Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C032808.2 Cucumis melo HOM05D003092 ORTHO05D003977 1.0e-285 986.1 530 100.0
CsaV3_4G007370 Cucumis sativus L. HOM05D003092 ORTHO05D003977 5.6e-45 186.4 92 97.8
Sed0019858 Sechium edule HOM05D003092 ORTHO05D003977 4.7e-44 183.3 92 94.6
ClCG07G010930 Citrullus lanatus HOM05D003092 ORTHO05D003977 6.2e-44 183.0 92 94.6
Sed0024474 Sechium edule HOM05D003092 ORTHO05D003977 1.2e-42 178.7 92 92.4
CiPaw.04G073100 Carya illinoinensis HOM05D003092 ORTHO05D003977 3.7e-41 173.7 105 78.1
Potri.016G018500 Populus trichocarpa HOM05D003092 ORTHO05D003977 6.4e-41 172.9 100 83.0
QL04p061990 Quercus lobata HOM05D003092 ORTHO05D003977 1.4e-40 171.8 92 85.9
AL3G36410 Arabidopsis lyrata HOM05D003092 ORTHO05D003977 2.4e-40 171.0 91 87.9
CARHR098090 Cardamine hirsuta HOM05D003092 ORTHO05D003977 2.4e-40 171.0 91 87.9
Cpa.g.sc8.291 Carica papaya HOM05D003092 ORTHO05D003977 3.2e-40 170.6 91 85.7
DCAR_001912 Daucus carota HOM05D003092 ORTHO05D003977 3.2e-40 170.6 140 62.9
RcHm_v2.0_Chr2g0153591 Rosa chinensis HOM05D003092 ORTHO05D003977 3.2e-40 170.6 100 82.0
BcaC05g28095 Brassica carinata HOM05D003092 ORTHO05D003977 5.4e-40 169.9 92 87.0
A05p26630 Brassica napus HOM05D003092 ORTHO05D003977 5.4e-40 169.9 92 87.0
C05p41220 Brassica napus HOM05D003092 ORTHO05D003977 5.4e-40 169.9 92 87.0
BraA05t21538Z Brassica rapa HOM05D003092 ORTHO05D003977 5.4e-40 169.9 92 87.0
Eucgr.K01341 Eucalyptus grandis HOM05D003092 ORTHO05D003977 5.4e-40 169.9 92 84.8
Duzib133G0324 Durio zibethinus HOM05D003092 ORTHO05D003977 7.1e-40 169.5 100 78.0
Thhalv10020563m.g Eutrema salsugineum HOM05D003092 ORTHO05D003977 7.1e-40 169.5 92 85.9
Lalb_Chr01g0001161 Lupinus albus HOM05D003092 ORTHO05D003977 7.1e-40 169.5 102 77.5
Sabra06G0014400 Salix brachista HOM05D003092 ORTHO05D003977 7.1e-40 169.5 91 86.8
BolC5t32860H Brassica oleracea HOM05D003092 ORTHO05D003977 1.2e-39 168.7 92 85.9
CAN.G352.66 Capsicum annuum HOM05D003092 ORTHO05D003977 1.2e-39 168.7 92 82.6
Ciclev10011509m.g Citrus clementina HOM05D003092 ORTHO05D003977 1.2e-39 168.7 100 80.0
Duzib138G1254 Durio zibethinus HOM05D003092 ORTHO05D003977 1.2e-39 168.7 100 78.0
Carub.0003s2237 Capsella rubella HOM05D003092 ORTHO05D003977 1.6e-39 168.3 92 85.9
Gohir.A11G156000 Gossypium hirsutum HOM05D003092 ORTHO05D003977 1.6e-39 168.3 92 84.8
CANSAT64G1584 Cannabis sativa HOM05D003092 ORTHO05D003977 2.7e-39 167.5 92 83.7
Medtr4g076100 Medicago truncatula HOM05D003092 ORTHO05D003977 2.7e-39 167.5 100 80.0
AT3G22200 Arabidopsis thaliana HOM05D003092 ORTHO05D003977 3.5e-39 167.2 91 85.7
Ca_11243_v3 Cicer arietinum L. HOM05D003092 ORTHO05D003977 4.6e-39 166.8 92 82.6
Potri.006G020900 Populus trichocarpa HOM05D003092 ORTHO05D003977 4.6e-39 166.8 91 85.7
Atru.chr8.993 Acer truncatum HOM05D003092 ORTHO05D003977 6.0e-39 166.4 100 78.0
Aa31LG8G8760 Aethionema arabicum HOM05D003092 ORTHO05D003977 6.0e-39 166.4 92 83.7
Gohir.D11G163100 Gossypium hirsutum HOM05D003092 ORTHO05D003977 6.0e-39 166.4 92 83.7
Gorai.007G173800 Gossypium raimondii HOM05D003092 ORTHO05D003977 6.0e-39 166.4 92 83.7
BcaB04g20537 Brassica carinata HOM05D003092 ORTHO05D003977 7.8e-39 166.0 92 84.8
FAN09G3380 Fragaria x ananassa HOM05D003092 ORTHO05D003977 7.8e-39 166.0 98 80.6
Hma1.2p1_0758F.1_g213520 Hydrangea macrophylla HOM05D003092 ORTHO05D003977 7.8e-39 166.0 103 77.7
THA.LOC104803008 Tarenaya hassleriana HOM05D003092 ORTHO05D003977 7.8e-39 166.0 91 82.4
Thecc.01G172800 Theobroma cacao HOM05D003092 ORTHO05D003977 7.8e-39 166.0 92 83.7
TAR629G1366 Trochodendron aralioides HOM05D003092 ORTHO05D003977 7.8e-39 166.0 100 77.0
FAN02G1300 Fragaria x ananassa HOM05D003092 ORTHO05D003977 1.0e-38 165.6 90 87.8
FAN02G3818 Fragaria x ananassa HOM05D003092 ORTHO05D003977 1.0e-38 165.6 98 80.6
FvH4_6g39530 Fragaria vesca HOM05D003092 ORTHO05D003977 1.3e-38 165.2 98 79.6
FAN14G1111 Fragaria x ananassa HOM05D003092 ORTHO05D003977 1.3e-38 165.2 98 79.6
PGR142G2785 Punica granatum HOM05D003092 ORTHO05D003977 1.3e-38 165.2 102 75.5
Glyma.11G096200 Glycine max HOM05D003092 ORTHO05D003977 1.7e-38 164.9 100 76.0
TPR.G35755 Trifolium pratense HOM05D003092 ORTHO05D003977 1.7e-38 164.9 91 84.6
BcaC09g49157 Brassica carinata HOM05D003092 ORTHO05D003977 2.3e-38 164.5 92 83.7
A01p32960 Brassica napus HOM05D003092 ORTHO05D003977 2.3e-38 164.5 92 83.7
BolC1t04162H Brassica oleracea HOM05D003092 ORTHO05D003977 2.3e-38 164.5 92 83.7
Dinv18426 Davidia involucrata HOM05D003092 ORTHO05D003977 2.3e-38 164.5 92 84.8
FAN05G2188 Fragaria x ananassa HOM05D003092 ORTHO05D003977 2.3e-38 164.5 97 80.4
PGSC0003DMG400011754 Solanum tuberosum HOM05D003092 ORTHO05D003977 3.0e-38 164.1 103 72.8
TPR.G21260 Trifolium pratense HOM05D003092 ORTHO05D003977 3.0e-38 164.1 99 76.8
CSS0021585 Camellia sinensis var. sinensis HOM05D003092 ORTHO05D003977 3.9e-38 163.7 99 76.8
CSS0037687 Camellia sinensis var. sinensis HOM05D003092 ORTHO05D003977 3.9e-38 163.7 99 76.8
FAN14G2664 Fragaria x ananassa HOM05D003092 ORTHO05D003977 3.9e-38 163.7 90 86.7
Glyma.12G022300 Glycine max HOM05D003092 ORTHO05D003977 3.9e-38 163.7 100 77.0
MBI18_g11470_MAGBIO Magnolia biondii HOM05D003092 ORTHO05D003977 3.9e-38 163.7 140 62.9
Manes.08G069100 Manihot esculenta HOM05D003092 ORTHO05D003977 3.9e-38 163.7 103 74.8
Phvul.011G024300 Phaseolus vulgaris HOM05D003092 ORTHO05D003977 3.9e-38 163.7 103 76.7
Rhsim04G0084500 Rhododendron simsii HOM05D003092 ORTHO05D003977 3.9e-38 163.7 92 83.7
TWI60G0778 Tripterygium wilfordii HOM05D003092 ORTHO05D003977 3.9e-38 163.7 91 83.5
Lj1C1040T2 Lonicera japonica HOM05D003092 ORTHO05D003977 5.1e-38 163.3 100 76.0
MSTRG.14878 Avicennia marina HOM05D003092 ORTHO05D003977 6.6e-38 162.9 100 76.0
Nitab4.5_0002232g0040 Nicotiana tabacum HOM05D003092 ORTHO05D003977 6.6e-38 162.9 92 79.3
SalBow7G2525 Salvia bowleyana HOM05D003092 ORTHO05D003977 8.6e-38 162.5 92 81.5
Sed0028086 Sechium edule HOM05D003092 ORTHO05D003977 8.6e-38 162.5 100 77.0
PSO675G5899 Papaver somniferum HOM05D003092 ORTHO05D003977 1.1e-37 162.2 92 80.4
Sp3g20000 Schrenkiella parvula HOM05D003092 ORTHO05D003977 1.1e-37 162.2 92 82.6
Sabra16G0020500 Salix brachista HOM05D003092 ORTHO05D003977 1.5e-37 161.8 99 77.8
CANSAT64G2744 Cannabis sativa HOM05D003092 ORTHO05D003977 1.9e-37 161.4 92 78.3
Nn7g38238 Nelumbo nucifera HOM05D003092 ORTHO05D003977 1.9e-37 161.4 92 80.4
Solyc07g043310.3 Solanum lycopersicum HOM05D003092 ORTHO05D003977 2.5e-37 161.0 92 78.3
Sopen07g022870 Solanum pennellii HOM05D003092 ORTHO05D003977 2.5e-37 161.0 92 78.3
GSVIVG01015824001 Vitis vinifera HOM05D003092 ORTHO05D003977 2.5e-37 161.0 96 81.2
Cc05_g00030 Coffea canephora HOM05D003092 ORTHO05D003977 3.3e-37 160.6 92 80.4
MD09G1139200 Malus domestica HOM05D003092 ORTHO05D003977 3.3e-37 160.6 100 75.0
Peaxi162Scf00393g00517 Petunia axillaris HOM05D003092 ORTHO05D003977 3.3e-37 160.6 92 79.3
BcaB06g26322 Brassica carinata HOM05D003092 ORTHO05D003977 4.3e-37 160.2 92 83.7
Migut.M00096 Erythranthe guttata HOM05D003092 ORTHO05D003977 4.3e-37 160.2 103 75.7
Oeu021138.3 Olea europaea HOM05D003092 ORTHO05D003977 5.6e-37 159.8 101 73.3
PSO541G1731 Papaver somniferum HOM05D003092 ORTHO05D003977 5.6e-37 159.8 92 79.3
ECA238G0264 Erigeron canadensis HOM05D003092 ORTHO05D003977 7.3e-37 159.5 92 80.4
SGA_v2.0_scaffold73G24428 Striga asiatica HOM05D003092 ORTHO05D003977 7.3e-37 159.5 92 81.5
Aa31LG9G2310 Aethionema arabicum HOM05D003092 ORTHO05D003977 9.5e-37 159.1 97 77.3
Gohir.A08G051200 Gossypium hirsutum HOM05D003092 ORTHO05D003977 9.5e-37 159.1 91 80.2
Gohir.D08G060900 Gossypium hirsutum HOM05D003092 ORTHO05D003977 9.5e-37 159.1 91 80.2
AUR62017846 Chenopodium quinoa HOM05D003092 ORTHO05D003977 1.6e-36 158.3 92 79.3
Thhalv10020531m.g Eutrema salsugineum HOM05D003092 ORTHO05D003977 1.6e-36 158.3 92 79.3
VMungo1127G0189 Vigna mungo HOM05D003092 ORTHO05D003977 1.6e-36 158.3 92 78.3
MD17G1128700 Malus domestica HOM05D003092 ORTHO05D003977 2.1e-36 157.9 103 73.8
arahy.Tifrunner.gnm1.ann1.K82IJI Arachis hypogaea HOM05D003092 ORTHO05D003977 2.8e-36 157.5 122 66.4
Lj3g0000609 Lotus japonicus HOM05D003092 ORTHO05D003977 3.6e-36 157.1 92 79.3
Sabra16G0025300 Salix brachista HOM05D003092 ORTHO05D003977 3.6e-36 157.1 88 83.0
Hund04375 Selenicereus undatus HOM05D003092 ORTHO05D003977 3.6e-36 157.1 92 79.3
Gorai.004G063100 Gossypium raimondii HOM05D003092 ORTHO05D003977 4.7e-36 156.8 91 79.1
Psat7g179360 Pisum sativum HOM05D003092 ORTHO05D003977 4.7e-36 156.8 92 77.2
Prupe.3G186500 Prunus persica HOM05D003092 ORTHO05D003977 4.7e-36 156.8 100 75.0
ATR0752G155 Amborella trichopoda HOM05D003092 ORTHO05D003977 6.2e-36 156.4 92 77.2
HanXRQChr14g0446441 Helianthus annuus HOM05D003092 ORTHO05D003977 8.1e-36 156.0 91 76.9
EL10Ac6g15348 Beta vulgaris HOM05D003092 ORTHO05D003977 1.4e-35 155.2 100 75.0
Os04g0614600 Oryza sativa ssp. japonica HOM05D003092 ORTHO05D003977 2.4e-35 154.5 92 78.3
CAN.G816.9 Capsicum annuum HOM05D003092 ORTHO05D003977 3.1e-35 154.1 92 76.1
Lsat_1_v5_gn_2_64281 Lactuca sativa HOM05D003092 ORTHO05D003977 6.8e-35 152.9 100 75.0
Nitab4.5_0005023g0050 Nicotiana tabacum HOM05D003092 ORTHO05D003977 8.9e-35 152.5 91 75.8
Peaxi162Scf00047g02451 Petunia axillaris HOM05D003092 ORTHO05D003977 8.9e-35 152.5 92 73.9
CDE06G0430 Ceratophyllum demersum HOM05D003092 ORTHO05D003977 2.6e-34 151.0 90 76.7
Lsat_1_v5_gn_8_37700 Lactuca sativa HOM05D003092 ORTHO05D003977 2.6e-34 151.0 104 67.3
Oeu003100.1 Olea europaea HOM05D003092 ORTHO05D003977 2.6e-34 151.0 89 77.5
Solyc12g006450.2 Solanum lycopersicum HOM05D003092 ORTHO05D003977 3.4e-34 150.6 92 73.9
Sopen12g002390 Solanum pennellii HOM05D003092 ORTHO05D003977 3.4e-34 150.6 92 73.9
PGSC0003DMG400024275 Solanum tuberosum HOM05D003092 ORTHO05D003977 3.4e-34 150.6 92 73.9
MELO3C026404.2 Cucumis melo HOM05D003092 ORTHO05D003977 5.8e-34 149.8 100 71.0
Lalb_Chr19g0139641 Lupinus albus HOM05D003092 ORTHO05D003977 5.8e-34 149.8 91 73.6
CsaV3_4G032320 Cucumis sativus L. HOM05D003092 ORTHO05D003977 7.6e-34 149.4 100 71.0
Os08g0205900 Oryza sativa ssp. japonica HOM05D003092 ORTHO05D003977 7.6e-34 149.4 103 68.0
Solyc12g006470.2 Solanum lycopersicum HOM05D003092 ORTHO05D003977 9.9e-34 149.1 92 72.8
BraA05t21535Z Brassica rapa HOM05D003092 ORTHO05D003977 1.3e-33 148.7 103 68.0
HanXRQChr08g0214751 Helianthus annuus HOM05D003092 ORTHO05D003977 1.3e-33 148.7 104 68.3
A05p26600 Brassica napus HOM05D003092 ORTHO05D003977 2.9e-33 147.5 92 73.9
ECA233G1959 Erigeron canadensis HOM05D003092 ORTHO05D003977 2.9e-33 147.5 98 69.4
HPP92_014204 Vanilla planifolia HOM05D003092 ORTHO05D003977 2.9e-33 147.5 102 67.6
HPP92_026462 Vanilla planifolia HOM05D003092 ORTHO05D003977 2.9e-33 147.5 102 67.6
Zm00001eb171190 Zea mays HOM05D003092 ORTHO05D003977 2.9e-33 147.5 103 66.0
BcaB06g26323 Brassica carinata HOM05D003092 ORTHO05D003977 3.8e-33 147.1 103 68.0
BcaC05g28093 Brassica carinata HOM05D003092 ORTHO05D003977 3.8e-33 147.1 103 67.0
MELO3C016238.2 Cucumis melo HOM05D003092 ORTHO05D003977 3.8e-33 147.1 103 65.0
Sopen12g002410 Solanum pennellii HOM05D003092 ORTHO05D003977 3.8e-33 147.1 92 71.7
Aqoxy1G01441_Aqoxy1G01442 Aquilegia oxysepala HOM05D003092 ORTHO05D003977 4.9e-33 146.7 100 68.0
Nitab4.5_0002570g0060 Nicotiana tabacum HOM05D003092 ORTHO05D003977 4.9e-33 146.7 90 74.4
Zm00001eb281980 Zea mays HOM05D003092 ORTHO05D003977 8.4e-33 146.0 103 65.0
CsaV3_4G007380 Cucumis sativus L. HOM05D003092 ORTHO05D003977 1.1e-32 145.6 103 64.1
Sc03g0006060 Simmondsia chinensis HOM05D003092 ORTHO05D003977 1.9e-32 144.8 91 76.9
Zm00001eb233600 Zea mays HOM05D003092 ORTHO05D003977 1.9e-32 144.8 92 70.7
Lalb_Chr19g0139611 Lupinus albus HOM05D003092 ORTHO05D003977 4.1e-32 143.7 91 71.4
Zm00001eb233590 Zea mays HOM05D003092 ORTHO05D003977 4.1e-32 143.7 92 69.6
Nitab4.5_0000073g0550 Nicotiana tabacum HOM05D003092 ORTHO05D003977 5.4e-32 143.3 92 72.8
DCAR_029734 Daucus carota HOM05D003092 ORTHO05D003977 9.2e-32 142.5 155 52.3
SGA_v2.0_scaffold181G39738 Striga asiatica HOM05D003092 ORTHO05D003977 2.1e-31 141.4 92 71.7
MELO3C032809.2 Cucumis melo HOM05D003092 ORTHO05D003977 2.7e-31 141.0 107 64.5
PGSC0003DMG400024281 Solanum tuberosum HOM05D003092 ORTHO05D003977 1.0e-30 139.0 92 68.5
GSVIVG01015821001 Vitis vinifera HOM05D003092 ORTHO05D003977 1.3e-30 138.7 99 67.7
Lalb_Chr19g0139631 Lupinus albus HOM05D003092 ORTHO05D003977 2.3e-30 137.9 87 71.3
vmacro09169 Vaccinium macrocarpon HOM05D003092 ORTHO05D003977 3.9e-30 137.1 126 56.3
Zm00001eb430840 Zea mays HOM05D003092 ORTHO05D003977 6.6e-30 136.3 89 71.9
CAN.G339.12 Capsicum annuum HOM05D003092 ORTHO05D003977 2.5e-29 134.4 92 68.5
TAR629G1309 Trochodendron aralioides HOM05D003092 ORTHO05D003977 2.5e-29 134.4 83 73.5
Os04g0614500 Oryza sativa ssp. japonica HOM05D003092 ORTHO05D003977 4.3e-29 133.7 103 62.1
PGSC0003DMG400025228 Solanum tuberosum HOM05D003092 ORTHO05D003977 5.6e-29 133.3 92 66.3
C01p42030 Brassica napus HOM05D003092 ORTHO05D003977 1.2e-28 132.1 154 50.0
Solyc08g014610.4 Solanum lycopersicum HOM05D003092 ORTHO05D003977 1.6e-28 131.7 92 65.2
Sopen08g005600 Solanum pennellii HOM05D003092 ORTHO05D003977 1.6e-28 131.7 92 65.2
Lj7C141T9 Lonicera japonica HOM05D003092 ORTHO05D003977 1.1e-27 129.0 69 84.1
Lj7C139T4 Lonicera japonica HOM05D003092 ORTHO05D003977 5.2e-27 126.7 69 84.1
Os02g0112900 Oryza sativa ssp. japonica HOM05D003092 ORTHO05D003977 2.0e-26 124.8 92 62.0
Nitab4.5_0002570g0080 Nicotiana tabacum HOM05D003092 ORTHO05D003977 7.6e-26 122.9 80 67.5
Cfa023523 Carpinus fangiana HOM05D003092 ORTHO05D003977 9.9e-26 122.5 100 66.0
arahy.Tifrunner.gnm1.ann1.IE54UT Arachis hypogaea HOM05D003092 ORTHO05D003977 2.9e-25 120.9 92 68.5
ClCG11G016800 Citrullus lanatus HOM05D003092 ORTHO05D003977 3.8e-25 120.6 78 69.2
Haze_13641 Corylus avellana HOM05D003092 ORTHO05D003977 1.6e-23 115.2 122 54.1
Mapoly0160s0020 Marchantia polymorpha HOM05D003092 ORTHO05D003977 1.3e-22 112.1 92 57.6
QL04p061858 Quercus lobata HOM05D003092 ORTHO05D003977 8.7e-22 109.4 64 79.7
SMO115G0307 Selaginella moellendorffii HOM05D003092 ORTHO05D003977 8.7e-22 109.4 89 55.1
Zm00001eb070860 Zea mays HOM05D003092 ORTHO05D003977 1.9e-21 108.2 70 70.0
FvH4_6g39560 Fragaria vesca HOM05D003092 ORTHO05D003977 4.3e-21 107.1 56 85.7
Nitab4.5_0002015g0020 Nicotiana tabacum HOM05D003092 ORTHO05D003977 1.4e-19 102.1 89 57.3
Pp3c6_25350 Physcomitrium patens HOM05D003092 ORTHO05D003977 1.8e-19 101.7 102 47.1
Pp3c1_32910 Physcomitrium patens HOM05D003092 ORTHO05D003977 2.4e-16 91.3 92 43.5
SEGI_05338 Sequoiadendron giganteum HOM05D003092 ORTHO05D003977 2.1e-15 88.2 60 65.0
CBR_g20310 Chara braunii HOM05D003092 ORTHO05D000301 1.0e-14 85.9 87 44.8
AagrBONN_evm.TU.Sc2ySwM_368.2355 Anthoceros agrestis HOM05D003092 ORTHO05D003977 1.9e-13 81.6 92 43.5
CsaV3_4G007350 Cucumis sativus L. HOM05D003092 ORTHO05D003977 3.3e-13 80.9 53 69.8
Peaxi162Scf00047g02452 Petunia axillaris HOM05D003092 ORTHO05D003977 3.3e-13 80.9 53 69.8
TPR.G16133 Trifolium pratense HOM05D003092 ORTHO05D003977 4.5e-10 70.5 74 55.4
TPR.G29639 Trifolium pratense HOM05D003092 ORTHO05D003977 4.5e-10 70.5 40 80.0
Nitab4.5_0000073g0530 Nicotiana tabacum HOM05D003092 ORTHO05D003977 2.4e-08 64.7 49 63.3
PRCOL_00000335 Prasinoderma coloniale HOM05D003092 ORTHO05D003977 2.7e-07 61.2 89 36.0
C05p41200 Brassica napus HOM05D003092 ORTHO05D027956 1.3e-06 58.9 122 40.2
Zm00001eb193020 Zea mays HOM05D003092 ORTHO05D003977 5.1e-06 57.0 39 56.4


User provided reference genes

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