Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C033338.2 Cucumis melo HOM05D000444 ORTHO05D003526 4.3e-29 131.3 107 100.0
MELO3C035106.2 Cucumis melo HOM05D013600 ORTHO05D016905 2.5e-13 79.0 113 77.9
MELO3C033799.2 Cucumis melo HOM05D013600 ORTHO05D170344 1.2e-10 70.1 48 79.2
COL.COLO4_25248 Corchorus olitorius HOM05D003203 ORTHO05D003526 3.8e-09 65.1 33 90.9
ClCG02G020930 Citrullus lanatus HOM05D000444 ORTHO05D003472 4.9e-09 64.7 38 81.6
MELO3C025745.2 Cucumis melo HOM05D000444 ORTHO05D003472 4.9e-09 64.7 38 81.6
CsaV3_6G021620 Cucumis sativus L. HOM05D000444 ORTHO05D003472 4.9e-09 64.7 38 81.6
QL01p037109 Quercus lobata HOM05D000444 ORTHO05D003472 8.4e-09 63.9 33 84.8
Rhsim13G0092400 Rhododendron simsii HOM05D000444 ORTHO05D003472 1.1e-08 63.5 33 84.8
Sed0019511 Sechium edule HOM05D000444 ORTHO05D003472 1.1e-08 63.5 38 78.9
Lj3g0011846 Lotus japonicus HOM05D000444 ORTHO05D003472 1.4e-08 63.2 33 84.8
MD03G1111700 Malus domestica HOM05D000444 ORTHO05D003472 1.4e-08 63.2 33 87.9
TPR.G14915 Trifolium pratense HOM05D000444 ORTHO05D003472 1.4e-08 63.2 33 84.8
Atru.chr3.3694 Acer truncatum HOM05D000444 ORTHO05D003472 1.9e-08 62.8 33 84.8
Cfa011367 Carpinus fangiana HOM05D000444 ORTHO05D003472 1.9e-08 62.8 33 84.8
Ciclev10028136m.g Citrus clementina HOM05D000444 ORTHO05D003472 1.9e-08 62.8 33 84.8
Eucgr.J00955 Eucalyptus grandis HOM05D000444 ORTHO05D003472 1.9e-08 62.8 33 84.8
FvH4_3g33440 Fragaria vesca HOM05D000444 ORTHO05D003472 1.9e-08 62.8 33 87.9
FAN11G1848 Fragaria x ananassa HOM05D000444 ORTHO05D003472 1.9e-08 62.8 33 87.9
FAN16G1180 Fragaria x ananassa HOM05D000444 ORTHO05D003472 1.9e-08 62.8 33 87.9
RhsimUnG0117600 Rhododendron simsii HOM05D000444 ORTHO05D003472 1.9e-08 62.8 33 84.8
VMungo1127G0171 Vigna mungo HOM05D000444 ORTHO05D003472 1.9e-08 62.8 33 84.8
CiPaw.13G106800 Carya illinoinensis HOM05D000444 ORTHO05D003472 2.5e-08 62.4 33 84.8
Phvul.011G072400 Phaseolus vulgaris HOM05D000444 ORTHO05D003472 2.5e-08 62.4 33 81.8
MD11G1126200 Malus domestica HOM05D000444 ORTHO05D003472 4.2e-08 61.6 33 87.9
Glyma.12G071800 Glycine max HOM05D000444 ORTHO05D003472 5.5e-08 61.2 33 81.8
Hma1.2p1_0350F.1_g132770 Hydrangea macrophylla HOM05D000444 ORTHO05D003472 5.5e-08 61.2 33 81.8
Prupe.6G094600 Prunus persica HOM05D000444 ORTHO05D003472 5.5e-08 61.2 33 81.8
vmacro20056 Vaccinium macrocarpon HOM05D000444 ORTHO05D003472 5.5e-08 61.2 33 81.8
Actinidia19710 Actinidia chinensis HOM05D000444 ORTHO05D003472 7.1e-08 60.8 33 81.8
Ah.11g047910 Amaranthus hybridus HOM05D000444 ORTHO05D003472 7.1e-08 60.8 33 81.8
Duzib128G0832 Durio zibethinus HOM05D000444 ORTHO05D003472 7.1e-08 60.8 33 81.8
RcHm_v2.0_Chr5g0060781 Rosa chinensis HOM05D000444 ORTHO05D003472 7.1e-08 60.8 33 81.8
Thecc.05G054600 Theobroma cacao HOM05D000444 ORTHO05D003472 7.1e-08 60.8 33 81.8
TAR636G1471 Trochodendron aralioides HOM05D000444 ORTHO05D003472 7.1e-08 60.8 33 84.8
Atru.chr8.2560_Atru.chr8.2561 Acer truncatum HOM05D000444 ORTHO05D003472 9.3e-08 60.5 33 81.8
FAN05G4326 Fragaria x ananassa HOM05D000444 ORTHO05D003472 9.3e-08 60.5 38 73.7
FAN14G3296 Fragaria x ananassa HOM05D000444 ORTHO05D003472 9.3e-08 60.5 38 73.7
HanXRQChr02g0051311 Helianthus annuus HOM05D000444 ORTHO05D003472 9.3e-08 60.5 33 81.8
Lsat_1_v5_gn_6_26261 Lactuca sativa HOM05D000444 ORTHO05D003472 9.3e-08 60.5 33 78.8
Nitab4.5_0012065g0010 Nicotiana tabacum HOM05D000444 ORTHO05D003472 9.3e-08 60.5 33 78.8
vmacro03172 Vaccinium macrocarpon HOM05D000444 ORTHO05D003472 9.3e-08 60.5 33 78.8
CAN.G1676.4 Capsicum annuum HOM05D000444 ORTHO05D003472 1.2e-07 60.1 33 78.8
Glyma.11G152751 Glycine max HOM05D000444 ORTHO05D003472 1.2e-07 60.1 33 78.8
Gohir.A07G116200 Gossypium hirsutum HOM05D000444 ORTHO05D003472 1.2e-07 60.1 33 84.8
Gohir.D07G120600 Gossypium hirsutum HOM05D000444 ORTHO05D003472 1.2e-07 60.1 33 84.8
Gorai.001G130100 Gossypium raimondii HOM05D000444 ORTHO05D003472 1.2e-07 60.1 33 84.8
Lsat_1_v5_gn_6_29740 Lactuca sativa HOM05D000444 ORTHO05D003472 1.2e-07 60.1 33 81.8
RcHm_v2.0_Chr3g0468891 Rosa chinensis HOM05D000444 ORTHO05D003472 1.2e-07 60.1 33 78.8
TWI75G0756 Tripterygium wilfordii HOM05D000444 ORTHO05D003472 1.2e-07 60.1 33 81.8
TWI75G0881 Tripterygium wilfordii HOM05D000444 ORTHO05D003472 1.2e-07 60.1 33 81.8
ATR1159G097 Amborella trichopoda HOM05D000444 ORTHO05D003472 1.6e-07 59.7 42 69.0
MSTRG.14133 Avicennia marina HOM05D000444 ORTHO05D003472 1.6e-07 59.7 33 81.8
MSTRG.18640 Avicennia marina HOM05D000444 ORTHO05D003472 1.6e-07 59.7 33 81.8
Cpa.g.sc45.37 Carica papaya HOM05D000444 ORTHO05D003472 1.6e-07 59.7 33 81.8
CDE02G1857 Ceratophyllum demersum HOM05D000444 ORTHO05D003472 1.6e-07 59.7 33 75.8
CDE09G1299 Ceratophyllum demersum HOM05D000444 ORTHO05D003472 1.6e-07 59.7 33 75.8
Ca_19240_v3 Cicer arietinum L. HOM05D000444 ORTHO05D003472 1.6e-07 59.7 33 78.8
COL.COLO4_27074 Corchorus olitorius HOM05D000444 ORTHO05D003472 1.6e-07 59.7 33 78.8
Haze_23918 Corylus avellana HOM05D000444 ORTHO05D003472 1.6e-07 59.7 33 81.8
Lj1C184T9 Lonicera japonica HOM05D000444 ORTHO05D003472 1.6e-07 59.7 33 78.8
Lj1g0004752 Lotus japonicus HOM05D000444 ORTHO05D003472 1.6e-07 59.7 33 78.8
Lj5g0021512 Lotus japonicus HOM05D000444 ORTHO05D003472 1.6e-07 59.7 33 78.8
Manes.08G003700 Manihot esculenta HOM05D000444 ORTHO05D003472 1.6e-07 59.7 33 78.8
Medtr4g060900 Medicago truncatula HOM05D000444 ORTHO05D003472 1.6e-07 59.7 33 75.8
Oeu026846.1 Olea europaea HOM05D000444 ORTHO05D003472 1.6e-07 59.7 33 78.8
PGR119G2493 Punica granatum HOM05D000444 ORTHO05D003472 1.6e-07 59.7 33 78.8
SalBow3G3327 Salvia bowleyana HOM05D000444 ORTHO05D003472 1.6e-07 59.7 34 79.4
SalBow3G3582 Salvia bowleyana HOM05D000444 ORTHO05D003472 1.6e-07 59.7 34 79.4
Solyc09g007380.3 Solanum lycopersicum HOM05D000444 ORTHO05D003472 1.6e-07 59.7 33 78.8
HPP92_013892 Vanilla planifolia HOM05D000444 ORTHO05D003472 1.6e-07 59.7 33 78.8
Aqoxy2G01666 Aquilegia oxysepala HOM05D000444 ORTHO05D003472 2.1e-07 59.3 33 78.8
Duzib093G1796 Durio zibethinus HOM05D000444 ORTHO05D003472 2.1e-07 59.3 33 78.8
Phvul.007G164100 Phaseolus vulgaris HOM05D000444 ORTHO05D003472 2.1e-07 59.3 50 62.0
Sed0011047 Sechium edule HOM05D000444 ORTHO05D003472 2.1e-07 59.3 35 77.1
Hund20175 Selenicereus undatus HOM05D000444 ORTHO05D003472 2.1e-07 59.3 33 78.8
Sc20g0005090 Simmondsia chinensis HOM05D000444 ORTHO05D003472 2.1e-07 59.3 33 78.8
VMungo0720G1772 Vigna mungo HOM05D000444 ORTHO05D003472 2.1e-07 59.3 33 75.8
CANSAT54G0195 Cannabis sativa HOM05D000444 ORTHO05D003472 2.7e-07 58.9 33 81.8
Cfa017511 Carpinus fangiana HOM05D000444 ORTHO05D003472 2.7e-07 58.9 33 78.8
Haze_20643 Corylus avellana HOM05D000444 ORTHO05D003472 2.7e-07 58.9 33 78.8
Glyma.10G049800 Glycine max HOM05D000444 ORTHO05D003472 2.7e-07 58.9 50 62.0
Glyma.13G137300 Glycine max HOM05D000444 ORTHO05D003472 2.7e-07 58.9 50 62.0
Lalb_Chr03g0027101 Lupinus albus HOM05D000444 ORTHO05D003472 2.7e-07 58.9 33 78.8
MBI05_g24964_MAGBIO Magnolia biondii HOM05D000444 ORTHO05D003472 2.7e-07 58.9 33 75.8
Nitab4.5_0002129g0090 Nicotiana tabacum HOM05D000444 ORTHO05D003472 2.7e-07 58.9 33 75.8
Psat7g223240 Pisum sativum HOM05D000444 ORTHO05D003472 2.7e-07 58.9 33 78.8
SGA_v2.0_scaffold126G33904 Striga asiatica HOM05D000444 ORTHO05D003472 2.7e-07 58.9 33 78.8
EL10Ac7g17356 Beta vulgaris HOM05D000444 ORTHO05D003472 3.5e-07 58.5 33 75.8
CSS0016655 Camellia sinensis var. sinensis HOM05D000444 ORTHO05D003472 3.5e-07 58.5 33 81.8
CAN.G553.13 Capsicum annuum HOM05D000444 ORTHO05D003472 3.5e-07 58.5 33 72.7
Eucgr.A01174 Eucalyptus grandis HOM05D000444 ORTHO05D003472 3.5e-07 58.5 33 78.8
MD04G1103800 Malus domestica HOM05D000444 ORTHO05D003472 3.5e-07 58.5 33 75.8
QL07p045217 Quercus lobata HOM05D000444 ORTHO05D003472 3.5e-07 58.5 33 78.8
Sopen11g030080 Solanum pennellii HOM05D000444 ORTHO05D003472 3.5e-07 58.5 33 72.7
PGSC0003DMG400027375 Solanum tuberosum HOM05D000444 ORTHO05D003472 3.5e-07 58.5 33 72.7
TAR623G1750 Trochodendron aralioides HOM05D000444 ORTHO05D003472 3.5e-07 58.5 50 64.0
arahy.Tifrunner.gnm1.ann1.5TIT61 Arachis hypogaea HOM05D000444 ORTHO05D003472 4.6e-07 58.2 33 78.8
arahy.Tifrunner.gnm1.ann1.N6D8R0 Arachis hypogaea HOM05D000444 ORTHO05D003472 4.6e-07 58.2 33 78.8
arahy.Tifrunner.gnm1.ann1.VY6APJ Arachis hypogaea HOM05D000444 ORTHO05D003472 4.6e-07 58.2 33 78.8
CANSAT56G2766 Cannabis sativa HOM05D000444 ORTHO05D003472 4.6e-07 58.2 33 75.8
AUR62040044 Chenopodium quinoa HOM05D000444 ORTHO05D003472 4.6e-07 58.2 33 78.8
AUR62043159 Chenopodium quinoa HOM05D000444 ORTHO05D003472 4.6e-07 58.2 33 78.8
MELO3C009319.2 Cucumis melo HOM05D000444 ORTHO05D003472 4.6e-07 58.2 33 78.8
Dinv37258 Davidia involucrata HOM05D000444 ORTHO05D003472 4.6e-07 58.2 33 78.8
ECA233G5527 Erigeron canadensis HOM05D000444 ORTHO05D003472 4.6e-07 58.2 33 78.8
Nitab4.5_0000669g0210 Nicotiana tabacum HOM05D000444 ORTHO05D003472 4.6e-07 58.2 33 75.8
Solyc11g072440.2 Solanum lycopersicum HOM05D000444 ORTHO05D003472 4.6e-07 58.2 33 72.7
Sopen09g002280 Solanum pennellii HOM05D000444 ORTHO05D003472 4.6e-07 58.2 33 75.8
TPR.G36962 Trifolium pratense HOM05D000444 ORTHO05D003472 4.6e-07 58.2 32 78.1
vmacro11432 Vaccinium macrocarpon HOM05D000444 ORTHO05D003472 4.6e-07 58.2 38 71.1
CSS0007878 Camellia sinensis var. sinensis HOM05D000444 ORTHO05D003472 6.0e-07 57.8 33 75.8
CsaV3_3G035600 Cucumis sativus L. HOM05D000444 ORTHO05D003472 6.0e-07 57.8 33 78.8
Lj3A979G61 Lonicera japonica HOM05D000444 ORTHO05D003472 6.0e-07 57.8 33 78.8
Nn2g10679 Nelumbo nucifera HOM05D000444 ORTHO05D003472 6.0e-07 57.8 33 72.7
PSO339G2480 Papaver somniferum HOM05D000444 ORTHO05D003472 6.0e-07 57.8 33 78.8
PSO384G4307 Papaver somniferum HOM05D000444 ORTHO05D003472 6.0e-07 57.8 33 78.8
SalBow3G2143 Salvia bowleyana HOM05D000444 ORTHO05D003472 6.0e-07 57.8 33 78.8
SalBow3G2144 Salvia bowleyana HOM05D000444 ORTHO05D003472 6.0e-07 57.8 33 78.8
TWI77G0578 Tripterygium wilfordii HOM05D000444 ORTHO05D003472 6.0e-07 57.8 33 78.8
ClCG10G020510 Citrullus lanatus HOM05D000444 ORTHO05D003472 7.9e-07 57.4 33 78.8
DCAR_006041 Daucus carota HOM05D000444 ORTHO05D003472 7.9e-07 57.4 33 75.8
DCAR_018835 Daucus carota HOM05D000444 ORTHO05D003472 7.9e-07 57.4 33 75.8
Migut.N02620 Erythranthe guttata HOM05D000444 ORTHO05D003472 7.9e-07 57.4 33 75.8
FvH4_6g15410 Fragaria vesca HOM05D000444 ORTHO05D003472 7.9e-07 57.4 38 71.1
FAN09G1926 Fragaria x ananassa HOM05D000444 ORTHO05D003472 7.9e-07 57.4 38 71.1
Ciclev10011495m.g Citrus clementina HOM05D000444 ORTHO05D003472 1.0e-06 57.0 33 72.7
DCAR_018832 Daucus carota HOM05D000444 ORTHO05D003472 1.0e-06 57.0 33 72.7
Lalb_Chr20g0112981 Lupinus albus HOM05D000444 ORTHO05D003472 1.0e-06 57.0 33 75.8
Manes.04G025100 Manihot esculenta HOM05D000444 ORTHO05D003472 1.0e-06 57.0 33 81.8
Medtr7g100780 Medicago truncatula HOM05D000444 ORTHO05D003472 1.0e-06 57.0 32 75.0
Oeu029540.1 Olea europaea HOM05D000444 ORTHO05D003472 1.0e-06 57.0 50 60.0
Oeu037231.3 Olea europaea HOM05D000444 ORTHO05D003472 1.0e-06 57.0 33 75.8
Peaxi162Scf00005g04417 Petunia axillaris HOM05D000444 ORTHO05D003472 1.0e-06 57.0 33 75.8
Potri.016G086200 Populus trichocarpa HOM05D000444 ORTHO05D003472 1.0e-06 57.0 33 75.8
Prupe.6G240800 Prunus persica HOM05D000444 ORTHO05D003472 1.0e-06 57.0 33 75.8
Sabra16G0092500 Salix brachista HOM05D000444 ORTHO05D003472 1.0e-06 57.0 33 75.8
THA.LOC104823242 Tarenaya hassleriana HOM05D000444 ORTHO05D003472 1.0e-06 57.0 50 62.0
arahy.Tifrunner.gnm1.ann1.BP1YKW Arachis hypogaea HOM05D000444 ORTHO05D003472 1.3e-06 56.6 50 60.0
arahy.Tifrunner.gnm1.ann1.W0MI6J Arachis hypogaea HOM05D000444 ORTHO05D003472 1.3e-06 56.6 50 60.0
DCAR_014964 Daucus carota HOM05D000444 ORTHO05D003472 1.3e-06 56.6 33 75.8
SalBow3G1822 Salvia bowleyana HOM05D000444 ORTHO05D003472 1.3e-06 56.6 33 75.8
PGSC0003DMG400001739 Solanum tuberosum HOM05D000444 ORTHO05D003472 1.3e-06 56.6 33 75.8
CSS0014232 Camellia sinensis var. sinensis HOM05D000444 ORTHO05D003472 1.8e-06 56.2 33 72.7
Ca_08821_v3 Cicer arietinum L. HOM05D000444 ORTHO05D003472 1.8e-06 56.2 32 75.0
Ca_08828_v3 Cicer arietinum L. HOM05D000444 ORTHO05D003472 1.8e-06 56.2 32 75.0
Os03g0288300 Oryza sativa ssp. japonica HOM05D000444 ORTHO05D003472 1.8e-06 56.2 33 75.8
GSVIVG01025633001 Vitis vinifera HOM05D000444 ORTHO05D003472 1.8e-06 56.2 33 75.8
FAN02G4085 Fragaria x ananassa HOM05D000444 ORTHO05D003472 2.3e-06 55.8 38 68.4
Lj2C107T9 Lonicera japonica HOM05D000444 ORTHO05D003472 2.3e-06 55.8 33 72.7
Peaxi162Scf00389g00942 Petunia axillaris HOM05D000444 ORTHO05D003472 2.3e-06 55.8 33 72.7
Psat3g044440 Pisum sativum HOM05D000444 ORTHO05D003472 2.3e-06 55.8 32 75.0
Potri.006G131300 Populus trichocarpa HOM05D000444 ORTHO05D003472 2.3e-06 55.8 33 75.8
Sc06g0010630 Simmondsia chinensis HOM05D000444 ORTHO05D003472 2.3e-06 55.8 33 72.7
THA.LOC104816321 Tarenaya hassleriana HOM05D000444 ORTHO05D003472 2.3e-06 55.8 50 58.0
ECA233G2719 Erigeron canadensis HOM05D000444 ORTHO05D003472 3.0e-06 55.5 33 75.8
Gohir.A09G151500 Gossypium hirsutum HOM05D000444 ORTHO05D003472 3.0e-06 55.5 50 60.0
Gohir.D09G147100 Gossypium hirsutum HOM05D000444 ORTHO05D003472 3.0e-06 55.5 50 60.0
Gorai.006G168300 Gossypium raimondii HOM05D000444 ORTHO05D003472 3.0e-06 55.5 50 60.0
Zm00001eb397100 Zea mays HOM05D000444 ORTHO05D003472 3.0e-06 55.5 33 75.8
HanXRQChr02g0051901 Helianthus annuus HOM05D000444 ORTHO05D003472 5.1e-06 54.7 33 75.8
Nitab4.5_0001802g0110 Nicotiana tabacum HOM05D000444 ORTHO05D003472 5.1e-06 54.7 33 69.7
Zm00001eb013220 Zea mays HOM05D000444 ORTHO05D003472 5.1e-06 54.7 33 75.8
CiPaw.09G179700 Carya illinoinensis HOM05D000444 ORTHO05D003472 6.7e-06 54.3 33 75.8
Cc06_g03580 Coffea canephora HOM05D000444 ORTHO05D003472 6.7e-06 54.3 50 56.0
Migut.J00419 Erythranthe guttata HOM05D000444 ORTHO05D003472 6.7e-06 54.3 35 71.4


User provided reference genes

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