Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C030607.2 Cucumis melo HOM05D002690 ORTHO05D171331 1.0e-73 280.0 145 100.0
EL10Ac8g19577 Beta vulgaris HOM05D002690 ORTHO05D005709 5.7e-08 61.6 65 58.5
TAR627G0656 Trochodendron aralioides HOM05D002690 ORTHO05D005709 5.7e-08 61.6 69 59.4
Os06g0677700 Oryza sativa ssp. japonica HOM05D002690 ORTHO05D005709 7.4e-08 61.2 61 59.0
THA.LOC104798605 Tarenaya hassleriana HOM05D002690 ORTHO05D005709 1.3e-07 60.5 59 59.3
MELO3C022129.2 Cucumis melo HOM05D002690 ORTHO05D005709 3.7e-07 58.9 72 56.9
MSTRG.16286 Avicennia marina HOM05D002690 ORTHO05D005709 4.8e-07 58.5 53 62.3
MELO3C002805.2 Cucumis melo HOM05D002690 ORTHO05D005709 4.8e-07 58.5 42 76.2
Ciclev10014454m.g Citrus clementina HOM05D002690 ORTHO05D005709 6.3e-07 58.2 74 52.7
Zm00001eb273850 Zea mays HOM05D002690 ORTHO05D005709 6.3e-07 58.2 62 58.1
CDE12G0823 Ceratophyllum demersum HOM05D002690 ORTHO05D005709 8.2e-07 57.8 76 55.3
Sed0021012 Sechium edule HOM05D002690 ORTHO05D005709 8.2e-07 57.8 42 76.2
Sed0027591 Sechium edule HOM05D002690 ORTHO05D005709 8.2e-07 57.8 42 76.2
unitig_0.g927 Utricularia gibba HOM05D002690 ORTHO05D005709 8.2e-07 57.8 70 54.3
Zm00001eb224690 Zea mays HOM05D002690 ORTHO05D005709 8.2e-07 57.8 61 59.0
AUR62042032 Chenopodium quinoa HOM05D002690 ORTHO05D005709 1.1e-06 57.4 59 59.3
ClCG08G001630 Citrullus lanatus HOM05D002690 ORTHO05D005709 1.1e-06 57.4 64 54.7
Duzib132G0834 Durio zibethinus HOM05D002690 ORTHO05D005709 1.1e-06 57.4 60 56.7
Migut.H01337 Erythranthe guttata HOM05D002690 ORTHO05D005709 1.1e-06 57.4 63 55.6
Potri.011G089901 Populus trichocarpa HOM05D002690 ORTHO05D005709 1.1e-06 57.4 42 73.8
Prupe.4G089500 Prunus persica HOM05D002690 ORTHO05D005709 1.1e-06 57.4 59 57.6
ClCG03G006290 Citrullus lanatus HOM05D002690 ORTHO05D005709 1.4e-06 57.0 70 52.9
CsaV3_5G039520 Cucumis sativus L. HOM05D002690 ORTHO05D005709 1.4e-06 57.0 72 55.6
Dinv15926 Davidia involucrata HOM05D002690 ORTHO05D005709 1.4e-06 57.0 42 73.8
Actinidia32368 Actinidia chinensis HOM05D002690 ORTHO05D005709 1.8e-06 56.6 56 62.5
MBI18_g10583_MAGBIO Magnolia biondii HOM05D002690 ORTHO05D005709 1.8e-06 56.6 66 57.6
TAR626G1080 Trochodendron aralioides HOM05D002690 ORTHO05D005709 1.8e-06 56.6 49 67.3
Atru.chr10.891 Acer truncatum HOM05D002690 ORTHO05D005709 2.4e-06 56.2 67 59.7
CANSAT35G0839 Cannabis sativa HOM05D002690 ORTHO05D005709 2.4e-06 56.2 42 73.8
Cfa000832 Carpinus fangiana HOM05D002690 ORTHO05D005709 2.4e-06 56.2 42 73.8
CiPaw.09G115900 Carya illinoinensis HOM05D002690 ORTHO05D005709 2.4e-06 56.2 42 73.8
CiPaw.10G086100 Carya illinoinensis HOM05D002690 ORTHO05D005709 2.4e-06 56.2 42 73.8
Haze_05773 Corylus avellana HOM05D002690 ORTHO05D005709 2.4e-06 56.2 42 73.8
Migut.M01886 Erythranthe guttata HOM05D002690 ORTHO05D005709 2.4e-06 56.2 62 53.2
FvH4_3g09980 Fragaria vesca HOM05D002690 ORTHO05D005709 2.4e-06 56.2 42 73.8
FAN21G3939 Fragaria x ananassa HOM05D002690 ORTHO05D005709 2.4e-06 56.2 42 73.8
Gohir.A12G045500 Gossypium hirsutum HOM05D002690 ORTHO05D005709 2.4e-06 56.2 42 73.8
Gohir.D12G044500 Gossypium hirsutum HOM05D002690 ORTHO05D005709 2.4e-06 56.2 42 73.8
Gorai.008G046800 Gossypium raimondii HOM05D002690 ORTHO05D005709 2.4e-06 56.2 42 73.8
MD05G1274200 Malus domestica HOM05D002690 ORTHO05D005709 2.4e-06 56.2 68 52.9
Manes.14G122500 Manihot esculenta HOM05D002690 ORTHO05D005709 2.4e-06 56.2 42 73.8
RcHm_v2.0_Chr5g0015861 Rosa chinensis HOM05D002690 ORTHO05D005709 2.4e-06 56.2 42 73.8
Thecc.02G012500 Theobroma cacao HOM05D002690 ORTHO05D005709 2.4e-06 56.2 42 73.8
TWI09G1166 Tripterygium wilfordii HOM05D002690 ORTHO05D005709 2.4e-06 56.2 42 73.8
unitig_61.g26082 Utricularia gibba HOM05D002690 ORTHO05D005709 2.4e-06 56.2 42 73.8
CDE04G1060 Ceratophyllum demersum HOM05D002690 ORTHO05D005709 3.1e-06 55.8 73 57.5
AUR62042460 Chenopodium quinoa HOM05D002690 ORTHO05D005709 3.1e-06 55.8 80 48.8
FAN11G1563 Fragaria x ananassa HOM05D002690 ORTHO05D005709 3.1e-06 55.8 43 72.1
FAN16G3174 Fragaria x ananassa HOM05D002690 ORTHO05D005709 3.1e-06 55.8 43 72.1
FAN25G1940 Fragaria x ananassa HOM05D002690 ORTHO05D005709 3.1e-06 55.8 43 72.1
Nn3g20245 Nelumbo nucifera HOM05D002690 ORTHO05D005709 3.1e-06 55.8 32 87.5
CAN.G660.45 Capsicum annuum HOM05D002690 ORTHO05D005709 4.1e-06 55.5 31 90.3
Eucgr.E02496 Eucalyptus grandis HOM05D002690 ORTHO05D005709 4.1e-06 55.5 31 90.3
Nitab4.5_0000100g0020 Nicotiana tabacum HOM05D002690 ORTHO05D005709 4.1e-06 55.5 31 90.3
Potri.001G357800 Populus trichocarpa HOM05D002690 ORTHO05D005709 4.1e-06 55.5 42 73.8
PGR031G1950 Punica granatum HOM05D002690 ORTHO05D005709 4.1e-06 55.5 31 90.3
Sc24g0001450 Simmondsia chinensis HOM05D002690 ORTHO05D005709 4.1e-06 55.5 31 90.3
Solyc02g021760.3 Solanum lycopersicum HOM05D002690 ORTHO05D005709 4.1e-06 55.5 31 90.3
Solyc02g070240.3 Solanum lycopersicum HOM05D002690 ORTHO05D005709 4.1e-06 55.5 31 90.3
Sopen02g006300 Solanum pennellii HOM05D002690 ORTHO05D005709 4.1e-06 55.5 31 90.3
Sopen02g019330 Solanum pennellii HOM05D002690 ORTHO05D005709 4.1e-06 55.5 31 90.3
vmacro03397 Vaccinium macrocarpon HOM05D002690 ORTHO05D005709 4.1e-06 55.5 31 90.3
GSVIVG01021617001 Vitis vinifera HOM05D002690 ORTHO05D005709 4.1e-06 55.5 31 90.3
Actinidia31389 Actinidia chinensis HOM05D001466 ORTHO05D005709 5.3e-06 55.1 56 58.9
arahy.Tifrunner.gnm1.ann1.9EB9RH Arachis hypogaea HOM05D002690 ORTHO05D005709 5.3e-06 55.1 42 73.8
arahy.Tifrunner.gnm1.ann1.XVC3D4 Arachis hypogaea HOM05D002690 ORTHO05D005709 5.3e-06 55.1 42 73.8
Ca_00801_v3 Cicer arietinum L. HOM05D002690 ORTHO05D005709 5.3e-06 55.1 42 73.8
ECA236G0560 Erigeron canadensis HOM05D002690 ORTHO05D005709 5.3e-06 55.1 42 73.8
Glyma.09G022200 Glycine max HOM05D002690 ORTHO05D005709 5.3e-06 55.1 42 73.8
Glyma.15G128500 Glycine max HOM05D002690 ORTHO05D005709 5.3e-06 55.1 42 73.8
Lj6g0003051 Lotus japonicus HOM05D002690 ORTHO05D005709 5.3e-06 55.1 42 73.8
Lalb_Chr15g0088721 Lupinus albus HOM05D002690 ORTHO05D005709 5.3e-06 55.1 42 73.8
Lalb_Chr18g0057871 Lupinus albus HOM05D002690 ORTHO05D005709 5.3e-06 55.1 42 73.8
MD10G1253900 Malus domestica HOM05D002690 ORTHO05D005709 5.3e-06 55.1 42 71.4
Medtr2g029540 Medicago truncatula HOM05D002690 ORTHO05D005709 5.3e-06 55.1 42 73.8
Nitab4.5_0001181g0060 Nicotiana tabacum HOM05D002690 ORTHO05D005709 5.3e-06 55.1 31 90.3
PSO541G0016 Papaver somniferum HOM05D002690 ORTHO05D005709 5.3e-06 55.1 55 61.8
PSO675G8993 Papaver somniferum HOM05D002690 ORTHO05D005709 5.3e-06 55.1 42 71.4
Phvul.006G130200 Phaseolus vulgaris HOM05D002690 ORTHO05D005709 5.3e-06 55.1 42 73.8
Psat1g168520 Pisum sativum HOM05D002690 ORTHO05D005709 5.3e-06 55.1 42 73.8
SalBow7G2713 Salvia bowleyana HOM05D002690 ORTHO05D005709 5.3e-06 55.1 31 87.1
TPR.G30088 Trifolium pratense HOM05D002690 ORTHO05D005709 5.3e-06 55.1 78 48.7
VMungo0540G2147 Vigna mungo HOM05D002690 ORTHO05D005709 5.3e-06 55.1 42 73.8
Thhalv10007064m.g Eutrema salsugineum HOM05D002690 ORTHO05D005709 6.9e-06 54.7 42 69.0
Hund26562 Selenicereus undatus HOM05D002690 ORTHO05D005709 6.9e-06 54.7 59 57.6
Aa31LG10G6630 Aethionema arabicum HOM05D002690 ORTHO05D005709 9.1e-06 54.3 31 87.1
Aqoxy1G01608 Aquilegia oxysepala HOM05D002690 ORTHO05D005709 9.1e-06 54.3 42 69.0
CSS0024768 Camellia sinensis var. sinensis HOM05D002690 ORTHO05D005709 9.1e-06 54.3 31 87.1
Nitab4.5_0000607g0100 Nicotiana tabacum HOM05D002690 ORTHO05D005709 9.1e-06 54.3 81 46.9
Oeu060303.1 Olea europaea HOM05D002690 ORTHO05D005709 9.1e-06 54.3 69 53.6


User provided reference genes

Program Settings