Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C034647.2 Cucumis melo HOM05D001013 ORTHO05D004597 3.4e-13 77.0 38 100.0
ClCG03G013290 Citrullus lanatus HOM05D001013 ORTHO05D004597 1.4e-11 71.6 35 97.1
MELO3C015199.2 Cucumis melo HOM05D001013 ORTHO05D004597 1.4e-11 71.6 35 97.1
CsaV3_1G042760 Cucumis sativus L. HOM05D001013 ORTHO05D004597 1.4e-11 71.6 35 97.1
Aa31LG2G15640 Aethionema arabicum HOM05D001013 ORTHO05D004597 3.2e-11 70.5 35 94.3
BcaNung00646 Brassica carinata HOM05D001013 ORTHO05D004597 3.2e-11 70.5 35 94.3
A01p03620 Brassica napus HOM05D001013 ORTHO05D004597 3.2e-11 70.5 35 94.3
C01p03910 Brassica napus HOM05D001013 ORTHO05D004597 3.2e-11 70.5 35 94.3
BolC1t00384H Brassica oleracea HOM05D001013 ORTHO05D004597 3.2e-11 70.5 35 94.3
BraA01t00348Z Brassica rapa HOM05D001013 ORTHO05D004597 3.2e-11 70.5 35 94.3
Sp7g32650 Schrenkiella parvula HOM05D001013 ORTHO05D004597 3.2e-11 70.5 35 94.3
Sed0014521 Sechium edule HOM05D001013 ORTHO05D004597 3.2e-11 70.5 35 94.3
CARHR243170 Cardamine hirsuta HOM05D001013 ORTHO05D004597 4.2e-11 70.1 35 91.4
Cc07_g19600 Coffea canephora HOM05D001013 ORTHO05D004597 4.2e-11 70.1 35 91.4
MELO3C016640.2 Cucumis melo HOM05D001013 ORTHO05D004597 5.5e-11 69.7 35 91.4
arahy.Tifrunner.gnm1.ann1.EX6ZD6 Arachis hypogaea HOM05D001013 ORTHO05D004597 7.1e-11 69.3 35 91.4
arahy.Tifrunner.gnm1.ann1.I21QA9 Arachis hypogaea HOM05D001013 ORTHO05D004597 7.1e-11 69.3 35 91.4
Carub.0007s0540 Capsella rubella HOM05D001013 ORTHO05D004597 7.1e-11 69.3 35 91.4
Thhalv10024224m.g Eutrema salsugineum HOM05D001013 ORTHO05D004597 7.1e-11 69.3 35 91.4
MD11G1161000 Malus domestica HOM05D001013 ORTHO05D004597 7.1e-11 69.3 35 91.4
Phvul.L009543 Phaseolus vulgaris HOM05D001013 ORTHO05D004597 7.1e-11 69.3 35 91.4
VMungo1080G0609 Vigna mungo HOM05D001013 ORTHO05D004597 7.1e-11 69.3 35 91.4
AL7G16310 Arabidopsis lyrata HOM05D001013 ORTHO05D004597 9.3e-11 68.9 35 88.6
AT4G34890 Arabidopsis thaliana HOM05D001013 ORTHO05D004597 9.3e-11 68.9 35 88.6
EL10Ac4g10130 Beta vulgaris HOM05D001013 ORTHO05D004597 1.6e-10 68.2 35 91.4
EL10Ac4g10159 Beta vulgaris HOM05D001013 ORTHO05D004597 1.6e-10 68.2 35 91.4
CSS0021836 Camellia sinensis var. sinensis HOM05D001013 ORTHO05D004597 1.6e-10 68.2 35 91.4
Ca_01292_v3 Cicer arietinum L. HOM05D001013 ORTHO05D004597 1.6e-10 68.2 35 91.4
Dinv36267 Davidia involucrata HOM05D001013 ORTHO05D004597 1.6e-10 68.2 35 91.4
Glyma.13G340300 Glycine max HOM05D001013 ORTHO05D004597 1.6e-10 68.2 35 91.4
Glyma.15G034000 Glycine max HOM05D001013 ORTHO05D004597 1.6e-10 68.2 35 91.4
Lalb_Chr24g0397071 Lupinus albus HOM05D001013 ORTHO05D004597 1.6e-10 68.2 35 91.4
Medtr2g098030 Medicago truncatula HOM05D001013 ORTHO05D004597 1.6e-10 68.2 35 91.4
Psat5g286360 Pisum sativum HOM05D001013 ORTHO05D004597 1.6e-10 68.2 35 91.4
Prupe.4G245700 Prunus persica HOM05D001013 ORTHO05D004597 1.6e-10 68.2 35 88.6
Rhsim13G0222300 Rhododendron simsii HOM05D001013 ORTHO05D004597 1.6e-10 68.2 35 91.4
TPR.G6821 Trifolium pratense HOM05D001013 ORTHO05D004597 1.6e-10 68.2 35 91.4
EL10Ac4g10268 Beta vulgaris HOM05D001013 ORTHO05D004597 2.1e-10 67.8 35 88.6
EL10Ac4g10284 Beta vulgaris HOM05D001013 ORTHO05D004597 2.1e-10 67.8 35 88.6
CiPaw.14G119800 Carya illinoinensis HOM05D001013 ORTHO05D004597 2.1e-10 67.8 35 88.6
Ciclev10014051m.g Citrus clementina HOM05D001013 ORTHO05D004597 2.1e-10 67.8 35 88.6
Haze_23121 Corylus avellana HOM05D001013 ORTHO05D004597 2.1e-10 67.8 35 88.6
MELO3C014095.2 Cucumis melo HOM05D001013 ORTHO05D004597 2.1e-10 67.8 35 91.4
Duzib170G0402 Durio zibethinus HOM05D001013 ORTHO05D004597 2.1e-10 67.8 35 85.7
Gohir.A09G114800 Gossypium hirsutum HOM05D001013 ORTHO05D004597 2.1e-10 67.8 35 88.6
Gohir.D09G111500 Gossypium hirsutum HOM05D001013 ORTHO05D004597 2.1e-10 67.8 35 88.6
Gorai.006G129200 Gossypium raimondii HOM05D001013 ORTHO05D004597 2.1e-10 67.8 35 88.6
Sabra09G0039900 Salix brachista HOM05D001013 ORTHO05D004597 2.1e-10 67.8 35 88.6
THA.LOC104817905 Tarenaya hassleriana HOM05D001013 ORTHO05D004597 2.1e-10 67.8 35 85.7
ATR0605G208 Amborella trichopoda HOM05D001013 ORTHO05D004597 2.7e-10 67.4 35 88.6
Lj3g0023347 Lotus japonicus HOM05D001013 ORTHO05D004597 2.7e-10 67.4 35 88.6
vmacro04203 Vaccinium macrocarpon HOM05D001013 ORTHO05D004597 2.7e-10 67.4 35 91.4
QL01p005011 Quercus lobata HOM05D001013 ORTHO05D004597 3.5e-10 67.0 35 85.7
Thecc.09G231300 Theobroma cacao HOM05D001013 ORTHO05D004597 3.5e-10 67.0 35 88.6
TWI34G0448 Tripterygium wilfordii HOM05D001013 ORTHO05D004597 3.5e-10 67.0 35 88.6
unitig_90.g27489 Utricularia gibba HOM05D001013 ORTHO05D004597 3.5e-10 67.0 35 85.7
CANSAT01G2178 Cannabis sativa HOM05D001013 ORTHO05D004597 4.6e-10 66.6 35 85.7
Cpa.g.sc84.69 Carica papaya HOM05D001013 ORTHO05D004597 4.6e-10 66.6 35 85.7
DCAR_002067 Daucus carota HOM05D001013 ORTHO05D004597 4.6e-10 66.6 35 88.6
Lsat_1_v5_gn_2_97481 Lactuca sativa HOM05D001013 ORTHO05D004597 4.6e-10 66.6 35 88.6
Lj2A632G19 Lonicera japonica HOM05D001013 ORTHO05D004597 4.6e-10 66.6 35 88.6
Nn2g15465 Nelumbo nucifera HOM05D001013 ORTHO05D004597 4.6e-10 66.6 35 85.7
Potri.009G054600 Populus trichocarpa HOM05D001013 ORTHO05D004597 4.6e-10 66.6 35 85.7
Eucgr.J00780 Eucalyptus grandis HOM05D001013 ORTHO05D004597 6.0e-10 66.2 35 88.6
PGR119G0568 Punica granatum HOM05D001013 ORTHO05D004597 6.0e-10 66.2 35 85.7
TAR636G2042 Trochodendron aralioides HOM05D001013 ORTHO05D004597 6.0e-10 66.2 35 85.7
Zm00001eb021020 Zea mays HOM05D001013 ORTHO05D004597 6.0e-10 66.2 36 80.6
AT4G34900 Arabidopsis thaliana HOM05D001013 ORTHO05D004597 7.9e-10 65.9 35 85.7
MD11G1197900 Malus domestica HOM05D001013 ORTHO05D004597 7.9e-10 65.9 35 85.7
Atru.chr3.2746 Acer truncatum HOM05D001013 ORTHO05D004597 1.0e-09 65.5 35 85.7
Actinidia16323 Actinidia chinensis HOM05D001013 ORTHO05D004597 1.0e-09 65.5 35 88.6
Ah.06g194350 Amaranthus hybridus HOM05D001013 ORTHO05D004597 1.0e-09 65.5 35 85.7
Aqoxy1G00274 Aquilegia oxysepala HOM05D001013 ORTHO05D004597 1.0e-09 65.5 35 85.7
Migut.D00593 Erythranthe guttata HOM05D001013 ORTHO05D004597 1.0e-09 65.5 35 85.7
Eucgr.J00782 Eucalyptus grandis HOM05D001013 ORTHO05D004597 1.0e-09 65.5 35 88.6
Hund22038 Selenicereus undatus HOM05D001013 ORTHO05D004597 1.3e-09 65.1 35 85.7
GSVIVG01025282001 Vitis vinifera HOM05D001013 ORTHO05D004597 1.3e-09 65.1 34 88.2
Manes.06G165500 Manihot esculenta HOM05D001013 ORTHO05D004597 1.8e-09 64.7 35 82.9
MSTRG.18423 Avicennia marina HOM05D001013 ORTHO05D004597 2.3e-09 64.3 35 82.9
CAN.G327.12 Capsicum annuum HOM05D001013 ORTHO05D004597 3.0e-09 63.9 35 82.9
Cfa009756 Carpinus fangiana HOM05D001013 ORTHO05D004597 3.9e-09 63.5 35 85.7
Lsat_1_v5_gn_2_97521 Lactuca sativa HOM05D001013 ORTHO05D004597 3.9e-09 63.5 35 82.9
PSO384G0041 Papaver somniferum HOM05D001013 ORTHO05D004597 3.9e-09 63.5 35 82.9
PSO384G2146 Papaver somniferum HOM05D001013 ORTHO05D004597 3.9e-09 63.5 35 82.9
SMO351G0580 Selaginella moellendorffii HOM05D001013 ORTHO05D004597 3.9e-09 63.5 35 85.7
SGA_v2.0_scaffold247G44871 Striga asiatica HOM05D001013 ORTHO05D004597 3.9e-09 63.5 35 80.0
AL6G50970 Arabidopsis lyrata HOM05D001013 ORTHO05D004597 5.1e-09 63.2 35 85.7
AUR62000107 Chenopodium quinoa HOM05D001013 ORTHO05D004597 5.1e-09 63.2 35 82.9
AUR62019282 Chenopodium quinoa HOM05D001013 ORTHO05D004597 5.1e-09 63.2 35 82.9
SEGI_30496 Sequoiadendron giganteum HOM05D001013 ORTHO05D004597 5.1e-09 63.2 36 80.6
Sc06g0004540 Simmondsia chinensis HOM05D001013 ORTHO05D004597 5.1e-09 63.2 35 80.0
arahy.Tifrunner.gnm1.ann1.V5338L Arachis hypogaea HOM05D001013 ORTHO05D004597 6.7e-09 62.8 35 85.7
SHI29744 Sapria himalayana HOM05D001013 ORTHO05D004597 6.7e-09 62.8 35 80.0
Hma1.2p1_0861F.1_g229790 Hydrangea macrophylla HOM05D001013 ORTHO05D004597 8.7e-09 62.4 35 82.9
AagrBONN_evm.TU.Sc2ySwM_228.138 Anthoceros agrestis HOM05D001013 ORTHO05D004597 1.1e-08 62.0 34 82.4
FvH4_3g29000 Fragaria vesca HOM05D001013 ORTHO05D004597 1.1e-08 62.0 35 80.0
FAN11G2909 Fragaria x ananassa HOM05D001013 ORTHO05D004597 1.1e-08 62.0 35 80.0
FAN21G2353 Fragaria x ananassa HOM05D001013 ORTHO05D004597 1.1e-08 62.0 35 80.0
FAN25G0972 Fragaria x ananassa HOM05D001013 ORTHO05D004597 1.1e-08 62.0 35 80.0
Pp3c20_16340 Physcomitrium patens HOM05D001013 ORTHO05D004597 1.1e-08 62.0 36 75.0
TAR633G1179 Trochodendron aralioides HOM05D001013 ORTHO05D004597 1.5e-08 61.6 35 80.0
COL.COLO4_24880 Corchorus olitorius HOM05D001013 ORTHO05D004597 1.9e-08 61.2 35 77.1
Os03g0429800 Oryza sativa ssp. japonica HOM05D001013 ORTHO05D004597 2.5e-08 60.8 35 74.3
RcHm_v2.0_Chr5g0051661 Rosa chinensis HOM05D001013 ORTHO05D004597 2.5e-08 60.8 35 80.0
Solyc11g065920.2 Solanum lycopersicum HOM05D001013 ORTHO05D004597 3.3e-08 60.5 35 80.0
Sopen11g025660 Solanum pennellii HOM05D001013 ORTHO05D004597 3.3e-08 60.5 35 80.0
A09p01610 Brassica napus HOM05D001013 ORTHO05D004597 4.3e-08 60.1 35 80.0
C09p01710 Brassica napus HOM05D001013 ORTHO05D004597 4.3e-08 60.1 35 80.0
BolC9t53105H Brassica oleracea HOM05D001013 ORTHO05D004597 4.3e-08 60.1 35 80.0
Mapoly0014s0136 Marchantia polymorpha HOM05D001013 ORTHO05D004597 4.3e-08 60.1 35 77.1
HPP92_023576 Vanilla planifolia HOM05D001013 ORTHO05D004597 4.3e-08 60.1 35 74.3
A09p01640 Brassica napus HOM05D001013 ORTHO05D004597 5.7e-08 59.7 35 77.1
Nitab4.5_0001800g0150 Nicotiana tabacum HOM05D001013 ORTHO05D004597 5.7e-08 59.7 35 80.0
BcaB01g02072 Brassica carinata HOM05D001013 ORTHO05D004597 7.4e-08 59.3 35 77.1
CARHR250380 Cardamine hirsuta HOM05D001013 ORTHO05D004597 7.4e-08 59.3 35 80.0
CDE05G3370 Ceratophyllum demersum HOM05D001013 ORTHO05D004597 7.4e-08 59.3 35 74.3
BcaC04g24043 Brassica carinata HOM05D001013 ORTHO05D004597 9.6e-08 58.9 35 77.1
BraA09t35819Z Brassica rapa HOM05D001013 ORTHO05D004597 9.6e-08 58.9 35 77.1
ECA238G2169 Erigeron canadensis HOM05D001013 ORTHO05D004597 9.6e-08 58.9 35 77.1
ECA238G2654 Erigeron canadensis HOM05D001013 ORTHO05D004597 1.3e-07 58.5 35 80.0
Nitab4.5_0006994g0020 Nicotiana tabacum HOM05D001013 ORTHO05D004597 1.6e-07 58.2 35 77.1
Peaxi162Scf01427g00007 Petunia axillaris HOM05D001013 ORTHO05D004597 2.1e-07 57.8 35 80.0
CBR_g30957 Chara braunii HOM05D001013 ORTHO05D004597 3.1e-06 53.9 35 65.7
MCO15G310 Micromonas commoda HOM05D001013 ORTHO05D004597 5.3e-06 53.1 35 62.9


User provided reference genes

Program Settings