Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C031805.2 Cucumis melo HOM05D005908 ORTHO05D007235 4.9e-114 414.5 206 100.0
ClCG05G007830 Citrullus lanatus HOM05D005908 ORTHO05D007235 7.8e-27 124.8 64 95.3
CsaV3_3G016830 Cucumis sativus L. HOM05D005908 ORTHO05D007235 2.9e-26 122.9 65 90.8
Sed0015226 Sechium edule HOM05D005908 ORTHO05D007235 1.2e-22 110.9 67 80.6
Manes.06G144000 Manihot esculenta HOM05D005908 ORTHO05D007235 9.2e-20 101.3 72 65.3
Lj1A993G71 Lonicera japonica HOM05D005908 ORTHO05D007235 8.6e-18 94.7 67 67.2
QL09p014976 Quercus lobata HOM05D005908 ORTHO05D007235 1.1e-17 94.4 68 63.2
Cfa008281 Carpinus fangiana HOM05D005908 ORTHO05D007235 1.9e-17 93.6 65 67.7
Prupe.1G077000 Prunus persica HOM05D005908 ORTHO05D007235 1.9e-17 93.6 66 62.1
GSVIVG01010617001 Vitis vinifera HOM05D005908 ORTHO05D007235 4.3e-17 92.4 69 62.3
Dinv35179 Davidia involucrata HOM05D005908 ORTHO05D007235 5.6e-17 92.0 71 59.2
Potri.015G138400 Populus trichocarpa HOM05D005908 ORTHO05D007235 7.3e-17 91.7 67 62.7
TAR375G0795 Trochodendron aralioides HOM05D005908 ORTHO05D007235 9.5e-17 91.3 71 63.4
HanXRQChr07g0206851 Helianthus annuus HOM05D005908 ORTHO05D007235 2.8e-16 89.7 67 61.2
RcHm_v2.0_Chr1g0376741 Rosa chinensis HOM05D005908 ORTHO05D007235 3.6e-16 89.4 66 63.6
Actinidia32893 Actinidia chinensis HOM05D005908 ORTHO05D007235 6.2e-16 88.6 65 61.5
FAN03G0397 Fragaria x ananassa HOM05D005908 ORTHO05D007235 8.0e-16 88.2 66 62.1
FvH4_7g29023 Fragaria vesca HOM05D005908 ORTHO05D007235 1.1e-15 87.8 66 62.1
FAN10G2728 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.1e-15 87.8 66 62.1
FAN10G3232 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.1e-15 87.8 66 62.1
FvH4_7g15530 Fragaria vesca HOM05D005908 ORTHO05D007235 1.8e-15 87.0 64 64.1
FAN06G0652 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.8e-15 87.0 64 64.1
FAN06G2086 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.8e-15 87.0 64 64.1
Sabra15G0149500 Salix brachista HOM05D005908 ORTHO05D007235 1.8e-15 87.0 67 59.7
vmacro06719 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 1.8e-15 87.0 66 62.1
CANSAT21G0323 Cannabis sativa HOM05D005908 ORTHO05D007235 4.0e-15 85.9 63 68.3
MD13G1243600 Malus domestica HOM05D005908 ORTHO05D007235 4.0e-15 85.9 66 57.6
CiPaw.04G067300 Carya illinoinensis HOM05D005908 ORTHO05D007235 5.2e-15 85.5 67 62.7
Ciclev10005584m.g Citrus clementina HOM05D005908 ORTHO05D007235 5.2e-15 85.5 65 58.5
FAN01G2408 Fragaria x ananassa HOM05D005908 ORTHO05D007235 5.2e-15 85.5 66 60.6
CANSAT21G0021 Cannabis sativa HOM05D005908 ORTHO05D007235 6.8e-15 85.1 63 68.3
Hma1.2p1_0270F.1_g108430 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 8.9e-15 84.7 67 53.7
TWI23G0151 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 1.2e-14 84.3 71 53.5
Actinidia34081 Actinidia chinensis HOM05D005908 ORTHO05D007235 1.5e-14 84.0 68 57.4
Hma1.2p1_0270F.1_g108420 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 1.5e-14 84.0 64 56.2
Thecc.03G170900 Theobroma cacao HOM05D005908 ORTHO05D007235 1.5e-14 84.0 65 60.0
Rhsim04G0117700 Rhododendron simsii HOM05D005908 ORTHO05D007235 2.0e-14 83.6 64 59.4
COL.COLO4_14265 Corchorus olitorius HOM05D005908 ORTHO05D007235 4.4e-14 82.4 66 57.6
PSO478G3277 Papaver somniferum HOM05D005908 ORTHO05D007235 9.8e-14 81.3 65 58.5
Atru.chr1.515 Acer truncatum HOM05D005908 ORTHO05D007235 1.7e-13 80.5 64 54.7
ECA238G1518 Erigeron canadensis HOM05D005908 ORTHO05D007235 1.7e-13 80.5 64 51.6
Nn6g34248 Nelumbo nucifera HOM05D005908 ORTHO05D007235 1.7e-13 80.5 64 60.9
Solyc03g026200.4 Solanum lycopersicum HOM05D005908 ORTHO05D007235 2.2e-13 80.1 68 51.5
PSO782G1770 Papaver somniferum HOM05D005908 ORTHO05D007235 2.9e-13 79.7 71 53.5
Sopen03g005070 Solanum pennellii HOM05D005908 ORTHO05D007235 3.7e-13 79.3 68 50.0
vmacro08977 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 4.9e-13 79.0 79 50.6
CAN.G548.2 Capsicum annuum HOM05D005908 ORTHO05D007235 6.4e-13 78.6 64 54.7
TWI39G0968 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 6.4e-13 78.6 67 53.7
Hma1.2p1_0010F.1_g006900 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 8.3e-13 78.2 59 57.6
PGSC0003DMG402014313 Solanum tuberosum HOM05D005908 ORTHO05D007235 1.4e-12 77.4 67 49.3
Aa31LG3G8480 Aethionema arabicum HOM05D005908 ORTHO05D007235 1.9e-12 77.0 59 59.3
Cc10_g10330 Coffea canephora HOM05D005908 ORTHO05D007235 1.9e-12 77.0 60 56.7
THA.LOC104811995 Tarenaya hassleriana HOM05D005908 ORTHO05D007235 3.2e-12 76.3 65 56.9
Gohir.D09G040800 Gossypium hirsutum HOM05D005908 ORTHO05D007235 4.1e-12 75.9 63 55.6
Gorai.006G046700 Gossypium raimondii HOM05D005908 ORTHO05D007235 4.1e-12 75.9 67 52.2
Peaxi162Scf00915g00250 Petunia axillaris HOM05D005908 ORTHO05D007235 4.1e-12 75.9 64 54.7
BcaB01g04184 Brassica carinata HOM05D005908 ORTHO05D007235 5.4e-12 75.5 59 59.3
A03p15840 Brassica napus HOM05D005908 ORTHO05D007235 5.4e-12 75.5 59 61.0
BraA03t10874Z Brassica rapa HOM05D005908 ORTHO05D007235 5.4e-12 75.5 59 61.0
Aqoxy7G00441 Aquilegia oxysepala HOM05D005908 ORTHO05D007235 9.2e-12 74.7 66 53.0
BcaC01g06164 Brassica carinata HOM05D005908 ORTHO05D007235 9.2e-12 74.7 59 59.3
C03p18500 Brassica napus HOM05D005908 ORTHO05D007235 9.2e-12 74.7 59 59.3
BolC3t14247H Brassica oleracea HOM05D005908 ORTHO05D007235 9.2e-12 74.7 59 59.3
Nitab4.5_0005024g0020 Nicotiana tabacum HOM05D005908 ORTHO05D007235 9.2e-12 74.7 64 54.7
MSTRG.8762 Avicennia marina HOM05D005908 ORTHO05D007235 1.2e-11 74.3 64 53.1
CARHR265040 Cardamine hirsuta HOM05D005908 ORTHO05D007235 1.6e-11 73.9 59 57.6
Carub.0008s1219 Capsella rubella HOM05D005908 ORTHO05D007235 2.0e-11 73.6 59 57.6
Migut.F00374 Erythranthe guttata HOM05D005908 ORTHO05D007235 2.0e-11 73.6 69 56.5
Glyma.16G198400 Glycine max HOM05D005908 ORTHO05D007235 2.0e-11 73.6 69 47.8
Nitab4.5_0001083g0110 Nicotiana tabacum HOM05D005908 ORTHO05D007235 2.0e-11 73.6 64 54.7
Eucgr.K00226 Eucalyptus grandis HOM05D005908 ORTHO05D007235 4.6e-11 72.4 64 51.6
Lsat_1_v5_gn_2_133120 Lactuca sativa HOM05D005908 ORTHO05D007235 4.6e-11 72.4 63 55.6
SalBow1G0690 Salvia bowleyana HOM05D005908 ORTHO05D007235 7.8e-11 71.6 69 46.4
AL8G26480 Arabidopsis lyrata HOM05D005908 ORTHO05D007235 1.0e-10 71.2 59 54.2
Thhalv10014339m.g Eutrema salsugineum HOM05D005908 ORTHO05D007235 1.0e-10 71.2 59 54.2
Lalb_Chr01g0009141 Lupinus albus HOM05D005908 ORTHO05D007235 1.0e-10 71.2 64 53.1
MBI12_g29759_MAGBIO Magnolia biondii HOM05D005908 ORTHO05D007235 1.3e-10 70.9 64 53.1
FAN03G2347 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.7e-10 70.5 62 58.1
Psat1g113160 Pisum sativum HOM05D005908 ORTHO05D007235 1.7e-10 70.5 64 53.1
Sp6g14360 Schrenkiella parvula HOM05D005908 ORTHO05D007235 2.3e-10 70.1 59 54.2
SpUn0060_0050 Schrenkiella parvula HOM05D005908 ORTHO05D007235 2.3e-10 70.1 59 54.2
FAN03G3234 Fragaria x ananassa HOM05D005908 ORTHO05D007235 3.0e-10 69.7 58 58.6
Lj2g0024281 Lotus japonicus HOM05D005908 ORTHO05D007235 3.9e-10 69.3 64 53.1
TPR.G5821 Trifolium pratense HOM05D005908 ORTHO05D007235 3.9e-10 69.3 64 51.6
AT5G52110 Arabidopsis thaliana HOM05D005908 ORTHO05D007235 5.0e-10 68.9 57 57.9
Lj2g0007665 Lotus japonicus HOM05D005908 ORTHO05D007235 5.0e-10 68.9 64 53.1
Lj4g0016789 Lotus japonicus HOM05D005908 ORTHO05D007235 5.0e-10 68.9 64 53.1
Sc25g0000390 Simmondsia chinensis HOM05D005908 ORTHO05D007235 5.0e-10 68.9 62 51.6
Cpa.g.sc107.9 Carica papaya HOM05D005908 ORTHO05D007235 6.6e-10 68.6 66 56.1
DCAR_009351 Daucus carota HOM05D005908 ORTHO05D007235 1.5e-09 67.4 65 49.2
Oeu030124.1 Olea europaea HOM05D005908 ORTHO05D007235 1.5e-09 67.4 67 50.7
Hund04705 Selenicereus undatus HOM05D005908 ORTHO05D007235 1.9e-09 67.0 59 52.5
VMungo0464G0636 Vigna mungo HOM05D005908 ORTHO05D007235 1.9e-09 67.0 77 41.6
arahy.Tifrunner.gnm1.ann1.580JC2 Arachis hypogaea HOM05D005908 ORTHO05D007235 3.3e-09 66.2 72 48.6
ATR0757G107 Amborella trichopoda HOM05D005908 ORTHO05D007235 5.6e-09 65.5 68 54.4
SGA_v2.0_scaffold2G01076 Striga asiatica HOM05D005908 ORTHO05D007235 9.5e-09 64.7 64 50.0
arahy.Tifrunner.gnm1.ann1.K8NCYF Arachis hypogaea HOM05D005908 ORTHO05D007235 2.1e-08 63.5 64 53.1
CDE11G0458 Ceratophyllum demersum HOM05D003547 ORTHO05D004236 4.7e-08 62.4 59 47.5
Zm00001eb021390 Zea mays HOM05D005908 ORTHO05D007235 8.9e-07 58.2 65 46.2
SEGI_20513 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 3.4e-06 56.2 56 50.0
Ah.13g068320 Amaranthus hybridus HOM05D005908 ORTHO05D007235 5.8e-06 55.5 61 44.3
HPP92_001354 Vanilla planifolia HOM05D005908 ORTHO05D007235 7.5e-06 55.1 70 42.9
HPP92_001363 Vanilla planifolia HOM05D005908 ORTHO05D007235 7.5e-06 55.1 60 46.7
EL10Ac3g05695 Beta vulgaris HOM05D005908 ORTHO05D007235 9.9e-06 54.7 65 41.5


User provided reference genes

Program Settings