Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C029935.2 Cucumis melo HOM05D003358 ORTHO05D003864 2.7e-166 588.6 298 100.0
ClCG09G006810 Citrullus lanatus HOM05D003358 ORTHO05D003864 1.4e-16 91.3 102 55.9
MELO3C015867.2 Cucumis melo HOM05D003358 ORTHO05D003864 3.1e-16 90.1 102 54.9
CsaV3_7G028540 Cucumis sativus L. HOM05D003358 ORTHO05D003864 4.0e-16 89.7 102 53.9
Prupe.8G246900 Prunus persica HOM05D003358 ORTHO05D003864 4.0e-16 89.7 107 52.3
Sed0022837 Sechium edule HOM05D003358 ORTHO05D003864 2.0e-15 87.4 102 52.9
QL12p022545 Quercus lobata HOM05D003358 ORTHO05D003864 2.6e-15 87.0 97 52.6
arahy.Tifrunner.gnm1.ann1.N9ZP1U Arachis hypogaea HOM05D003358 ORTHO05D003864 3.4e-15 86.7 127 42.5
TPR.G13400 Trifolium pratense HOM05D003358 ORTHO05D003864 3.4e-15 86.7 99 50.5
Sed0023278 Sechium edule HOM05D003358 ORTHO05D003864 7.5e-15 85.5 103 54.4
RcHm_v2.0_Chr6g0291861 Rosa chinensis HOM05D003358 ORTHO05D003864 1.7e-14 84.3 102 49.0
FvH4_2g24080 Fragaria vesca HOM05D003358 ORTHO05D003864 2.2e-14 84.0 97 51.5
FAN15G0418 Fragaria x ananassa HOM05D003358 ORTHO05D003864 2.2e-14 84.0 97 51.5
FAN20G3017 Fragaria x ananassa HOM05D003358 ORTHO05D003864 2.2e-14 84.0 97 51.5
FAN24G0501 Fragaria x ananassa HOM05D003358 ORTHO05D003864 2.2e-14 84.0 97 51.5
FAN27G2094 Fragaria x ananassa HOM05D003358 ORTHO05D003864 2.9e-14 83.6 97 50.5
CiPaw.07G095400 Carya illinoinensis HOM05D003358 ORTHO05D003864 3.7e-14 83.2 97 49.5
Ca_10402_v3 Cicer arietinum L. HOM05D003358 ORTHO05D003864 4.9e-14 82.8 114 44.7
Eucgr.H01525 Eucalyptus grandis HOM05D003358 ORTHO05D003864 4.9e-14 82.8 112 45.5
MD03G1270200 Malus domestica HOM05D003358 ORTHO05D003864 4.9e-14 82.8 104 50.0
Haze_04760 Corylus avellana HOM05D003358 ORTHO05D003864 6.4e-14 82.4 96 49.0
Sc17g0003900 Simmondsia chinensis HOM05D003358 ORTHO05D003864 8.3e-14 82.0 97 49.5
MD11G1291200 Malus domestica HOM05D003358 ORTHO05D003864 1.1e-13 81.6 107 48.6
CSS0018318 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 1.4e-13 81.3 102 49.0
Lj1C44G0 Lonicera japonica HOM05D003358 ORTHO05D003864 1.4e-13 81.3 97 49.5
CAN.G1682.13 Capsicum annuum HOM05D003358 ORTHO05D003864 1.9e-13 80.9 112 45.5
Lalb_Chr06g0163131 Lupinus albus HOM05D003358 ORTHO05D003864 1.9e-13 80.9 112 44.6
Cfa006095 Carpinus fangiana HOM05D003358 ORTHO05D003864 2.4e-13 80.5 96 45.8
Potri.014G138000 Populus trichocarpa HOM05D003358 ORTHO05D003864 2.4e-13 80.5 99 48.5
Ciclev10020955m.g Citrus clementina HOM05D003358 ORTHO05D003864 4.1e-13 79.7 98 50.0
Dinv11261 Davidia involucrata HOM05D003358 ORTHO05D003864 4.1e-13 79.7 102 49.0
Zm00001eb110530 Zea mays HOM05D003358 ORTHO05D003864 4.1e-13 79.7 97 47.4
Glyma.10G024100 Glycine max HOM05D003358 ORTHO05D003864 5.4e-13 79.3 111 43.2
MBI17_g17897_MAGBIO Magnolia biondii HOM05D003358 ORTHO05D003864 5.4e-13 79.3 99 50.5
Oeu001439.1 Olea europaea HOM05D003358 ORTHO05D003864 5.4e-13 79.3 97 49.5
Atru.chr5.1347 Acer truncatum HOM05D003358 ORTHO05D003864 7.1e-13 79.0 102 49.0
Actinidia24873 Actinidia chinensis HOM05D003358 ORTHO05D003864 7.1e-13 79.0 97 47.4
Ciclev10020957m.g Citrus clementina HOM05D003358 ORTHO05D003864 1.2e-12 78.2 98 48.0
Glyma.02G149800 Glycine max HOM05D003358 ORTHO05D003864 1.2e-12 78.2 111 42.3
Manes.05G072700 Manihot esculenta HOM05D003358 ORTHO05D003864 1.2e-12 78.2 97 45.4
Thecc.01G284800 Theobroma cacao HOM05D003358 ORTHO05D003864 1.2e-12 78.2 102 52.0
TWI23G0223 Tripterygium wilfordii HOM05D003358 ORTHO05D003864 1.6e-12 77.8 112 42.0
Actinidia00727 Actinidia chinensis HOM05D003358 ORTHO05D003864 2.1e-12 77.4 100 49.0
CANSAT25G0133 Cannabis sativa HOM05D003358 ORTHO05D003864 2.1e-12 77.4 97 45.4
Rhsim01G0276900 Rhododendron simsii HOM05D003358 ORTHO05D003864 2.1e-12 77.4 97 49.5
TPR.G13299 Trifolium pratense HOM05D003358 ORTHO05D003864 2.1e-12 77.4 99 46.5
vmacro14942 Vaccinium macrocarpon HOM05D003358 ORTHO05D003864 2.7e-12 77.0 110 43.6
ATR0626G053 Amborella trichopoda HOM05D003358 ORTHO05D003864 3.5e-12 76.6 101 41.6
arahy.Tifrunner.gnm1.ann1.KX9J6A Arachis hypogaea HOM05D003358 ORTHO05D003864 3.5e-12 76.6 162 34.6
CDE05G1806 Ceratophyllum demersum HOM05D003358 ORTHO05D003864 3.5e-12 76.6 96 44.8
Sabra14G0104100 Salix brachista HOM05D003358 ORTHO05D003864 3.5e-12 76.6 97 46.4
Solyc06g084360.4 Solanum lycopersicum HOM05D003358 ORTHO05D003864 3.5e-12 76.6 112 43.8
Sopen06g035750 Solanum pennellii HOM05D003358 ORTHO05D003864 3.5e-12 76.6 112 43.8
PGSC0003DMG402020120 Solanum tuberosum HOM05D003358 ORTHO05D003864 3.5e-12 76.6 112 43.8
Duzib211G0202 Durio zibethinus HOM05D003358 ORTHO05D003864 4.6e-12 76.3 103 47.6
Medtr1g089900 Medicago truncatula HOM05D003358 ORTHO05D003864 4.6e-12 76.3 114 43.0
TAR633G1108 Trochodendron aralioides HOM05D003358 ORTHO05D003864 4.6e-12 76.3 111 42.3
GSVIVG01011070001 Vitis vinifera HOM05D003358 ORTHO05D003864 4.6e-12 76.3 107 44.9
Ah.08g212910 Amaranthus hybridus HOM05D003358 ORTHO05D003864 6.0e-12 75.9 46 71.7
Nn1g02094 Nelumbo nucifera HOM05D003358 ORTHO05D003864 6.0e-12 75.9 96 45.8
Hma1.2p1_0257F.1_g103860 Hydrangea macrophylla HOM05D003358 ORTHO05D003864 7.8e-12 75.5 96 46.9
CSS0003095 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 1.0e-11 75.1 97 47.4
Lj5g0011221 Lotus japonicus HOM05D003358 ORTHO05D003864 1.0e-11 75.1 123 39.8
CAN.G1682.14 Capsicum annuum HOM05D003358 ORTHO05D003864 1.3e-11 74.7 72 55.6
Peaxi162Scf00783g00337 Petunia axillaris HOM05D003358 ORTHO05D003864 1.3e-11 74.7 112 43.8
AUR62033697 Chenopodium quinoa HOM05D003358 ORTHO05D003864 1.7e-11 74.3 46 71.7
AUR62036783 Chenopodium quinoa HOM05D003358 ORTHO05D003864 1.7e-11 74.3 46 71.7
Phvul.007G169100 Phaseolus vulgaris HOM05D003358 ORTHO05D003864 1.7e-11 74.3 55 63.6
Psat6g168920 Pisum sativum HOM05D003358 ORTHO05D003864 1.7e-11 74.3 114 43.0
CDE07G0407 Ceratophyllum demersum HOM05D003358 ORTHO05D003864 2.3e-11 73.9 96 43.8
Gorai.007G133700 Gossypium raimondii HOM05D003358 ORTHO05D003864 2.3e-11 73.9 110 40.9
VMungo0720G0236 Vigna mungo HOM05D003358 ORTHO05D003864 2.3e-11 73.9 55 61.8
Nitab4.5_0002093g0030 Nicotiana tabacum HOM05D003358 ORTHO05D003864 3.0e-11 73.6 112 43.8
Nitab4.5_0007767g0030 Nicotiana tabacum HOM05D003358 ORTHO05D003864 3.0e-11 73.6 117 41.9
Thhalv10008106m.g Eutrema salsugineum HOM05D003358 ORTHO05D003864 5.1e-11 72.8 112 39.3
Gohir.A11G120000 Gossypium hirsutum HOM05D003358 ORTHO05D003864 5.1e-11 72.8 106 44.3
Lsat_1_v5_gn_9_4540 Lactuca sativa HOM05D003358 ORTHO05D003864 5.1e-11 72.8 97 46.4
SalBow4G3039 Salvia bowleyana HOM05D003358 ORTHO05D003864 5.1e-11 72.8 103 46.6
Gohir.A08G044700 Gossypium hirsutum HOM05D003358 ORTHO05D003864 6.6e-11 72.4 114 43.9
Gohir.D08G054400 Gossypium hirsutum HOM05D003358 ORTHO05D003864 6.6e-11 72.4 114 43.9
Gorai.004G054800 Gossypium raimondii HOM05D003358 ORTHO05D003864 6.6e-11 72.4 114 43.9
EL10Ac7g17196 Beta vulgaris HOM05D003358 ORTHO05D003864 8.6e-11 72.0 40 77.5
Os07g0647800 Oryza sativa ssp. japonica HOM05D003358 ORTHO05D003864 8.6e-11 72.0 38 81.6
Nn4g26144 Nelumbo nucifera HOM05D003358 ORTHO05D003864 1.1e-10 71.6 102 48.0
Hund05356 Selenicereus undatus HOM05D003358 ORTHO05D003864 1.1e-10 71.6 105 43.8
THA.LOC104823098 Tarenaya hassleriana HOM05D003358 ORTHO05D003864 1.1e-10 71.6 112 38.4
ECA247G2569 Erigeron canadensis HOM05D003358 ORTHO05D003864 1.5e-10 71.2 97 47.4
Duzib138G0559 Durio zibethinus HOM05D003358 ORTHO05D003864 1.9e-10 70.9 40 75.0
HanXRQChr10g0282971 Helianthus annuus HOM05D003358 ORTHO05D003864 1.9e-10 70.9 97 44.3
AL2G11230 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 2.5e-10 70.5 97 41.2
MSTRG.21581 Avicennia marina HOM05D003358 ORTHO05D003864 2.5e-10 70.5 103 43.7
Sp2g00790 Schrenkiella parvula HOM05D003358 ORTHO05D003864 2.5e-10 70.5 112 39.3
TAR362G0768 Trochodendron aralioides HOM05D003358 ORTHO05D003864 2.5e-10 70.5 40 75.0
CARHR047070 Cardamine hirsuta HOM05D003358 ORTHO05D003864 3.3e-10 70.1 97 41.2
DCAR_012453 Daucus carota HOM05D003358 ORTHO05D003864 3.3e-10 70.1 68 51.5
SMO116G0196 Selaginella moellendorffii HOM05D003358 ORTHO05D003864 7.3e-10 68.9 97 42.3
Carub.0002s0094 Capsella rubella HOM05D003358 ORTHO05D003864 9.5e-10 68.6 97 40.2
PSO170G4489 Papaver somniferum HOM05D003358 ORTHO05D003864 9.5e-10 68.6 106 42.5
HPP92_000042 Vanilla planifolia HOM05D003358 ORTHO05D003864 9.5e-10 68.6 40 72.5
A09p13990 Brassica napus HOM05D003358 ORTHO05D003864 1.6e-09 67.8 112 39.3
Cc01_g19840 Coffea canephora HOM05D003358 ORTHO05D003864 1.6e-09 67.8 40 72.5
Migut.D00256 Erythranthe guttata HOM05D003358 ORTHO05D003864 1.6e-09 67.8 103 45.6
Aa31LG1G29500 Aethionema arabicum HOM05D003358 ORTHO05D003864 2.1e-09 67.4 112 37.5
PSO407G0137 Papaver somniferum HOM05D003358 ORTHO05D003864 2.1e-09 67.4 100 44.0
Aqoxy2G03211 Aquilegia oxysepala HOM05D003358 ORTHO05D003864 3.6e-09 66.6 38 76.3
AT1G63900 Arabidopsis thaliana HOM05D003358 ORTHO05D003864 3.6e-09 66.6 97 40.2
BcaC04g22672 Brassica carinata HOM05D003358 ORTHO05D003864 3.6e-09 66.6 112 38.4
C09p16810 Brassica napus HOM05D003358 ORTHO05D003864 3.6e-09 66.6 112 38.4
BolC9t54582H Brassica oleracea HOM05D003358 ORTHO05D003864 3.6e-09 66.6 112 38.4
BraA09t37046Z Brassica rapa HOM05D003358 ORTHO05D003864 3.6e-09 66.6 112 39.3
MELO3C008843.2 Cucumis melo HOM05D024314 ORTHO05D000034 6.2e-09 65.9 61 59.0
SGA_v2.0_scaffold1G00442 Striga asiatica HOM05D003358 ORTHO05D003864 8.1e-09 65.5 94 43.6
Mapoly0009s0167 Marchantia polymorpha HOM05D003358 ORTHO05D003864 1.1e-08 65.1 85 43.5
BcaB07g31539 Brassica carinata HOM05D003358 ORTHO05D003864 1.4e-08 64.7 109 36.7
Thhalv10024073m.g Eutrema salsugineum HOM05D003358 ORTHO05D003864 1.8e-08 64.3 55 52.7
Rhsim13G0022000 Rhododendron simsii HOM05D003358 ORTHO05D003864 5.2e-08 62.8 117 39.3
vmacro02543 Vaccinium macrocarpon HOM05D003358 ORTHO05D003864 1.2e-07 61.6 100 44.0
SEGI_02468 Sequoiadendron giganteum HOM05D003358 ORTHO05D003864 1.5e-07 61.2 98 41.8
MELO3C029662.2 Cucumis melo HOM05D007786 ORTHO05D009980 2.0e-07 60.8 64 50.0
Pp3c22_7850 Physcomitrium patens HOM05D003358 ORTHO05D003864 3.4e-07 60.1 97 35.1
ClCG08G003900 Citrullus lanatus HOM05D000004 ORTHO05D000002 4.4e-07 59.7 99 38.4
CsaV3_5G014550 Cucumis sativus L. HOM05D024314 ORTHO05D000034 4.4e-07 59.7 79 44.3
Medtr7g094290 Medicago truncatula HOM05D003358 ORTHO05D003864 4.4e-07 59.7 117 39.3
unitig_0.g80 Utricularia gibba HOM05D003358 ORTHO05D003864 4.4e-07 59.7 38 63.2
ClCG09G014120 Citrullus lanatus HOM05D000004 ORTHO05D000034 1.3e-06 58.2 88 36.4
MELO3C019071.2 Cucumis melo HOM05D007786 ORTHO05D000034 1.3e-06 58.2 44 59.1
MELO3C033340.2 Cucumis melo HOM05D000539 ORTHO05D000233 2.9e-06 57.0 51 51.0
ClCG04G003440 Citrullus lanatus HOM05D000004 ORTHO05D000034 4.9e-06 56.2 82 36.6
MD11G1291000 Malus domestica HOM05D003358 ORTHO05D003864 6.4e-06 55.8 38 60.5
Pp3c19_9460 Physcomitrium patens HOM05D003358 ORTHO05D003864 6.4e-06 55.8 99 35.4
CsaV3_2G012150 Cucumis sativus L. HOM05D029834 ORTHO05D000224 8.4e-06 55.5 85 37.6
Medtr1g089960 Medicago truncatula HOM05D003358 ORTHO05D003864 8.4e-06 55.5 55 52.7


User provided reference genes

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