Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C034926.2 Cucumis melo HOM05D002267 ORTHO05D001928 6.9e-66 253.8 128 100.0
MELO3C024825.2 Cucumis melo HOM05D002267 ORTHO05D001928 2.6e-12 75.9 77 59.7
CsaV3_5G013310 Cucumis sativus L. HOM05D000992 ORTHO05D001928 9.1e-10 67.4 81 51.9
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 1.9e-07 59.7 38 78.9
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 1.9e-07 59.7 38 78.9
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 1.9e-07 59.7 38 78.9
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 1.9e-07 59.7 38 78.9
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 1.9e-07 59.7 38 78.9
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 1.9e-07 59.7 38 78.9
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 1.9e-07 59.7 38 78.9
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 1.9e-07 59.7 38 78.9
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.9e-07 59.7 38 78.9
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 1.9e-07 59.7 38 78.9
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 1.9e-07 59.7 38 78.9
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 1.9e-07 59.7 38 78.9
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 1.9e-07 59.7 38 78.9
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 1.9e-07 59.7 38 78.9
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 1.9e-07 59.7 38 78.9
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 1.9e-07 59.7 38 78.9
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 1.9e-07 59.7 38 78.9
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 1.9e-07 59.7 38 78.9
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 1.9e-07 59.7 38 78.9
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 2.5e-07 59.3 38 76.3
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 2.5e-07 59.3 38 76.3
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 2.5e-07 59.3 38 76.3
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 2.5e-07 59.3 38 76.3
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 2.5e-07 59.3 38 76.3
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 2.5e-07 59.3 38 76.3
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 2.5e-07 59.3 38 76.3
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 2.5e-07 59.3 38 78.9
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 2.5e-07 59.3 38 76.3
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 3.2e-07 58.9 38 73.7
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 3.2e-07 58.9 38 76.3
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 3.2e-07 58.9 38 76.3
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 3.2e-07 58.9 38 73.7
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 4.2e-07 58.5 38 76.3
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 4.2e-07 58.5 38 76.3
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 4.2e-07 58.5 38 76.3
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 4.2e-07 58.5 38 76.3
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 4.2e-07 58.5 40 75.0
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 4.2e-07 58.5 38 76.3
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 5.5e-07 58.2 38 73.7
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 5.5e-07 58.2 38 76.3
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 5.5e-07 58.2 38 76.3
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 5.5e-07 58.2 38 78.9
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 5.5e-07 58.2 38 76.3
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 5.5e-07 58.2 38 76.3
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 5.5e-07 58.2 38 76.3
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 5.5e-07 58.2 38 76.3
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 7.2e-07 57.8 38 73.7
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 7.2e-07 57.8 38 73.7
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 7.2e-07 57.8 38 73.7
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 7.2e-07 57.8 38 73.7
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 7.2e-07 57.8 38 76.3
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 7.2e-07 57.8 38 76.3
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 7.2e-07 57.8 38 73.7
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 9.4e-07 57.4 38 76.3
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 9.4e-07 57.4 38 76.3
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 9.4e-07 57.4 38 76.3
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 9.4e-07 57.4 38 76.3
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 9.4e-07 57.4 38 76.3
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 9.4e-07 57.4 38 76.3
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 9.4e-07 57.4 38 76.3
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 9.4e-07 57.4 38 76.3
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 9.4e-07 57.4 38 76.3
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 9.4e-07 57.4 38 76.3
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 9.4e-07 57.4 38 76.3
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 9.4e-07 57.4 38 76.3
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 9.4e-07 57.4 38 71.1
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 9.4e-07 57.4 38 73.7
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 9.4e-07 57.4 38 76.3
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 1.2e-06 57.0 38 73.7
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 1.2e-06 57.0 38 73.7
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 1.2e-06 57.0 38 76.3
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.2e-06 57.0 38 73.7
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 1.2e-06 57.0 38 73.7
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 1.2e-06 57.0 38 73.7
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 1.2e-06 57.0 38 71.1
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 1.2e-06 57.0 38 76.3
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 1.6e-06 56.6 38 73.7
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 1.6e-06 56.6 38 73.7
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 1.6e-06 56.6 38 71.1
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 2.1e-06 56.2 38 73.7
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 2.1e-06 56.2 38 73.7
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 2.1e-06 56.2 38 73.7
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.1e-06 56.2 38 73.7
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 2.1e-06 56.2 38 73.7
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 2.1e-06 56.2 38 73.7
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 2.1e-06 56.2 38 73.7
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 2.7e-06 55.8 38 71.1
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 2.7e-06 55.8 38 71.1
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 2.7e-06 55.8 38 71.1
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 2.7e-06 55.8 38 73.7
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.7e-06 55.8 38 71.1
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 2.7e-06 55.8 38 73.7
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 3.6e-06 55.5 38 68.4
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 3.6e-06 55.5 38 73.7
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 3.6e-06 55.5 38 71.1
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 3.6e-06 55.5 38 73.7
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 3.6e-06 55.5 38 71.1
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 3.6e-06 55.5 38 71.1
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 3.6e-06 55.5 38 73.7
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 3.6e-06 55.5 38 73.7
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 4.7e-06 55.1 38 68.4
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 4.7e-06 55.1 38 71.1
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 4.7e-06 55.1 38 71.1
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 4.7e-06 55.1 38 71.1
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 4.7e-06 55.1 38 71.1
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 4.7e-06 55.1 38 73.7
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 4.7e-06 55.1 37 75.7
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 4.7e-06 55.1 38 71.1
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 6.1e-06 54.7 38 71.1
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 6.1e-06 54.7 38 71.1
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 6.1e-06 54.7 40 67.5
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 6.1e-06 54.7 38 68.4
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 6.1e-06 54.7 38 68.4
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 8.0e-06 54.3 38 71.1


User provided reference genes

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