Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C030371.2 Cucumis melo HOM05D006953 ORTHO05D008556 4.1e-104 381.3 186 100.0
GSVIVG01034200001 Vitis vinifera HOM05D006953 ORTHO05D008556 5.2e-14 82.0 41 90.2
Manes.10G032302 Manihot esculenta HOM05D006953 ORTHO05D008556 8.9e-14 81.3 47 85.1
Os07g0620500 Oryza sativa ssp. japonica HOM05D006953 ORTHO05D008556 1.5e-13 80.5 61 68.9
Manes.08G128230 Manihot esculenta HOM05D006953 ORTHO05D008556 2.0e-13 80.1 38 97.4
Potri.010G207100 Populus trichocarpa HOM05D006953 ORTHO05D008556 2.0e-13 80.1 38 97.4
PGR044G1841 Punica granatum HOM05D006953 ORTHO05D008556 2.0e-13 80.1 38 97.4
Manes.09G090100 Manihot esculenta HOM05D006953 ORTHO05D008556 5.8e-13 78.6 38 94.7
Nn6g34196 Nelumbo nucifera HOM05D006953 ORTHO05D008556 5.8e-13 78.6 39 92.3
CiPaw.10G144400 Carya illinoinensis HOM05D006953 ORTHO05D008556 7.5e-13 78.2 38 92.1
Potri.008G053300 Populus trichocarpa HOM05D006953 ORTHO05D008556 7.5e-13 78.2 38 94.7
THA.LOC104816283 Tarenaya hassleriana HOM05D006953 ORTHO05D008556 7.5e-13 78.2 38 92.1
Actinidia02894 Actinidia chinensis HOM05D005343 ORTHO05D008556 9.8e-13 77.8 38 94.7
Cc06_g02830 Coffea canephora HOM05D006953 ORTHO05D008556 9.8e-13 77.8 38 94.7
COL.COLO4_14834 Corchorus olitorius HOM05D000248 ORTHO05D000146 9.8e-13 77.8 38 94.7
Duzib128G1377 Durio zibethinus HOM05D006953 ORTHO05D008556 9.8e-13 77.8 38 94.7
Prupe.6G252200 Prunus persica HOM05D006953 ORTHO05D008556 9.8e-13 77.8 38 94.7
TWI74G1054 Tripterygium wilfordii HOM05D006953 ORTHO05D008556 9.8e-13 77.8 38 94.7
CAN.G97.41 Capsicum annuum HOM05D006953 ORTHO05D008556 1.3e-12 77.4 38 92.1
Thecc.05G042200 Theobroma cacao HOM05D006953 ORTHO05D008556 1.7e-12 77.0 38 89.5
SGA_v2.0_scaffold27G11723 Striga asiatica HOM05D006953 ORTHO05D008556 2.2e-12 76.6 44 81.8
Migut.A00495 Erythranthe guttata HOM05D006953 ORTHO05D008556 2.9e-12 76.3 38 92.1
Gohir.A09G157400 Gossypium hirsutum HOM05D006953 ORTHO05D008556 2.9e-12 76.3 38 92.1
Gohir.D09G152700 Gossypium hirsutum HOM05D006953 ORTHO05D008556 2.9e-12 76.3 38 92.1
Gorai.006G174200 Gossypium raimondii HOM05D006953 ORTHO05D008556 2.9e-12 76.3 38 92.1
Hund17592 Selenicereus undatus HOM05D006953 ORTHO05D008556 2.9e-12 76.3 38 92.1
vmacro20134 Vaccinium macrocarpon HOM05D006953 ORTHO05D008556 2.9e-12 76.3 42 81.0
CANSAT56G0829 Cannabis sativa HOM05D006953 ORTHO05D008556 4.9e-12 75.5 38 92.1
CANSAT56G2326 Cannabis sativa HOM05D006953 ORTHO05D008556 4.9e-12 75.5 38 92.1
Duzib106G1537 Durio zibethinus HOM05D006953 ORTHO05D008556 4.9e-12 75.5 38 89.5
Potri.008G053200 Populus trichocarpa HOM05D006953 ORTHO05D008556 4.9e-12 75.5 38 92.1
Actinidia13138 Actinidia chinensis HOM05D006953 ORTHO05D008556 6.4e-12 75.1 38 92.1
FAN09G0966 Fragaria x ananassa HOM05D006953 ORTHO05D008556 8.3e-12 74.7 35 97.1
FAN14G5692 Fragaria x ananassa HOM05D006953 ORTHO05D008556 8.3e-12 74.7 35 97.1
TWI53G1308 Tripterygium wilfordii HOM05D006953 ORTHO05D008556 8.3e-12 74.7 38 89.5
Glyma.03G171300 Glycine max HOM05D006953 ORTHO05D008556 1.1e-11 74.3 38 86.8
Glyma.19G172400 Glycine max HOM05D006953 ORTHO05D008556 1.1e-11 74.3 38 86.8
Phvul.005G001900 Phaseolus vulgaris HOM05D006953 ORTHO05D008556 1.1e-11 74.3 38 86.8
CSS0025790 Camellia sinensis var. sinensis HOM05D006953 ORTHO05D008556 1.4e-11 73.9 38 92.1
Medtr7g099720 Medicago truncatula HOM05D006953 ORTHO05D008556 1.4e-11 73.9 38 86.8
Os03g0392050 Oryza sativa ssp. japonica HOM05D006953 ORTHO05D008556 1.4e-11 73.9 38 89.5
Thhalv10021844m.g Eutrema salsugineum HOM05D006953 ORTHO05D008556 1.9e-11 73.6 53 73.6
MD04G1125200 Malus domestica HOM05D006953 ORTHO05D008556 1.9e-11 73.6 38 86.8
Thecc.10G046100 Theobroma cacao HOM05D006953 ORTHO05D008556 2.4e-11 73.2 41 82.9
CARHR083870 Cardamine hirsuta HOM05D006953 ORTHO05D008556 3.2e-11 72.8 40 77.5
PSO801G0549 Papaver somniferum HOM05D006953 ORTHO05D008556 3.2e-11 72.8 38 89.5
ECA236G4263 Erigeron canadensis HOM05D006953 ORTHO05D008556 4.1e-11 72.4 76 53.9
BolC9t60140H Brassica oleracea HOM05D006953 ORTHO05D008556 7.0e-11 71.6 97 41.2
Duzib114G0949 Durio zibethinus HOM05D006953 ORTHO05D008556 7.0e-11 71.6 38 86.8
AL3G20640 Arabidopsis lyrata HOM05D006953 ORTHO05D008556 9.2e-11 71.2 35 88.6
AT3G09455 Arabidopsis thaliana HOM05D006953 ORTHO05D008556 9.2e-11 71.2 35 88.6
Carub.0003s0856 Capsella rubella HOM05D006953 ORTHO05D008556 9.2e-11 71.2 35 88.6
PSO339G5949 Papaver somniferum HOM05D006953 ORTHO05D008556 9.2e-11 71.2 38 86.8
TWI15G0277 Tripterygium wilfordii HOM05D006953 ORTHO05D008556 9.2e-11 71.2 38 84.2
BolC3t12664H Brassica oleracea HOM05D006953 ORTHO05D008556 1.2e-10 70.9 56 60.7
PSO384G5050 Papaver somniferum HOM05D006953 ORTHO05D008556 1.2e-10 70.9 38 86.8
BcaB01g06171 Brassica carinata HOM05D001365 ORTHO05D001291 1.6e-10 70.5 61 55.7
BcaB01g06189 Brassica carinata HOM05D001365 ORTHO05D001291 1.6e-10 70.5 61 55.7
Duzib106G0684 Durio zibethinus HOM05D006953 ORTHO05D008556 1.6e-10 70.5 38 84.2
Gohir.A13G019700 Gossypium hirsutum HOM05D006953 ORTHO05D008556 1.6e-10 70.5 38 84.2
Gohir.D10G225201 Gossypium hirsutum HOM05D006953 ORTHO05D008556 1.6e-10 70.5 38 86.8
Gohir.D13G020300 Gossypium hirsutum HOM05D006953 ORTHO05D008556 1.6e-10 70.5 38 84.2
Gorai.011G256200 Gossypium raimondii HOM05D006953 ORTHO05D008556 1.6e-10 70.5 38 86.8
C03p01030 Brassica napus HOM05D006953 ORTHO05D008556 2.0e-10 70.1 37 81.1
Ciclev10033290m.g Citrus clementina HOM05D006953 ORTHO05D008556 2.0e-10 70.1 38 84.2
Eucgr.K03148 Eucalyptus grandis HOM05D006953 ORTHO05D008556 2.0e-10 70.1 38 84.2
Gohir.A10G216201 Gossypium hirsutum HOM05D006953 ORTHO05D008556 2.0e-10 70.1 38 84.2
arahy.Tifrunner.gnm1.ann1.NW0172 Arachis hypogaea HOM05D003758 ORTHO05D008556 2.7e-10 69.7 38 81.6
A03p00780 Brassica napus HOM05D006953 ORTHO05D008556 2.7e-10 69.7 35 85.7
BraA03t09462Z Brassica rapa HOM05D001365 ORTHO05D001291 2.7e-10 69.7 35 85.7
THA.LOC104799351 Tarenaya hassleriana HOM05D006953 ORTHO05D008556 2.7e-10 69.7 38 84.2
Nn1g01406 Nelumbo nucifera HOM05D006953 ORTHO05D008556 3.5e-10 69.3 39 79.5
Thhalv10021851m.g Eutrema salsugineum HOM05D006953 ORTHO05D008556 4.6e-10 68.9 49 63.3
Gohir.A01G223600 Gossypium hirsutum HOM05D006953 ORTHO05D008556 4.6e-10 68.9 35 88.6
Gohir.D01G212800 Gossypium hirsutum HOM05D006953 ORTHO05D008556 4.6e-10 68.9 35 88.6
Gorai.002G258800 Gossypium raimondii HOM05D006953 ORTHO05D008556 4.6e-10 68.9 35 88.6
C04p60710 Brassica napus HOM05D006953 ORTHO05D008556 7.8e-10 68.2 35 82.9
COL.COLO4_14982 Corchorus olitorius HOM05D006953 ORTHO05D008556 7.8e-10 68.2 46 69.6
AL6G11750 Arabidopsis lyrata HOM05D006953 ORTHO05D008556 1.0e-09 67.8 35 82.9
Aa31LG3G80 Aethionema arabicum HOM05D006953 ORTHO05D008556 1.3e-09 67.4 80 47.5
AT5G02502 Arabidopsis thaliana HOM05D006953 ORTHO05D008556 1.3e-09 67.4 35 80.0
AL3G24240 Arabidopsis lyrata HOM05D006953 ORTHO05D008556 1.7e-09 67.0 38 81.6
AT3G12587 Arabidopsis thaliana HOM05D006953 ORTHO05D008556 1.7e-09 67.0 38 81.6
Carub.0003s1193 Capsella rubella HOM05D006953 ORTHO05D008556 1.7e-09 67.0 38 81.6
BolC4t27560H Brassica oleracea HOM05D006953 ORTHO05D008556 2.3e-09 66.6 35 80.0
Nn3g21523 Nelumbo nucifera HOM05D006953 ORTHO05D008556 2.3e-09 66.6 36 75.0
EL10Ac8g18952 Beta vulgaris HOM05D006953 ORTHO05D008556 5.0e-09 65.5 33 84.8
BcaC01g04017 Brassica carinata HOM05D006953 ORTHO05D008556 5.0e-09 65.5 42 69.0
CARHR087090 Cardamine hirsuta HOM05D006953 ORTHO05D008556 6.6e-09 65.1 35 85.7
Mapoly0086s0029 Marchantia polymorpha HOM05D006953 ORTHO05D008556 8.6e-09 64.7 35 80.0
PGR142G3972 Punica granatum HOM05D006953 ORTHO05D008556 1.1e-08 64.3 38 76.3
BraA03t12923Z Brassica rapa HOM05D006953 ORTHO05D008556 1.5e-08 63.9 38 76.3
TWI63G1588 Tripterygium wilfordii HOM05D006953 ORTHO05D008556 1.5e-08 63.9 38 73.7
BraA10t45347Z Brassica rapa HOM05D006953 ORTHO05D008556 3.3e-08 62.8 35 77.1
FAN03G0258 Fragaria x ananassa HOM05D006953 ORTHO05D008556 3.3e-08 62.8 74 45.9
BolC3t16848H Brassica oleracea HOM05D006953 ORTHO05D008556 4.3e-08 62.4 38 73.7
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 9.5e-08 61.2 38 76.3
BNapus_Darmor_BZH_scaffold_149p00110 Brassica napus HOM05D006953 ORTHO05D008556 9.5e-08 61.2 38 76.3
C01p52590 Brassica napus HOM05D006953 ORTHO05D008556 9.5e-08 61.2 38 76.3
BolC1t05198H Brassica oleracea HOM05D006953 ORTHO05D008556 9.5e-08 61.2 38 76.3
BraA01t04125Z Brassica rapa HOM05D006953 ORTHO05D008556 9.5e-08 61.2 38 76.3
FAN10G2372 Fragaria x ananassa HOM05D006953 ORTHO05D008556 9.5e-08 61.2 61 50.8
BolC5t34201H Brassica oleracea HOM05D006953 ORTHO05D008556 1.2e-07 60.8 38 71.1
FAN01G1395 Fragaria x ananassa HOM05D006953 ORTHO05D008556 2.8e-07 59.7 38 73.7
FAN01G2049 Fragaria x ananassa HOM05D006953 ORTHO05D008556 2.8e-07 59.7 38 73.7
FAN06G2124 Fragaria x ananassa HOM05D006953 ORTHO05D008556 2.8e-07 59.7 38 73.7
FAN06G2412 Fragaria x ananassa HOM05D006953 ORTHO05D008556 2.8e-07 59.7 38 73.7
RcHm_v2.0_Chr1g0366451 Rosa chinensis HOM05D006953 ORTHO05D008556 2.8e-07 59.7 38 71.1
CANSAT35G0750 Cannabis sativa HOM05D006953 ORTHO05D008556 3.6e-07 59.3 38 73.7
SEGI_27928 Sequoiadendron giganteum HOM05D006953 ORTHO05D008556 3.6e-07 59.3 37 70.3
BraA09t36404Z Brassica rapa HOM05D006953 ORTHO05D008556 4.7e-07 58.9 30 83.3
ECA232G3005 Erigeron canadensis HOM05D006953 ORTHO05D008556 4.7e-07 58.9 35 77.1
MD07G1195400 Malus domestica HOM05D006953 ORTHO05D008556 4.7e-07 58.9 38 73.7
Pp3c21_16500 Physcomitrium patens HOM05D006953 ORTHO05D008556 8.0e-07 58.2 38 65.8
Glyma.13G258200 Glycine max HOM05D006953 ORTHO05D008556 1.4e-06 57.4 38 71.1
CsaV3_3G049020 Cucumis sativus L. HOM05D006953 ORTHO05D008556 4.0e-06 55.8 34 79.4
Phvul.006G203200 Phaseolus vulgaris HOM05D006953 ORTHO05D008556 6.8e-06 55.1 38 71.1
MD01G1125600 Malus domestica HOM05D006953 ORTHO05D008556 8.9e-06 54.7 39 61.5


User provided reference genes

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