 50.8
FAN20G1461 Fragaria x ananassa HOM05D003469 ORTHO05D004084 5.0e-20 104.4 168 38.7
Psat0s3379g0040 Pisum sativum HOM05D003469 ORTHO05D004084 7.2e-19 100.5 121 43.8
SEGI_39938 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 1.5e-16 92.8 103 48.5
PRCOL_00004204 Prasinoderma coloniale HOM05D003469 ORTHO05D004084 4.4e-16 91.3 945 21.1
AagrBONN_evm.TU.Sc2ySwM_362.2853 Anthoceros agrestis HOM05D003469 ORTHO05D004084 6.3e-15 87.4 96 43.8
Ca_19033_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.0e-12 80.1 56 62.5
Lsat_1_v5_gn_6_14080 Lactuca sativa HOM05D002718 ORTHO05D004084 8.5e-12 77.0 71 53.5
SHI03013 Sapria himalayana HOM05D003469 ORTHO05D004084 1.1e-11 76.6 92 43.5
QL01p054481 Quercus lobata HOM05D003469 ORTHO05D004084 1.2e-10 73.2 61 55.7
Lj9A422T78 Lonicera japonica HOM05D003469 ORTHO05D029064 1.6e-10 72.8 84 48.8
MCO03G148 Micromonas commoda HOM05D003469 ORTHO05D004084 5.2e-09 67.8 81 43.2
Sp4g05220 Schrenkiella parvula HOM05D003469 ORTHO05D004084 1.2e-08 66.6 47 61.7
Medtr4g074700 Medicago truncatula HOM05D003469 ORTHO05D004084 2.6e-08 65.5 95 37.9
Lj9A422T77 Lonicera japonica HOM05D003469 ORTHO05D004084 8.3e-07 60.5 36 69.4
Cc00_g33310 Coffea canephora HOM05D003469 ORTHO05D029064 1.8e-06 59.3 43 62.8


User provided reference genes

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