Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C034840.2 Cucumis melo HOM05D002168 ORTHO05D166283 1.2e-92 343.2 171 100.0
ClCG10G015830 Citrullus lanatus HOM05D002168 ORTHO05D002277 3.7e-14 82.4 71 63.4
MELO3C009794.2 Cucumis melo HOM05D002168 ORTHO05D002277 3.7e-14 82.4 71 63.4
CsaV3_3G040620 Cucumis sativus L. HOM05D002168 ORTHO05D002277 3.7e-14 82.4 71 63.4
Sed0008218 Sechium edule HOM05D002168 ORTHO05D002277 8.2e-14 81.3 71 62.0
FvH4_1g28580 Fragaria vesca HOM05D002168 ORTHO05D002277 7.6e-12 74.7 71 57.7
FAN19G2763 Fragaria x ananassa HOM05D002168 ORTHO05D002277 7.6e-12 74.7 71 57.7
FAN26G0197 Fragaria x ananassa HOM05D002168 ORTHO05D002277 7.6e-12 74.7 71 57.7
Prupe.7G014600 Prunus persica HOM05D002168 ORTHO05D002277 7.6e-12 74.7 71 57.7
RcHm_v2.0_Chr3g0496111 Rosa chinensis HOM05D002168 ORTHO05D002277 7.6e-12 74.7 71 57.7
FAN28G1730 Fragaria x ananassa HOM05D002168 ORTHO05D002277 1.7e-11 73.6 71 56.3
arahy.Tifrunner.gnm1.ann1.B3FMDE Arachis hypogaea HOM05D002168 ORTHO05D002277 2.2e-11 73.2 71 57.7
arahy.Tifrunner.gnm1.ann1.V0KP8I Arachis hypogaea HOM05D002168 ORTHO05D002277 2.2e-11 73.2 71 57.7
Ca_08312_v3 Cicer arietinum L. HOM05D002168 ORTHO05D002277 2.2e-11 73.2 71 57.7
Phvul.001G105633 Phaseolus vulgaris HOM05D002168 ORTHO05D002277 2.2e-11 73.2 71 57.7
Psat0s2078g0040 Pisum sativum HOM05D002168 ORTHO05D002277 2.2e-11 73.2 71 57.7
VMungo1383G0989 Vigna mungo HOM05D002168 ORTHO05D002277 2.2e-11 73.2 71 57.7
CAN.G9.1 Capsicum annuum HOM05D002168 ORTHO05D002277 2.9e-11 72.8 71 54.9
Cfa017714 Carpinus fangiana HOM05D002168 ORTHO05D002277 2.9e-11 72.8 71 56.3
AUR62018085 Chenopodium quinoa HOM05D002168 ORTHO05D002277 2.9e-11 72.8 71 56.3
AUR62032008 Chenopodium quinoa HOM05D002168 ORTHO05D002277 2.9e-11 72.8 71 56.3
Haze_20409 Corylus avellana HOM05D002168 ORTHO05D002277 2.9e-11 72.8 71 56.3
Peaxi162Scf01421g00012 Petunia axillaris HOM05D002168 ORTHO05D002277 2.9e-11 72.8 71 54.9
QL07p017571 Quercus lobata HOM05D002168 ORTHO05D002277 2.9e-11 72.8 71 56.3
Sopen08g019820 Solanum pennellii HOM05D002168 ORTHO05D002277 2.9e-11 72.8 71 54.9
PGSC0003DMG401007628 Solanum tuberosum HOM05D002168 ORTHO05D002277 2.9e-11 72.8 71 54.9
Atru.chr2.1516 Acer truncatum HOM05D002168 ORTHO05D002277 3.8e-11 72.4 71 56.3
Cpa.g.sc1931.1 Carica papaya HOM05D002168 ORTHO05D002277 3.8e-11 72.4 71 57.7
Lalb_Chr14g0364831 Lupinus albus HOM05D002168 ORTHO05D002277 3.8e-11 72.4 71 56.3
Sabra19G0050400 Salix brachista HOM05D002168 ORTHO05D002277 3.8e-11 72.4 71 56.3
Actinidia03921 Actinidia chinensis HOM05D002168 ORTHO05D002277 5.0e-11 72.0 71 54.9
Aqoxy1G00512 Aquilegia oxysepala HOM05D002168 ORTHO05D002277 5.0e-11 72.0 71 54.9
Ciclev10019242m.g Citrus clementina HOM05D002168 ORTHO05D002277 5.0e-11 72.0 71 56.3
Dinv25043 Davidia involucrata HOM05D002168 ORTHO05D002277 6.5e-11 71.6 71 54.9
Manes.08G153100 Manihot esculenta HOM05D002168 ORTHO05D002277 6.5e-11 71.6 71 54.9
Potri.019G040100 Populus trichocarpa HOM05D002168 ORTHO05D002277 6.5e-11 71.6 71 54.9
TAR633G2049 Trochodendron aralioides HOM05D002168 ORTHO05D002277 6.5e-11 71.6 71 53.5
COL.COLO4_28638 Corchorus olitorius HOM05D002168 ORTHO05D002277 8.4e-11 71.2 71 54.9
Dinv13788 Davidia involucrata HOM05D002168 ORTHO05D002277 8.4e-11 71.2 71 54.9
Glyma.16G036100 Glycine max HOM05D002168 ORTHO05D002277 8.4e-11 71.2 71 56.3
Gohir.A11G229100 Gossypium hirsutum HOM05D002168 ORTHO05D002277 8.4e-11 71.2 71 54.9
Gohir.D11G241200 Gossypium hirsutum HOM05D002168 ORTHO05D002277 8.4e-11 71.2 71 54.9
Gorai.007G255300 Gossypium raimondii HOM05D002168 ORTHO05D002277 8.4e-11 71.2 71 54.9
Potri.013G065700 Populus trichocarpa HOM05D002168 ORTHO05D002277 8.4e-11 71.2 71 53.5
Ah.04g153620 Amaranthus hybridus HOM05D002168 ORTHO05D002277 1.1e-10 70.9 71 54.9
CiPaw.09G166700 Carya illinoinensis HOM05D002168 ORTHO05D002277 1.1e-10 70.9 71 54.9
MBI11_g10545_MAGBIO Magnolia biondii HOM05D002168 ORTHO05D002277 1.1e-10 70.9 71 54.9
MD12G1011400 Malus domestica HOM05D002168 ORTHO05D002277 1.1e-10 70.9 71 56.3
MD14G1008000 Malus domestica HOM05D002168 ORTHO05D002277 1.1e-10 70.9 71 56.3
Nn2g14555 Nelumbo nucifera HOM05D002168 ORTHO05D002277 1.1e-10 70.9 71 53.5
Nitab4.5_0005671g0040 Nicotiana tabacum HOM05D002168 ORTHO05D002277 1.1e-10 70.9 71 53.5
Lsat_1_v5_gn_2_103701 Lactuca sativa HOM05D002168 ORTHO05D002277 1.4e-10 70.5 71 54.9
vmacro07652 Vaccinium macrocarpon HOM05D002168 ORTHO05D002277 1.4e-10 70.5 71 53.5
Aa31LG5G14220 Aethionema arabicum HOM05D002168 ORTHO05D002277 1.9e-10 70.1 71 50.7
Sabra13G0057400 Salix brachista HOM05D002168 ORTHO05D002277 1.9e-10 70.1 71 53.5
CDE07G0416 Ceratophyllum demersum HOM05D002168 ORTHO05D002277 2.5e-10 69.7 71 50.7
Medtr7g086640 Medicago truncatula HOM05D002168 ORTHO05D002277 3.2e-10 69.3 71 56.3
Os07g0168000 Oryza sativa ssp. japonica HOM05D002168 ORTHO05D002277 3.2e-10 69.3 71 53.5
Duzib177G0738 Durio zibethinus HOM05D002168 ORTHO05D002277 4.2e-10 68.9 71 53.5
Lj1g0016812 Lotus japonicus HOM05D002168 ORTHO05D002277 4.2e-10 68.9 71 54.9
TWI32G0897 Tripterygium wilfordii HOM05D002168 ORTHO05D002277 4.2e-10 68.9 71 52.1
Rhsim03G0049500 Rhododendron simsii HOM05D002168 ORTHO05D002277 5.5e-10 68.6 71 52.1
Eucgr.A02140 Eucalyptus grandis HOM05D002168 ORTHO05D002277 7.1e-10 68.2 71 53.5
PSO339G1487 Papaver somniferum HOM05D002168 ORTHO05D002277 7.1e-10 68.2 71 53.5
PSO384G3331 Papaver somniferum HOM05D002168 ORTHO05D002277 7.1e-10 68.2 71 53.5
Sp3g02680 Schrenkiella parvula HOM05D002168 ORTHO05D002277 7.1e-10 68.2 71 49.3
ATR0697G078 Amborella trichopoda HOM05D002168 ORTHO05D002277 9.3e-10 67.8 71 50.7
AL3G13510 Arabidopsis lyrata HOM05D002168 ORTHO05D002277 9.3e-10 67.8 71 49.3
AT3G03710 Arabidopsis thaliana HOM05D002168 ORTHO05D002277 9.3e-10 67.8 71 49.3
BcaB04g19361 Brassica carinata HOM05D002168 ORTHO05D002277 9.3e-10 67.8 71 49.3
BcaC01g04394 Brassica carinata HOM05D002168 ORTHO05D002277 9.3e-10 67.8 71 49.3
BcaC05g30255 Brassica carinata HOM05D002168 ORTHO05D002277 9.3e-10 67.8 71 49.3
A03p33360 Brassica napus HOM05D002168 ORTHO05D002277 9.3e-10 67.8 71 49.3
A05p43660 Brassica napus HOM05D002168 ORTHO05D002277 9.3e-10 67.8 71 49.3
C03p40600 Brassica napus HOM05D002168 ORTHO05D002277 9.3e-10 67.8 71 49.3
C05p63240 Brassica napus HOM05D002168 ORTHO05D002277 9.3e-10 67.8 71 49.3
BolC3t16325H Brassica oleracea HOM05D002168 ORTHO05D002277 9.3e-10 67.8 71 49.3
BolC5t34986H Brassica oleracea HOM05D002168 ORTHO05D002277 9.3e-10 67.8 71 49.3
BraA03t12507Z Brassica rapa HOM05D002168 ORTHO05D002277 9.3e-10 67.8 71 49.3
BraA05t23104Z Brassica rapa HOM05D002168 ORTHO05D002277 9.3e-10 67.8 71 49.3
Carub.0003s0287 Capsella rubella HOM05D002168 ORTHO05D002277 9.3e-10 67.8 71 49.3
CARHR077770 Cardamine hirsuta HOM05D002168 ORTHO05D002277 9.3e-10 67.8 71 49.3
Thhalv10020014m.g Eutrema salsugineum HOM05D002168 ORTHO05D002277 9.3e-10 67.8 71 49.3
Glyma.19G116700 Glycine max HOM05D002168 ORTHO05D002277 9.3e-10 67.8 71 54.9
Zm00001eb300920 Zea mays HOM05D002168 ORTHO05D002277 9.3e-10 67.8 71 52.1
Cc06_g21470 Coffea canephora HOM05D002168 ORTHO05D002277 1.2e-09 67.4 84 47.6
EL10Ac3g06617 Beta vulgaris HOM05D002168 ORTHO05D002277 1.6e-09 67.0 71 53.5
ECA238G2164 Erigeron canadensis HOM05D002168 ORTHO05D002277 1.6e-09 67.0 71 52.1
HanXRQChr14g0453641 Helianthus annuus HOM05D002168 ORTHO05D002277 1.6e-09 67.0 100 44.0
PGR042G1483 Punica granatum HOM05D002168 ORTHO05D002277 1.6e-09 67.0 71 53.5
Thecc.05G242400 Theobroma cacao HOM05D002168 ORTHO05D002277 1.6e-09 67.0 71 52.1
HanXRQChr07g0196271 Helianthus annuus HOM05D002168 ORTHO05D002277 2.1e-09 66.6 71 52.1
THA.LOC104802884 Tarenaya hassleriana HOM05D002168 ORTHO05D002277 2.1e-09 66.6 71 47.9
Oeu044206.2 Olea europaea HOM05D002168 ORTHO05D002277 2.7e-09 66.2 71 52.1
SGA_v2.0_scaffold69G23217 Striga asiatica HOM05D002168 ORTHO05D002277 2.7e-09 66.2 71 50.7
HanXRQChr15g0496011 Helianthus annuus HOM05D002168 ORTHO05D002277 3.5e-09 65.9 71 52.1
AagrBONN_evm.TU.Sc2ySwM_340.482 Anthoceros agrestis HOM05D002168 ORTHO05D002277 4.6e-09 65.5 71 49.3
Sc07g0007450 Simmondsia chinensis HOM05D002168 ORTHO05D002277 4.6e-09 65.5 71 52.1
Pp3c6_15550 Physcomitrium patens HOM05D002168 ORTHO05D002277 6.1e-09 65.1 71 49.3
DCAR_016962 Daucus carota HOM05D002168 ORTHO05D002277 7.9e-09 64.7 71 50.7
Migut.J01542 Erythranthe guttata HOM05D002168 ORTHO05D002277 7.9e-09 64.7 71 49.3
SMO364G0479 Selaginella moellendorffii HOM05D002168 ORTHO05D002277 7.9e-09 64.7 69 50.7
GSVIVG01029958001 Vitis vinifera HOM05D002168 ORTHO05D002277 7.9e-09 64.7 71 52.1
HPP92_026508 Vanilla planifolia HOM05D002168 ORTHO05D002277 1.0e-08 64.3 73 50.7
HPP92_014138 Vanilla planifolia HOM05D002168 ORTHO05D002277 2.3e-08 63.2 71 50.7
HPP92_014245 Vanilla planifolia HOM05D002168 ORTHO05D002277 2.3e-08 63.2 71 50.7
Cre04.g214501 Chlamydomonas reinhardtii HOM05D002168 ORTHO05D002277 6.7e-08 61.6 66 51.5
Mapoly0041s0034 Marchantia polymorpha HOM05D002168 ORTHO05D002277 1.1e-07 60.8 71 46.5
CBR_g5744 Chara braunii HOM05D002168 ORTHO05D002277 1.9e-07 60.1 71 46.5
MCO09G785 Micromonas commoda HOM05D002168 ORTHO05D002277 2.5e-07 59.7 69 50.7
CBR_g30163 Chara braunii HOM05D002168 ORTHO05D002277 6.3e-06 55.1 72 44.4
PRCOL_00002921 Prasinoderma coloniale HOM05D002168 ORTHO05D002277 6.3e-06 55.1 70 41.4
Lsat_1_v5_gn_0_46020 Lactuca sativa HOM05D002168 ORTHO05D002277 8.2e-06 54.7 64 48.4
Lj1A1072T24 Lonicera japonica HOM05D002168 ORTHO05D002277 8.2e-06 54.7 62 50.0


User provided reference genes

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