Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C030712.2 Cucumis melo HOM05D003612 ORTHO05D004323 3.5e-88 328.2 158 100.0
ClCG04G006280 Citrullus lanatus HOM05D003612 ORTHO05D004323 7.0e-60 234.2 134 84.3
ClCG10G015700 Citrullus lanatus HOM05D003612 ORTHO05D004323 1.2e-59 233.4 134 85.1
MELO3C025231.2 Cucumis melo HOM05D003612 ORTHO05D004323 8.5e-58 227.3 131 81.7
CsaV3_4G027280 Cucumis sativus L. HOM05D003612 ORTHO05D004323 5.5e-57 224.6 131 82.4
Sed0024079 Sechium edule HOM05D003612 ORTHO05D004323 8.2e-53 210.7 134 78.4
Dinv02797 Davidia involucrata HOM05D003612 ORTHO05D004323 6.1e-40 167.9 146 58.9
Lj2A386T88 Lonicera japonica HOM05D003612 ORTHO05D004323 1.8e-36 156.4 146 53.4
Eucgr.B02734 Eucalyptus grandis HOM05D003612 ORTHO05D004323 2.4e-36 156.0 130 58.5
Eucgr.A02322 Eucalyptus grandis HOM05D003612 ORTHO05D004323 2.0e-35 152.9 130 56.9
Dinv39651 Davidia involucrata HOM05D003612 ORTHO05D004323 2.7e-35 152.5 130 56.2
PGR004G2683 Punica granatum HOM05D003612 ORTHO05D004323 4.5e-35 151.8 131 55.7
GSVIVG01033242001 Vitis vinifera HOM05D003612 ORTHO05D004323 4.5e-35 151.8 130 56.2
Ciclev10005938m.g Citrus clementina HOM05D003612 ORTHO05D004323 5.9e-35 151.4 132 55.3
Oeu008170.1 Olea europaea HOM05D003612 ORTHO05D004323 2.9e-34 149.1 129 56.6
Hund23474 Selenicereus undatus HOM05D003612 ORTHO05D004323 2.9e-34 149.1 133 57.1
Actinidia17229 Actinidia chinensis HOM05D003612 ORTHO05D004323 1.1e-33 147.1 119 57.1
CSS0036075 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 1.1e-33 147.1 133 57.1
MBI16_g21161_MAGBIO Magnolia biondii HOM05D003612 ORTHO05D004323 1.1e-33 147.1 130 54.6
Cpa.g.sc182.7 Carica papaya HOM05D003612 ORTHO05D004323 1.5e-33 146.7 133 54.1
Actinidia22794 Actinidia chinensis HOM05D003612 ORTHO05D004323 2.5e-33 146.0 130 53.1
Glyma.07G129400 Glycine max HOM05D003612 ORTHO05D004323 4.3e-33 145.2 140 52.9
arahy.Tifrunner.gnm1.ann1.GM1CB9 Arachis hypogaea HOM05D003612 ORTHO05D004323 5.6e-33 144.8 133 55.6
QL11p026785 Quercus lobata HOM05D003612 ORTHO05D004323 7.3e-33 144.4 132 56.8
VMungo1309G0648 Vigna mungo HOM05D003612 ORTHO05D004323 1.2e-32 143.7 132 53.8
arahy.Tifrunner.gnm1.ann1.65NHSX Arachis hypogaea HOM05D003612 ORTHO05D004323 1.6e-32 143.3 133 54.9
Nitab4.5_0000082g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.6e-32 143.3 131 51.9
Oeu023123.1 Olea europaea HOM05D003612 ORTHO05D004323 1.6e-32 143.3 131 55.0
SalBow1G2865 Salvia bowleyana HOM05D003612 ORTHO05D004323 1.6e-32 143.3 129 56.6
VMungo1383G3573 Vigna mungo HOM05D003612 ORTHO05D004323 1.6e-32 143.3 132 53.0
Gorai.002G227800 Gossypium raimondii HOM05D003612 ORTHO05D004323 2.8e-32 142.5 130 53.1
Hund15698 Selenicereus undatus HOM05D003612 ORTHO05D004323 2.8e-32 142.5 128 55.5
Ca_08432_v3 Cicer arietinum L. HOM05D003612 ORTHO05D004323 3.6e-32 142.1 128 53.1
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 3.6e-32 142.1 132 53.0
TPR.G6202 Trifolium pratense HOM05D003612 ORTHO05D004323 4.7e-32 141.7 143 50.3
Nitab4.5_0004416g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 6.1e-32 141.4 131 52.7
GSVIVG01033245001 Vitis vinifera HOM05D003612 ORTHO05D004323 6.1e-32 141.4 133 53.4
CAN.G641.26 Capsicum annuum HOM05D003612 ORTHO05D004323 8.0e-32 141.0 131 52.7
QL07p002913 Quercus lobata HOM05D003612 ORTHO05D004323 8.0e-32 141.0 132 56.8
PGSC0003DMG400008168 Solanum tuberosum HOM05D003612 ORTHO05D004323 8.0e-32 141.0 131 51.9
Lj1g0003709 Lotus japonicus HOM05D003612 ORTHO05D004323 1.4e-31 140.2 130 52.3
Psat7g055720 Pisum sativum HOM05D003612 ORTHO05D004323 1.4e-31 140.2 133 51.9
Gohir.A01G194000 Gossypium hirsutum HOM05D003612 ORTHO05D004323 1.8e-31 139.8 130 53.1
Nitab4.5_0000082g0220 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.8e-31 139.8 131 52.7
Rhsim04G0105800 Rhododendron simsii HOM05D003612 ORTHO05D004323 1.8e-31 139.8 130 54.6
Sabra17G0119100 Salix brachista HOM05D003612 ORTHO05D004323 2.3e-31 139.4 131 52.7
Solyc10g079310.2 Solanum lycopersicum HOM05D003612 ORTHO05D004323 2.3e-31 139.4 131 53.4
Peaxi162Scf00059g01812 Petunia axillaris HOM05D003612 ORTHO05D004323 3.0e-31 139.0 133 51.9
Psat3g074360 Pisum sativum HOM05D003612 ORTHO05D004323 3.0e-31 139.0 130 51.5
Sopen10g029960 Solanum pennellii HOM05D003612 ORTHO05D004323 3.0e-31 139.0 131 53.4
Cc06_g17860 Coffea canephora HOM05D003612 ORTHO05D004323 4.0e-31 138.7 130 53.8
TPR.G18234 Trifolium pratense HOM05D003612 ORTHO05D004323 4.0e-31 138.7 128 52.3
Nn8g39441 Nelumbo nucifera HOM05D003612 ORTHO05D004323 5.2e-31 138.3 118 55.9
Phvul.008G158112 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 6.8e-31 137.9 131 51.1
CiPaw.09G039700 Carya illinoinensis HOM05D003612 ORTHO05D004323 8.9e-31 137.5 125 55.2
Migut.K00098 Erythranthe guttata HOM05D003612 ORTHO05D004323 8.9e-31 137.5 131 51.9
Nitab4.5_0000912g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 8.9e-31 137.5 131 51.9
vmacro09060 Vaccinium macrocarpon HOM05D003612 ORTHO05D004323 8.9e-31 137.5 130 53.8
Nn1g01643 Nelumbo nucifera HOM05D003612 ORTHO05D004323 1.2e-30 137.1 121 55.4
Medtr8g090105 Medicago truncatula HOM05D003612 ORTHO05D004323 2.6e-30 136.0 134 50.0
Cc04_g15140 Coffea canephora HOM05D003612 ORTHO05D004323 3.4e-30 135.6 130 50.8
Manes.04G104200 Manihot esculenta HOM05D003612 ORTHO05D004323 3.4e-30 135.6 133 50.4
Nitab4.5_0010316g0020 Nicotiana tabacum HOM05D003612 ORTHO05D004323 3.4e-30 135.6 131 50.4
Potri.017G142200 Populus trichocarpa HOM05D003612 ORTHO05D004323 3.4e-30 135.6 123 51.2
TAR369G0285 Trochodendron aralioides HOM05D003612 ORTHO05D004323 4.4e-30 135.2 131 51.9
Lj1C1128T4 Lonicera japonica HOM05D003612 ORTHO05D004323 5.7e-30 134.8 97 62.9
TWI74G0690 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 4.9e-29 131.7 123 51.2
Cfa016791 Carpinus fangiana HOM05D003612 ORTHO05D004323 1.1e-28 130.6 124 56.5
TWI53G1732 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 1.8e-28 129.8 137 51.8
Haze_19817 Corylus avellana HOM05D003612 ORTHO05D004323 2.4e-28 129.4 110 59.1
Haze_19820 Corylus avellana HOM05D003612 ORTHO05D004323 2.4e-28 129.4 110 59.1
SGA_v2.0_scaffold94G28492 Striga asiatica HOM05D003612 ORTHO05D004323 3.2e-28 129.0 140 45.7
MSTRG.26129 Avicennia marina HOM05D003612 ORTHO05D004323 9.2e-28 127.5 130 49.2
ATR0829G008 Amborella trichopoda HOM05D003612 ORTHO05D004323 3.5e-27 125.6 128 50.8
Aqoxy7G03834 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 3.5e-27 125.6 123 48.0
SHI13547 Sapria himalayana HOM05D003612 ORTHO05D004323 5.9e-27 124.8 122 52.5
CANSAT80G2682 Cannabis sativa HOM05D003612 ORTHO05D004323 1.0e-26 124.0 130 45.4
DCAR_030722 Daucus carota HOM05D003612 ORTHO05D004323 1.3e-26 123.6 130 49.2
MD12G1080400 Malus domestica HOM05D003612 ORTHO05D004323 6.6e-26 121.3 146 45.9
Lj6g0010730 Lotus japonicus HOM05D003612 ORTHO05D004323 8.6e-26 120.9 105 52.4
Aqoxy7G03372 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 1.1e-25 120.6 122 44.3
Carub.0005s2421 Capsella rubella HOM05D003612 ORTHO05D004323 1.1e-25 120.6 132 46.2
Lsat_1_v5_gn_7_11501 Lactuca sativa HOM05D000048 ORTHO05D000436 1.1e-25 120.6 101 55.4
Nn2g10440 Nelumbo nucifera HOM05D003612 ORTHO05D004323 1.1e-25 120.6 120 51.7
HPP92_020032 Vanilla planifolia HOM05D003612 ORTHO05D004323 1.5e-25 120.2 103 53.4
Prupe.7G055000 Prunus persica HOM05D003612 ORTHO05D004323 1.9e-25 119.8 146 45.9
AL3G11670 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 2.5e-25 119.4 119 50.4
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 2.5e-25 119.4 125 50.4
AT3G57360 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 4.3e-25 118.6 132 46.2
FvH4_6g24380 Fragaria vesca HOM05D003612 ORTHO05D004323 4.3e-25 118.6 125 50.4
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 4.3e-25 118.6 125 50.4
Aa31LG10G12210 Aethionema arabicum HOM05D000708 ORTHO05D004323 5.6e-25 118.2 131 45.8
Zm00001eb102310 Zea mays HOM05D003612 ORTHO05D004323 1.2e-24 117.1 130 43.1
PSO648G0079 Papaver somniferum HOM05D003612 ORTHO05D004323 1.6e-24 116.7 118 50.0
RcHm_v2.0_Chr3g0483371 Rosa chinensis HOM05D003612 ORTHO05D004323 2.1e-24 116.3 129 47.3
BraA04t16040Z Brassica rapa HOM05D003612 ORTHO05D004323 3.6e-24 115.5 105 51.4
FAN02G1760 Fragaria x ananassa HOM05D003612 ORTHO05D004323 3.6e-24 115.5 125 49.6
Sp5g05240 Schrenkiella parvula HOM05D003612 ORTHO05D004323 3.6e-24 115.5 133 46.6
unitig_52.g17667 Utricularia gibba HOM05D003612 ORTHO05D004323 3.6e-24 115.5 131 43.5
Carub.0001s3481 Capsella rubella HOM05D003612 ORTHO05D004323 6.2e-24 114.8 106 51.9
AUR62005836 Chenopodium quinoa HOM05D000760 ORTHO05D004323 6.2e-24 114.8 144 45.1
AL5G38900 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 8.0e-24 114.4 131 45.0
AUR62029731 Chenopodium quinoa HOM05D003612 ORTHO05D004323 8.0e-24 114.4 127 47.2
AUR62032829 Chenopodium quinoa HOM05D003612 ORTHO05D004323 8.0e-24 114.4 127 48.0
Lalb_Chr20g0110641 Lupinus albus HOM05D003612 ORTHO05D004323 8.0e-24 114.4 146 41.8
COL.COLO4_19254 Corchorus olitorius HOM05D003612 ORTHO05D004323 1.0e-23 114.0 130 45.4
Ah.03g134750 Amaranthus hybridus HOM05D003612 ORTHO05D004323 2.3e-23 112.8 127 46.5
BcaC02g09930 Brassica carinata HOM05D003612 ORTHO05D004323 2.3e-23 112.8 105 50.5
C04p35070 Brassica napus HOM05D003612 ORTHO05D004323 2.3e-23 112.8 105 50.5
BolC4t25063H Brassica oleracea HOM05D003612 ORTHO05D004323 2.3e-23 112.8 105 50.5
Aa31LG1G13790 Aethionema arabicum HOM05D003612 ORTHO05D004323 3.1e-23 112.5 118 46.6
CARHR167560 Cardamine hirsuta HOM05D003612 ORTHO05D004323 4.0e-23 112.1 132 43.9
THA.LOC104802043 Tarenaya hassleriana HOM05D003612 ORTHO05D004323 5.2e-23 111.7 134 44.0
COL.COLO4_22302 Corchorus olitorius HOM05D003612 ORTHO05D004323 6.8e-23 111.3 130 46.2
ECA236G0894 Erigeron canadensis HOM05D003612 ORTHO05D004323 1.2e-22 110.5 105 50.5
A04p03190 Brassica napus HOM05D003612 ORTHO05D004323 1.5e-22 110.2 113 47.8
Thhalv10006455m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 1.5e-22 110.2 133 41.4
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 1.5e-22 110.2 128 45.3
PSO210G3983 Papaver somniferum HOM05D003612 ORTHO05D004323 1.5e-22 110.2 133 44.4
Thecc.05G151100 Theobroma cacao HOM05D003612 ORTHO05D004323 2.6e-22 109.4 87 57.5
EL10Ac6g13255 Beta vulgaris HOM05D003612 ORTHO05D004323 3.4e-22 109.0 127 44.9
HanXRQChr04g0113101 Helianthus annuus HOM05D003612 ORTHO05D004323 3.4e-22 109.0 97 51.5
C08p32750 Brassica napus HOM05D003612 ORTHO05D004323 4.4e-22 108.6 107 48.6
BolC8t50886H Brassica oleracea HOM05D003612 ORTHO05D004323 4.4e-22 108.6 107 48.6
Phvul.007G088100 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 4.4e-22 108.6 92 55.4
PSO210G2319 Papaver somniferum HOM05D003612 ORTHO05D004323 9.8e-22 107.5 118 46.6
Eucgr.A02319 Eucalyptus grandis HOM05D003612 ORTHO05D004323 1.3e-21 107.1 101 54.5
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.3e-21 107.1 128 44.5
A09p50260 Brassica napus HOM05D003612 ORTHO05D004323 3.7e-21 105.5 107 45.8
BraA09t40476Z Brassica rapa HOM05D003612 ORTHO05D004323 3.7e-21 105.5 107 45.8
Sopen03g026320 Solanum pennellii HOM05D003612 ORTHO05D004323 3.7e-21 105.5 86 60.5
CSS0050265 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 8.3e-21 104.4 77 63.6
PSO339G0740 Papaver somniferum HOM05D003612 ORTHO05D004323 2.4e-20 102.8 104 50.0
Os09g0504800 Oryza sativa ssp. japonica HOM05D003612 ORTHO05D004323 3.2e-20 102.4 105 42.9
PSO339G0745 Papaver somniferum HOM05D003612 ORTHO05D004323 7.0e-20 101.3 104 50.0
Thhalv10009639m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 9.2e-20 100.9 132 40.9
AT3G02370 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 2.0e-19 99.8 88 53.4
CsaV3_3G040730 Cucumis sativus L. HOM05D003612 ORTHO05D004323 3.5e-19 99.0 54 87.0
BcaB02g08320 Brassica carinata HOM05D003612 ORTHO05D004323 4.6e-19 98.6 98 44.9
Ah.02g117470 Amaranthus hybridus HOM05D003612 ORTHO05D004323 3.0e-18 95.9 156 39.1
Thhalv10008553m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 5.0e-18 95.1 89 49.4
Thhalv10009908m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 6.6e-18 94.7 145 36.6
Sopen03g026330 Solanum pennellii HOM05D003612 ORTHO05D004323 6.6e-18 94.7 102 47.1
Duzib093G1009 Durio zibethinus HOM05D003612 ORTHO05D004323 2.5e-17 92.8 76 56.6
BcaC07g40390 Brassica carinata HOM05D003612 ORTHO05D004323 3.3e-17 92.4 89 50.6
CDE09G0671 Ceratophyllum demersum HOM05D003612 ORTHO05D004323 4.3e-17 92.0 136 39.0
SGA_v2.0_scaffold1G00588 Striga asiatica HOM05D003612 ORTHO05D004323 1.2e-16 90.5 99 43.4
Dinv02795 Davidia involucrata HOM05D003612 ORTHO05D004323 8.9e-15 84.3 67 61.2
Nitab4.5_0001598g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 2.0e-14 83.2 87 50.6
Prupe.5G048800 Prunus persica HOM05D003612 ORTHO05D004323 2.6e-14 82.8 90 44.4
SMO364G0364 Selaginella moellendorffii HOM05D003612 ORTHO05D004323 3.4e-14 82.4 101 36.6
PGSC0003DMG400013536 Solanum tuberosum HOM05D003612 ORTHO05D004323 4.4e-14 82.0 77 51.9
RcHm_v2.0_Chr1g0361791 Rosa chinensis HOM05D003612 ORTHO05D004323 9.8e-14 80.9 89 46.1
BolC8t50888H Brassica oleracea HOM05D003612 ORTHO05D004323 6.4e-13 78.2 105 38.1
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 8.3e-13 77.8 118 37.3
Pp3c3_37380 Physcomitrium patens HOM05D003612 ORTHO05D004323 1.1e-12 77.4 129 32.6
Glyma.19G136600 Glycine max HOM05D003612 ORTHO05D004323 3.2e-12 75.9 83 49.4
Sc04g0007910 Simmondsia chinensis HOM05D003612 ORTHO05D004323 1.2e-11 73.9 56 62.5
AagrBONN_evm.TU.Sc2ySwM_368.1563 Anthoceros agrestis HOM05D003612 ORTHO05D004323 2.7e-11 72.8 101 32.7
Mapoly0007s0121 Marchantia polymorpha HOM05D003612 ORTHO05D004323 2.7e-11 72.8 107 30.8
PSO339G6630 Papaver somniferum HOM05D003612 ORTHO05D004323 2.7e-11 72.8 88 46.6
MD14G1076600 Malus domestica HOM05D003612 ORTHO05D004323 1.0e-10 70.9 63 54.0
Duzib128G0868 Durio zibethinus HOM05D003612 ORTHO05D004323 3.9e-10 68.9 56 57.1
SEGI_36865 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 6.6e-10 68.2 74 43.2
Glyma.03G134401 Glycine max HOM05D003612 ORTHO05D004323 8.6e-10 67.8 53 54.7
TAR369G0664 Trochodendron aralioides HOM05D003612 ORTHO05D004323 1.1e-09 67.4 56 53.6
PGSC0003DMG400011936 Solanum tuberosum HOM05D003612 ORTHO05D004323 7.3e-09 64.7 131 32.8
Lj1A1127T48 Lonicera japonica HOM05D003612 ORTHO05D004323 1.2e-08 63.9 41 65.9
Gohir.D01G184300 Gossypium hirsutum HOM05D003612 ORTHO05D004323 2.8e-08 62.8 53 49.1
Peaxi162Scf00244g00019 Petunia axillaris HOM05D003612 ORTHO05D004323 2.8e-08 62.8 53 54.7
CBR_g2822 Chara braunii HOM05D000019 ORTHO05D000048 2.6e-06 56.2 130 27.7
C08p32770 Brassica napus HOM05D003612 ORTHO05D004323 7.6e-06 54.7 81 40.7


User provided reference genes

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