Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C033715.2 Cucumis melo HOM05D005156 ORTHO05D006710 4.3e-26 120.6 61 100.0
CsaV3_1G043140 Cucumis sativus L. HOM05D005156 ORTHO05D006710 3.2e-21 104.4 61 86.9
MD11G1196200 Malus domestica HOM05D005156 ORTHO05D006710 3.2e-21 104.4 61 86.9
Sed0002302 Sechium edule HOM05D005156 ORTHO05D006710 3.2e-21 104.4 61 86.9
MELO3C015153.2 Cucumis melo HOM05D005156 ORTHO05D006710 4.2e-21 104.0 61 85.2
Cfa009832 Carpinus fangiana HOM05D005156 ORTHO05D006710 5.5e-21 103.6 61 83.6
Haze_23195 Corylus avellana HOM05D005156 ORTHO05D006710 9.3e-21 102.8 61 83.6
Gohir.A07G121700 Gossypium hirsutum HOM05D005156 ORTHO05D006710 9.3e-21 102.8 61 83.6
Gohir.D07G126000 Gossypium hirsutum HOM05D005156 ORTHO05D006710 9.3e-21 102.8 61 83.6
Gorai.001G136000 Gossypium raimondii HOM05D005156 ORTHO05D006710 9.3e-21 102.8 61 83.6
QL01p017825 Quercus lobata HOM05D005156 ORTHO05D006710 9.3e-21 102.8 61 83.6
CiPaw.13G153000 Carya illinoinensis HOM05D005156 ORTHO05D006710 1.2e-20 102.4 61 83.6
Thecc.09G243300 Theobroma cacao HOM05D005156 ORTHO05D006710 1.2e-20 102.4 61 85.2
EL10Ac4g10175 Beta vulgaris HOM05D005156 ORTHO05D006710 2.7e-20 101.3 61 80.3
CSS0001612 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 2.7e-20 101.3 61 83.6
CANSAT54G2883 Cannabis sativa HOM05D005156 ORTHO05D006710 2.7e-20 101.3 61 83.6
FvH4_3g28170 Fragaria vesca HOM05D005156 ORTHO05D006710 2.7e-20 101.3 61 83.6
FAN11G0102 Fragaria x ananassa HOM05D005156 ORTHO05D006710 2.7e-20 101.3 61 83.6
FAN16G2156 Fragaria x ananassa HOM05D005156 ORTHO05D006710 2.7e-20 101.3 61 83.6
FAN21G2369 Fragaria x ananassa HOM05D005156 ORTHO05D006710 2.7e-20 101.3 61 83.6
FAN25G0057 Fragaria x ananassa HOM05D005156 ORTHO05D006710 2.7e-20 101.3 61 83.6
RcHm_v2.0_Chr5g0050911 Rosa chinensis HOM05D005156 ORTHO05D006710 2.7e-20 101.3 61 83.6
CSS0030488 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 3.6e-20 100.9 61 82.0
Potri.001G254000 Populus trichocarpa HOM05D005156 ORTHO05D006710 3.6e-20 100.9 61 83.6
TAR626G1548 Trochodendron aralioides HOM05D005156 ORTHO05D006710 3.6e-20 100.9 61 83.6
ClCG03G012920 Citrullus lanatus HOM05D005156 ORTHO05D006710 4.6e-20 100.5 61 85.2
Sabra16G0154700 Salix brachista HOM05D005156 ORTHO05D006710 6.1e-20 100.1 61 83.6
SGA_v2.0_scaffold29G12276 Striga asiatica HOM05D005156 ORTHO05D006710 6.1e-20 100.1 61 82.0
Atru.chr3.2617 Acer truncatum HOM05D005156 ORTHO05D006710 7.9e-20 99.8 61 82.0
AUR62000172 Chenopodium quinoa HOM05D005156 ORTHO05D006710 7.9e-20 99.8 61 80.3
Ca_12758_v3 Cicer arietinum L. HOM05D005156 ORTHO05D006710 7.9e-20 99.8 61 82.0
Lj3g0017854 Lotus japonicus HOM05D005156 ORTHO05D006710 7.9e-20 99.8 61 82.0
MELO3C030656.2 Cucumis melo HOM05D005156 ORTHO05D006710 1.0e-19 99.4 62 85.5
Lalb_Chr10g0094741 Lupinus albus HOM05D005156 ORTHO05D006710 1.0e-19 99.4 61 80.3
Manes.15G112800 Manihot esculenta HOM05D005156 ORTHO05D006710 1.0e-19 99.4 61 82.0
Rhsim13G0216600 Rhododendron simsii HOM05D005156 ORTHO05D006710 1.0e-19 99.4 61 80.3
MELO3C034160.2 Cucumis melo HOM05D005156 ORTHO05D006710 1.3e-19 99.0 62 82.3
Lj2C684T3 Lonicera japonica HOM05D005156 ORTHO05D006710 1.3e-19 99.0 61 82.0
Sc16g0011170 Simmondsia chinensis HOM05D005156 ORTHO05D006710 1.3e-19 99.0 61 78.7
VMungo1383G1089 Vigna mungo HOM05D005156 ORTHO05D006710 1.3e-19 99.0 61 80.3
Dinv22149 Davidia involucrata HOM05D005156 ORTHO05D006710 1.8e-19 98.6 61 82.0
Glyma.09G002700 Glycine max HOM05D005156 ORTHO05D006710 1.8e-19 98.6 61 80.3
Os08g0504400 Oryza sativa ssp. japonica HOM05D005156 ORTHO05D006710 2.3e-19 98.2 61 82.0
Cpa.g.sc84.13 Carica papaya HOM05D005156 ORTHO05D006710 3.9e-19 97.4 61 80.3
AUR62039839 Chenopodium quinoa HOM05D005156 ORTHO05D006710 3.9e-19 97.4 61 78.7
Cc01_g05890 Coffea canephora HOM05D005156 ORTHO05D006710 3.9e-19 97.4 61 80.3
Ah.06g194400 Amaranthus hybridus HOM05D005156 ORTHO05D006710 5.1e-19 97.1 61 77.0
GSVIVG01037376001 Vitis vinifera HOM05D005156 ORTHO05D006710 5.1e-19 97.1 61 82.0
Actinidia16358 Actinidia chinensis HOM05D005156 ORTHO05D006710 6.7e-19 96.7 61 80.3
ATR0751G133 Amborella trichopoda HOM05D005156 ORTHO05D006710 6.7e-19 96.7 61 82.0
arahy.Tifrunner.gnm1.ann1.9TL5ZW Arachis hypogaea HOM05D005156 ORTHO05D006710 6.7e-19 96.7 61 78.7
arahy.Tifrunner.gnm1.ann1.KCM926 Arachis hypogaea HOM05D005156 ORTHO05D006710 6.7e-19 96.7 61 78.7
Ciclev10015838m.g Citrus clementina HOM05D005156 ORTHO05D006710 6.7e-19 96.7 61 78.7
Medtr4g031220 Medicago truncatula HOM05D005156 ORTHO05D006710 6.7e-19 96.7 61 78.7
Hma1.2p1_1115F.1_g258845 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 8.7e-19 96.3 61 80.3
Nn1g08054 Nelumbo nucifera HOM05D005156 ORTHO05D006710 8.7e-19 96.3 61 80.3
Oeu001490.1 Olea europaea HOM05D005156 ORTHO05D006710 8.7e-19 96.3 61 78.7
unitig_90.g27461 Utricularia gibba HOM05D005156 ORTHO05D006710 8.7e-19 96.3 60 80.0
Hund21990 Selenicereus undatus HOM05D005156 ORTHO05D006710 1.1e-18 95.9 61 78.7
vmacro04002 Vaccinium macrocarpon HOM05D005156 ORTHO05D006710 1.1e-18 95.9 61 77.0
DCAR_002091 Daucus carota HOM05D005156 ORTHO05D006710 1.5e-18 95.5 61 80.3
Eucgr.J00726 Eucalyptus grandis HOM05D005156 ORTHO05D006710 1.5e-18 95.5 61 77.0
Aqoxy8s002 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 2.5e-18 94.7 61 77.0
Migut.D00644 Erythranthe guttata HOM05D005156 ORTHO05D006710 2.5e-18 94.7 61 78.7
MBI15_g27827_MAGBIO Magnolia biondii HOM05D005156 ORTHO05D006710 2.5e-18 94.7 61 80.3
MSTRG.18451 Avicennia marina HOM05D005156 ORTHO05D006710 3.3e-18 94.4 61 75.4
Hma1.2p1_2309F.1_g319520 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 3.3e-18 94.4 61 78.7
Zm00001eb251060 Zea mays HOM05D005156 ORTHO05D006710 5.7e-18 93.6 61 75.4
HanXRQChr06g0183211 Helianthus annuus HOM05D005156 ORTHO05D006710 7.4e-18 93.2 61 77.0
Lsat_1_v5_gn_2_29420 Lactuca sativa HOM05D005156 ORTHO05D006710 9.7e-18 92.8 61 72.1
PSO210G0499 Papaver somniferum HOM05D005156 ORTHO05D006710 9.7e-18 92.8 61 75.4
PSO210G1653 Papaver somniferum HOM05D005156 ORTHO05D006710 9.7e-18 92.8 61 75.4
Psat7g227760 Pisum sativum HOM05D005156 ORTHO05D006710 1.3e-17 92.4 60 75.0
HPP92_001936 Vanilla planifolia HOM05D005156 ORTHO05D006710 1.3e-17 92.4 61 77.0
Prupe.4G258300 Prunus persica HOM05D005156 ORTHO05D006710 1.6e-17 92.0 61 80.3
SHI21395 Sapria himalayana HOM05D005156 ORTHO05D006710 1.6e-17 92.0 61 73.8
Solyc11g033260.2 Solanum lycopersicum HOM05D005156 ORTHO05D006710 2.2e-17 91.7 61 75.4
Sopen11g015730 Solanum pennellii HOM05D005156 ORTHO05D006710 2.2e-17 91.7 61 75.4
PGSC0003DMG400019760 Solanum tuberosum HOM05D005156 ORTHO05D006710 2.2e-17 91.7 61 75.4
CAN.G1323.2 Capsicum annuum HOM05D005156 ORTHO05D006710 3.7e-17 90.9 61 75.4
MELO3C034654.2 Cucumis melo HOM05D005156 ORTHO05D006710 3.7e-17 90.9 62 79.0
Phvul.011G080400 Phaseolus vulgaris HOM05D005156 ORTHO05D006710 3.7e-17 90.9 61 72.1
Peaxi162Scf00473g00218 Petunia axillaris HOM05D005156 ORTHO05D006710 4.8e-17 90.5 61 77.0
CDE12G0606 Ceratophyllum demersum HOM05D005156 ORTHO05D006710 1.1e-16 89.4 61 77.0
PGR119G1881 Punica granatum HOM05D005156 ORTHO05D006710 1.1e-16 89.4 61 75.4
Nitab4.5_0006419g0030 Nicotiana tabacum HOM05D005156 ORTHO05D006710 1.8e-16 88.6 61 75.4
TPR.G34160 Trifolium pratense HOM05D005156 ORTHO05D006710 1.8e-16 88.6 61 72.1
Nitab4.5_0002113g0190 Nicotiana tabacum HOM05D005156 ORTHO05D006710 3.1e-16 87.8 61 73.8
SMO147G0151 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 5.3e-16 87.0 61 70.5
SMO273G0012 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 5.3e-16 87.0 61 70.5
Mapoly0048s0046 Marchantia polymorpha HOM05D005156 ORTHO05D006710 6.9e-16 86.7 61 72.1
THA.LOC104804468 Tarenaya hassleriana HOM05D005156 ORTHO05D006710 6.9e-16 86.7 61 73.8
AL1G58170 Arabidopsis lyrata HOM05D005156 ORTHO05D006710 9.0e-16 86.3 61 72.1
AT1G50510 Arabidopsis thaliana HOM05D005156 ORTHO05D006710 9.0e-16 86.3 61 72.1
BcaB02g11155 Brassica carinata HOM05D005156 ORTHO05D006710 9.0e-16 86.3 61 72.1
BcaB07g33488 Brassica carinata HOM05D005156 ORTHO05D006710 9.0e-16 86.3 61 72.1
BcaC05g27410 Brassica carinata HOM05D005156 ORTHO05D006710 9.0e-16 86.3 61 72.1
BcaC08g43222 Brassica carinata HOM05D005156 ORTHO05D006710 9.0e-16 86.3 61 72.1
A05p20090 Brassica napus HOM05D005156 ORTHO05D006710 9.0e-16 86.3 61 72.1
A06p03060 Brassica napus HOM05D005156 ORTHO05D006710 9.0e-16 86.3 61 72.1
C05p33580 Brassica napus HOM05D005156 ORTHO05D006710 9.0e-16 86.3 61 72.1
C06p05700 Brassica napus HOM05D005156 ORTHO05D006710 9.0e-16 86.3 61 72.1
BolC5t32085H Brassica oleracea HOM05D005156 ORTHO05D006710 9.0e-16 86.3 61 72.1
BraA05t20917Z Brassica rapa HOM05D005156 ORTHO05D006710 9.0e-16 86.3 61 72.1
BraA06t23519Z Brassica rapa HOM05D005156 ORTHO05D006710 9.0e-16 86.3 61 72.1
CARHR040540 Cardamine hirsuta HOM05D005156 ORTHO05D006710 9.0e-16 86.3 61 72.1
Thhalv10011639m.g Eutrema salsugineum HOM05D005156 ORTHO05D006710 9.0e-16 86.3 61 72.1
Lj2C655T2 Lonicera japonica HOM05D005156 ORTHO05D006710 9.0e-16 86.3 53 83.0
Sp1g37360 Schrenkiella parvula HOM05D005156 ORTHO05D006710 9.0e-16 86.3 61 72.1
Aa31LG10G3780 Aethionema arabicum HOM05D005156 ORTHO05D006710 1.2e-15 85.9 61 70.5
Carub.0001s3958 Capsella rubella HOM05D005156 ORTHO05D006710 1.5e-15 85.5 61 72.1
ECA238G2265 Erigeron canadensis HOM05D005156 ORTHO05D006710 1.5e-15 85.5 61 68.9
MELO3C016526.2 Cucumis melo HOM05D005156 ORTHO05D006710 3.4e-15 84.3 56 80.4
AagrBONN_evm.TU.Sc2ySwM_368.760 Anthoceros agrestis HOM05D005156 ORTHO05D006710 4.5e-15 84.0 61 68.9
Pp3c21_8650 Physcomitrium patens HOM05D005156 ORTHO05D006710 4.5e-15 84.0 61 70.5
MELO3C030457.2 Cucumis melo HOM05D005156 ORTHO05D006710 5.9e-15 83.6 55 81.8
Aqoxy4G00402 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 1.7e-14 82.0 54 75.9
CBR_g12801 Chara braunii HOM05D005156 ORTHO05D006710 3.8e-14 80.9 60 66.7
MCO15G168 Micromonas commoda HOM05D005156 ORTHO05D006710 5.0e-14 80.5 60 63.3
Cre02.g144000 Chlamydomonas reinhardtii HOM05D005156 ORTHO05D006710 5.5e-13 77.0 61 62.3
PRCOL_00003626 Prasinoderma coloniale HOM05D005156 ORTHO05D006710 2.7e-12 74.7 60 61.7
EL10Ac2g04378 Beta vulgaris HOM05D005156 ORTHO05D006710 2.4e-08 61.6 55 50.9
EL10Ac3g06833 Beta vulgaris HOM05D005156 ORTHO05D006710 6.9e-08 60.1 55 49.1
Cfa025164 Carpinus fangiana HOM05D005156 ORTHO05D006710 3.4e-07 57.8 68 47.1
Haze_26247 Corylus avellana HOM05D005156 ORTHO05D006710 1.7e-06 55.5 54 53.7
EL10Ac2g02892 Beta vulgaris HOM05D005156 ORTHO05D039042 2.2e-06 55.1 42 64.3
BcaB02g11038 Brassica carinata HOM05D005156 ORTHO05D006710 6.5e-06 53.5 36 75.0


User provided reference genes

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