Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C033382.2 Cucumis melo HOM05D004883 ORTHO05D005766 1.3e-54 216.1 107 100.0
MELO3C016751.2 Cucumis melo HOM05D004883 ORTHO05D005766 5.3e-11 71.2 39 87.2
ClCG05G019880 Citrullus lanatus HOM05D004883 ORTHO05D005766 2.6e-10 68.9 37 86.5
CsaV3_4G034310 Cucumis sativus L. HOM05D004883 ORTHO05D005766 3.4e-10 68.6 37 83.8
Haze_17525 Corylus avellana HOM05D004883 ORTHO05D005766 7.6e-10 67.4 39 76.9
Lj5g0012185 Lotus japonicus HOM05D004883 ORTHO05D005766 7.6e-10 67.4 39 76.9
TPR.G3781 Trifolium pratense HOM05D004883 ORTHO05D005766 7.6e-10 67.4 39 76.9
arahy.Tifrunner.gnm1.ann1.09A9GY Arachis hypogaea HOM05D004883 ORTHO05D005766 1.3e-09 66.6 39 74.4
arahy.Tifrunner.gnm1.ann1.B0E7W8 Arachis hypogaea HOM05D004883 ORTHO05D005766 1.3e-09 66.6 39 74.4
QL02p004805 Quercus lobata HOM05D004883 ORTHO05D005766 1.7e-09 66.2 39 74.4
Glyma.14G082800 Glycine max HOM05D004883 ORTHO05D005766 2.2e-09 65.9 39 74.4
Phvul.001G022000 Phaseolus vulgaris HOM05D004883 ORTHO05D005766 2.2e-09 65.9 39 74.4
Psat1g147680 Pisum sativum HOM05D004883 ORTHO05D005766 2.2e-09 65.9 39 74.4
Prupe.1G435500 Prunus persica HOM05D004883 ORTHO05D005766 2.2e-09 65.9 39 71.8
CiPaw.16G043800 Carya illinoinensis HOM05D004883 ORTHO05D005766 2.9e-09 65.5 41 73.2
Lalb_Chr22g0355131 Lupinus albus HOM05D004883 ORTHO05D005766 2.9e-09 65.5 39 74.4
GSVIVG01009495001 Vitis vinifera HOM05D004883 ORTHO05D005766 2.9e-09 65.5 39 74.4
PGR031G0707 Punica granatum HOM05D004883 ORTHO05D005766 3.8e-09 65.1 39 71.8
Dinv35960 Davidia involucrata HOM05D004883 ORTHO05D005766 6.5e-09 64.3 39 71.8
Ca_13291_v3 Cicer arietinum L. HOM05D004883 ORTHO05D005766 8.4e-09 63.9 39 74.4
Eucgr.F02346 Eucalyptus grandis HOM05D004883 ORTHO05D005766 8.4e-09 63.9 39 69.2
Hma1.2p1_0982F.1_g244010 Hydrangea macrophylla HOM05D004883 ORTHO05D005766 8.4e-09 63.9 37 75.7
Cpa.g.sc49.21 Carica papaya HOM05D004883 ORTHO05D005766 1.4e-08 63.2 39 69.2
MD15G1083000 Malus domestica HOM05D004883 ORTHO05D005766 1.4e-08 63.2 39 71.8
TAR381G1103 Trochodendron aralioides HOM05D004883 ORTHO05D005766 1.4e-08 63.2 39 69.2
Ah.09g236860 Amaranthus hybridus HOM05D004883 ORTHO05D005766 1.9e-08 62.8 35 80.0
DCAR_020929 Daucus carota HOM05D004883 ORTHO05D005766 1.9e-08 62.8 39 71.8
Glyma.17G242300 Glycine max HOM05D004883 ORTHO05D005766 1.9e-08 62.8 39 71.8
MD00G1215600 Malus domestica HOM05D004883 ORTHO05D005766 1.9e-08 62.8 40 70.0
AUR62012534 Chenopodium quinoa HOM05D004883 ORTHO05D005766 2.5e-08 62.4 39 71.8
RcHm_v2.0_Chr6g0307931 Rosa chinensis HOM05D004883 ORTHO05D005766 2.5e-08 62.4 39 74.4
VMungo0647G0758 Vigna mungo HOM05D004883 ORTHO05D005766 2.5e-08 62.4 39 74.4
FvH4_2g34441 Fragaria vesca HOM05D004883 ORTHO05D005766 4.2e-08 61.6 39 71.8
MD08G1101600 Malus domestica HOM05D004883 ORTHO05D005766 4.2e-08 61.6 39 71.8
Sed0005554 Sechium edule HOM05D004883 ORTHO05D005766 4.2e-08 61.6 39 69.2
Solyc04g078920.3 Solanum lycopersicum HOM05D004883 ORTHO05D005766 4.2e-08 61.6 40 70.0
Sopen04g032520 Solanum pennellii HOM05D004883 ORTHO05D005766 4.2e-08 61.6 40 70.0
Atru.chr13.693 Acer truncatum HOM05D004883 ORTHO05D005766 5.5e-08 61.2 39 69.2
ECA232G2590 Erigeron canadensis HOM05D004883 ORTHO05D005766 5.5e-08 61.2 39 69.2
FAN15G1199 Fragaria x ananassa HOM05D004883 ORTHO05D005766 5.5e-08 61.2 35 80.0
HanXRQChr05g0150871 Helianthus annuus HOM05D004883 ORTHO05D005766 5.5e-08 61.2 39 71.8
Rhsim07G0228400 Rhododendron simsii HOM05D004883 ORTHO05D005766 5.5e-08 61.2 39 69.2
Hund21302 Selenicereus undatus HOM05D004883 ORTHO05D005766 5.5e-08 61.2 39 69.2
PGSC0003DMG400007973 Solanum tuberosum HOM05D004883 ORTHO05D005766 5.5e-08 61.2 40 70.0
vmacro04449 Vaccinium macrocarpon HOM05D004883 ORTHO05D005766 5.5e-08 61.2 39 69.2
AL8G18060 Arabidopsis lyrata HOM05D004883 ORTHO05D005766 7.1e-08 60.8 39 69.2
BcaB07g31037 Brassica carinata HOM05D004883 ORTHO05D005766 7.1e-08 60.8 39 69.2
BcaC04g21964 Brassica carinata HOM05D004883 ORTHO05D005766 7.1e-08 60.8 39 69.2
BcaC06g31741 Brassica carinata HOM05D004883 ORTHO05D005766 7.1e-08 60.8 39 69.2
A09p20040 Brassica napus HOM05D004883 ORTHO05D005766 7.1e-08 60.8 39 69.2
C09p25420 Brassica napus HOM05D004883 ORTHO05D005766 7.1e-08 60.8 39 69.2
BolC9t55441H Brassica oleracea HOM05D004883 ORTHO05D005766 7.1e-08 60.8 39 69.2
BraA09t37617Z Brassica rapa HOM05D004883 ORTHO05D005766 7.1e-08 60.8 39 69.2
Carub.0008s0602 Capsella rubella HOM05D004883 ORTHO05D005766 7.1e-08 60.8 39 69.2
CARHR181250 Cardamine hirsuta HOM05D004883 ORTHO05D005766 7.1e-08 60.8 39 69.2
AUR62014661 Chenopodium quinoa HOM05D004883 ORTHO05D005766 7.1e-08 60.8 39 69.2
AUR62044174 Chenopodium quinoa HOM05D004883 ORTHO05D005766 7.1e-08 60.8 39 69.2
COL.COLO4_26509 Corchorus olitorius HOM05D004883 ORTHO05D005766 7.1e-08 60.8 39 66.7
Duzib093G0126 Durio zibethinus HOM05D004883 ORTHO05D005766 7.1e-08 60.8 39 66.7
Thhalv10003291m.g Eutrema salsugineum HOM05D004883 ORTHO05D005766 7.1e-08 60.8 39 69.2
Gohir.D01G108200 Gossypium hirsutum HOM05D004883 ORTHO05D005766 7.1e-08 60.8 39 66.7
Gorai.002G132400 Gossypium raimondii HOM05D004883 ORTHO05D005766 7.1e-08 60.8 39 66.7
Manes.05G174000 Manihot esculenta HOM05D004883 ORTHO05D005766 7.1e-08 60.8 37 73.0
Medtr1g019430 Medicago truncatula HOM05D004883 ORTHO05D005766 7.1e-08 60.8 39 69.2
Sp2g07620 Schrenkiella parvula HOM05D004883 ORTHO05D005766 7.1e-08 60.8 39 69.2
FAN20G2534 Fragaria x ananassa HOM05D004883 ORTHO05D005766 9.3e-08 60.5 39 69.2
FAN27G2225 Fragaria x ananassa HOM05D004883 ORTHO05D005766 9.3e-08 60.5 39 69.2
HanXRQChr14g0439621 Helianthus annuus HOM05D004883 ORTHO05D005766 1.2e-07 60.1 37 70.3
Actinidia38058 Actinidia chinensis HOM05D004883 ORTHO05D005766 1.6e-07 59.7 39 66.7
AT5G42890 Arabidopsis thaliana HOM05D004883 ORTHO05D005766 1.6e-07 59.7 39 66.7
EL10Ac8g19960 Beta vulgaris HOM05D004883 ORTHO05D005766 1.6e-07 59.7 39 69.2
Ciclev10002854m.g Citrus clementina HOM05D004883 ORTHO05D005766 1.6e-07 59.7 35 74.3
Gohir.A01G119900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 1.6e-07 59.7 39 64.1
Oeu044836.1 Olea europaea HOM05D004883 ORTHO05D005766 1.6e-07 59.7 40 65.0
Sc02g0007090 Simmondsia chinensis HOM05D004883 ORTHO05D005766 1.6e-07 59.7 39 69.2
TAR625G0321 Trochodendron aralioides HOM05D004883 ORTHO05D005766 1.6e-07 59.7 32 81.2
THA.LOC104822849 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 2.1e-07 59.3 39 66.7
Lsat_1_v5_gn_6_112040 Lactuca sativa HOM05D004883 ORTHO05D005766 2.7e-07 58.9 39 69.2
MSTRG.1348 Avicennia marina HOM05D004883 ORTHO05D005766 3.5e-07 58.5 41 63.4
DCAR_012777 Daucus carota HOM05D004883 ORTHO05D005766 3.5e-07 58.5 39 66.7
Oeu057282.1 Olea europaea HOM05D004883 ORTHO05D005766 3.5e-07 58.5 40 62.5
Lsat_1_v5_gn_4_125820 Lactuca sativa HOM05D004883 ORTHO05D005766 4.6e-07 58.2 39 66.7
THA.LOC104814168 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 4.6e-07 58.2 39 66.7
FvH4_2g34440 Fragaria vesca HOM05D004883 ORTHO05D005766 6.0e-07 57.8 37 70.3
Gohir.A05G202300 Gossypium hirsutum HOM05D004883 ORTHO05D005766 6.0e-07 57.8 39 64.1
Gohir.D05G205400 Gossypium hirsutum HOM05D004883 ORTHO05D005766 6.0e-07 57.8 39 64.1
Gorai.009G211700 Gossypium raimondii HOM05D004883 ORTHO05D005766 6.0e-07 57.8 39 64.1
Nn1g04858 Nelumbo nucifera HOM05D004883 ORTHO05D005766 7.9e-07 57.4 39 69.2
Potri.002G126200 Populus trichocarpa HOM05D004883 ORTHO05D005766 7.9e-07 57.4 37 67.6
BcaC09g50201 Brassica carinata HOM05D004883 ORTHO05D005766 1.0e-06 57.0 35 71.4
Actinidia29871 Actinidia chinensis HOM05D004883 ORTHO05D005766 1.3e-06 56.6 39 64.1
Migut.N02708 Erythranthe guttata HOM05D004883 ORTHO05D005766 1.3e-06 56.6 38 63.2
Potri.014G029300 Populus trichocarpa HOM05D004883 ORTHO05D005766 1.3e-06 56.6 37 64.9
CSS0025959 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 1.8e-06 56.2 39 66.7
CSS0031938 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 1.8e-06 56.2 39 66.7
Peaxi162Scf00010g00308 Petunia axillaris HOM05D004883 ORTHO05D005766 1.8e-06 56.2 40 62.5
Sabra02G0098900 Salix brachista HOM05D004883 ORTHO05D005766 1.8e-06 56.2 37 64.9
Migut.C00579 Erythranthe guttata HOM05D004883 ORTHO05D005766 2.3e-06 55.8 40 60.0
Gohir.D06G016900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 2.3e-06 55.8 35 68.6
Gorai.010G019800 Gossypium raimondii HOM05D004883 ORTHO05D005766 2.3e-06 55.8 35 68.6
Lj4A58G20 Lonicera japonica HOM05D000983 ORTHO05D005766 2.3e-06 55.8 37 64.9
Sabra14G0020100 Salix brachista HOM05D004883 ORTHO05D005766 2.3e-06 55.8 37 64.9
Cc10_g04160 Coffea canephora HOM05D004883 ORTHO05D005766 3.0e-06 55.5 39 64.1
Nitab4.5_0000287g0320 Nicotiana tabacum HOM05D004883 ORTHO05D005766 3.0e-06 55.5 36 69.4
Nitab4.5_0003118g0020 Nicotiana tabacum HOM05D004883 ORTHO05D005766 3.0e-06 55.5 36 69.4
Thecc.08G007300 Theobroma cacao HOM05D004883 ORTHO05D005766 3.0e-06 55.5 39 59.0
SalBow3G1199 Salvia bowleyana HOM05D004883 ORTHO05D005766 3.9e-06 55.1 40 60.0
Gohir.A06G018633 Gossypium hirsutum HOM05D004883 ORTHO05D005766 6.7e-06 54.3 35 65.7
Nn5g30317 Nelumbo nucifera HOM05D004883 ORTHO05D005766 6.7e-06 54.3 39 66.7
Aa31LG9G12950 Aethionema arabicum HOM05D004883 ORTHO05D005766 8.7e-06 53.9 39 66.7
SalBow7G2082 Salvia bowleyana HOM05D004883 ORTHO05D005766 8.7e-06 53.9 40 57.5


User provided reference genes

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