Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C029638.2 Cucumis melo HOM05D000544 ORTHO05D167577 7.7e-50 200.3 109 100.0
CsaV3_7G034590 Cucumis sativus L. HOM05D000544 ORTHO05D000479 1.3e-12 76.6 44 93.2
MELO3C024365.2 Cucumis melo HOM05D000544 ORTHO05D000479 4.9e-12 74.7 43 93.0
ClCG09G000880 Citrullus lanatus HOM05D000544 ORTHO05D000479 4.1e-11 71.6 44 86.4
Sed0026174 Sechium edule HOM05D000544 ORTHO05D000479 9.2e-11 70.5 44 81.8
MELO3C029884.2 Cucumis melo HOM05D000544 ORTHO05D169347 4.6e-10 68.2 40 90.0
MELO3C035339.2 Cucumis melo HOM05D000544 ORTHO05D166608 1.3e-09 66.6 40 90.0
Sed0017049 Sechium edule HOM05D000544 ORTHO05D000479 3.9e-09 65.1 53 71.7
Lj8A456G13 Lonicera japonica HOM05D000544 ORTHO05D000479 9.5e-08 60.5 51 66.7
Lalb_Chr24g0396611 Lupinus albus HOM05D000544 ORTHO05D000479 9.5e-08 60.5 44 77.3
MELO3C034342.2 Cucumis melo HOM05D000946 ORTHO05D166868 2.1e-07 59.3 30 100.0
GSVIVG01015122001 Vitis vinifera HOM05D000544 ORTHO05D000479 2.1e-07 59.3 51 64.7
GSVIVG01016791001 Vitis vinifera HOM05D000544 ORTHO05D000479 2.1e-07 59.3 51 64.7
GSVIVG01035442001 Vitis vinifera HOM05D000544 ORTHO05D000479 2.1e-07 59.3 51 64.7
arahy.Tifrunner.gnm1.ann1.L1M2YQ Arachis hypogaea HOM05D000544 ORTHO05D016640 2.8e-07 58.9 52 63.5
Lj8A489T39 Lonicera japonica HOM05D000544 ORTHO05D000479 2.8e-07 58.9 51 64.7
CiPaw.16G067500 Carya illinoinensis HOM05D000544 ORTHO05D000479 3.6e-07 58.5 46 67.4
Potri.006G223500 Populus trichocarpa HOM05D000544 ORTHO05D000479 3.6e-07 58.5 51 64.7
THA.LOC104799153 Tarenaya hassleriana HOM05D000544 ORTHO05D000479 3.6e-07 58.5 53 64.2
EL10Ac7g16392 Beta vulgaris HOM05D000544 ORTHO05D000479 4.7e-07 58.2 44 70.5
Cfa003547 Carpinus fangiana HOM05D000544 ORTHO05D000479 4.7e-07 58.2 53 64.2
Haze_16007 Corylus avellana HOM05D000544 ORTHO05D000479 4.7e-07 58.2 53 64.2
COL.COLO4_30784 Corchorus olitorius HOM05D000544 ORTHO05D000479 6.2e-07 57.8 51 62.7
Duzib150G1426 Durio zibethinus HOM05D000544 ORTHO05D000479 6.2e-07 57.8 51 62.7
Migut.L01540 Erythranthe guttata HOM05D000544 ORTHO05D000479 6.2e-07 57.8 51 68.6
Eucgr.C03146 Eucalyptus grandis HOM05D000544 ORTHO05D000479 6.2e-07 57.8 44 70.5
Lsat_1_v5_gn_5_78801 Lactuca sativa HOM05D000544 ORTHO05D000479 6.2e-07 57.8 51 62.7
MD09G1186300 Malus domestica HOM05D000544 ORTHO05D000479 6.2e-07 57.8 52 65.4
Manes.03G052000 Manihot esculenta HOM05D000544 ORTHO05D000479 6.2e-07 57.8 51 62.7
Manes.16G083900 Manihot esculenta HOM05D000544 ORTHO05D000479 6.2e-07 57.8 51 62.7
Medtr8g019520 Medicago truncatula HOM05D000544 ORTHO05D000479 6.2e-07 57.8 46 69.6
Phvul.010G133400 Phaseolus vulgaris HOM05D000544 ORTHO05D000479 6.2e-07 57.8 53 64.2
Thecc.09G060100 Theobroma cacao HOM05D000544 ORTHO05D000479 6.2e-07 57.8 51 62.7
arahy.Tifrunner.gnm1.ann1.15EC9B Arachis hypogaea HOM05D000544 ORTHO05D000479 8.0e-07 57.4 53 62.3
arahy.Tifrunner.gnm1.ann1.F09BQK Arachis hypogaea HOM05D000544 ORTHO05D000479 8.0e-07 57.4 53 62.3
COL.COLO4_21116 Corchorus olitorius HOM05D000544 ORTHO05D000479 8.0e-07 57.4 51 60.8
Haze_18133 Corylus avellana HOM05D000544 ORTHO05D000479 8.0e-07 57.4 51 62.7
MELO3C011479.2 Cucumis melo HOM05D000544 ORTHO05D000479 8.0e-07 57.4 44 68.2
CsaV3_6G032020 Cucumis sativus L. HOM05D000544 ORTHO05D000479 8.0e-07 57.4 44 68.2
Psat4g183640 Pisum sativum HOM05D000544 ORTHO05D000479 8.0e-07 57.4 44 72.7
Cpa.g.sc25.95 Carica papaya HOM05D000544 ORTHO05D000479 1.1e-06 57.0 44 68.2
Glyma.16G005400 Glycine max HOM05D000544 ORTHO05D000479 1.1e-06 57.0 46 67.4
Lj8A497T37 Lonicera japonica HOM05D000544 ORTHO05D000479 1.1e-06 57.0 51 62.7
Nitab4.5_0000024g0110 Nicotiana tabacum HOM05D000544 ORTHO05D000479 1.1e-06 57.0 51 60.8
Nitab4.5_0007106g0020 Nicotiana tabacum HOM05D000544 ORTHO05D000479 1.1e-06 57.0 51 60.8
Peaxi162Scf00240g01429 Petunia axillaris HOM05D000544 ORTHO05D000479 1.1e-06 57.0 51 58.8
SGA_v2.0_scaffold23G10067 Striga asiatica HOM05D000544 ORTHO05D000479 1.1e-06 57.0 45 66.7
VMungo0331G0910 Vigna mungo HOM05D000544 ORTHO05D000479 1.1e-06 57.0 46 67.4
CAN.G3503.1 Capsicum annuum HOM05D000544 ORTHO05D000479 1.4e-06 56.6 51 58.8
CAN.G825.19 Capsicum annuum HOM05D000544 ORTHO05D003645 1.4e-06 56.6 51 58.8
Dinv05114 Davidia involucrata HOM05D000544 ORTHO05D000479 1.4e-06 56.6 46 65.2
Lj7A239G48 Lonicera japonica HOM05D000544 ORTHO05D000479 1.4e-06 56.6 52 65.4
Lj7A245G51 Lonicera japonica HOM05D000544 ORTHO05D000479 1.4e-06 56.6 52 65.4
MBI19_g19952_MAGBIO Magnolia biondii HOM05D000544 ORTHO05D000479 1.4e-06 56.6 44 70.5
QL02p000366 Quercus lobata HOM05D000544 ORTHO05D000479 1.4e-06 56.6 46 65.2
Hund18694 Selenicereus undatus HOM05D000544 ORTHO05D000479 1.4e-06 56.6 51 60.8
Thecc.06G117400 Theobroma cacao HOM05D000544 ORTHO05D000479 1.4e-06 56.6 46 65.2
MSTRG.26456 Avicennia marina HOM05D000544 ORTHO05D000479 1.8e-06 56.2 42 71.4
CSS0014494 Camellia sinensis var. sinensis HOM05D000544 ORTHO05D000479 1.8e-06 56.2 42 69.0
Gohir.D05G041200 Gossypium hirsutum HOM05D000544 ORTHO05D000479 1.8e-06 56.2 51 64.7
Gorai.009G041700 Gossypium raimondii HOM05D000544 ORTHO05D000479 1.8e-06 56.2 51 64.7
Medtr2g099500 Medicago truncatula HOM05D000544 ORTHO05D000479 1.8e-06 56.2 42 69.0
Potri.018G050200 Populus trichocarpa HOM05D000544 ORTHO05D000479 1.8e-06 56.2 51 60.8
GSVIVG01015123001 Vitis vinifera HOM05D000844 ORTHO05D016640 1.8e-06 56.2 44 68.2
Atru.chr1.3876 Acer truncatum HOM05D000544 ORTHO05D000479 2.3e-06 55.8 51 56.9
Atru.chr1.3898 Acer truncatum HOM05D000544 ORTHO05D000479 2.3e-06 55.8 51 56.9
Cc08_g01390 Coffea canephora HOM05D000544 ORTHO05D000479 2.3e-06 55.8 46 67.4
Glyma.07G036100 Glycine max HOM05D000544 ORTHO05D000479 2.3e-06 55.8 45 66.7
Lalb_Chr14g0372631 Lupinus albus HOM05D000544 ORTHO05D000479 2.3e-06 55.8 35 77.1
Nn6g35574 Nelumbo nucifera HOM05D000844 ORTHO05D000680 2.3e-06 55.8 44 68.2
Nn8g38740 Nelumbo nucifera HOM05D000544 ORTHO05D000479 2.3e-06 55.8 44 68.2
Oeu002474.1 Olea europaea HOM05D000544 ORTHO05D000479 2.3e-06 55.8 51 62.7
Oeu002480.1 Olea europaea HOM05D000544 ORTHO05D000479 2.3e-06 55.8 51 62.7
Oeu002488.1 Olea europaea HOM05D000544 ORTHO05D000479 2.3e-06 55.8 51 62.7
Oeu039940.1 Olea europaea HOM05D000544 ORTHO05D000479 2.3e-06 55.8 51 62.7
Solyc12g096040.3 Solanum lycopersicum HOM05D000544 ORTHO05D000479 2.3e-06 55.8 51 60.8
SGA_v2.0_scaffold4G02058 Striga asiatica HOM05D000544 ORTHO05D000479 2.3e-06 55.8 44 70.5
THA.LOC104811226 Tarenaya hassleriana HOM05D000544 ORTHO05D000479 2.3e-06 55.8 42 66.7
ClCG08G009920 Citrullus lanatus HOM05D000544 ORTHO05D000479 3.1e-06 55.5 44 65.9
Duzib168G1976 Durio zibethinus HOM05D000544 ORTHO05D000479 3.1e-06 55.5 51 60.8
Duzib235G1350 Durio zibethinus HOM05D000544 ORTHO05D000479 3.1e-06 55.5 51 60.8
ECA234G1678 Erigeron canadensis HOM05D000544 ORTHO05D000479 3.1e-06 55.5 45 64.4
Glyma.14G099700 Glycine max HOM05D000544 ORTHO05D000479 3.1e-06 55.5 51 60.8
Glyma.17G225200 Glycine max HOM05D000544 ORTHO05D000479 3.1e-06 55.5 51 60.8
Lalb_Chr25g0281131 Lupinus albus HOM05D000544 ORTHO05D000479 3.1e-06 55.5 45 64.4
Actinidia25223 Actinidia chinensis HOM05D000544 ORTHO05D000479 4.0e-06 55.1 45 66.7
CAN.G148.13 Capsicum annuum HOM05D000544 ORTHO05D000479 4.0e-06 55.1 51 54.9
Ciclev10026319m.g Citrus clementina HOM05D000544 ORTHO05D000479 4.0e-06 55.1 51 60.8
Dinv25587 Davidia involucrata HOM05D000544 ORTHO05D000479 4.0e-06 55.1 46 63.0
Dinv37879 Davidia involucrata HOM05D000544 ORTHO05D000479 4.0e-06 55.1 51 58.8
Lj8P499T12 Lonicera japonica HOM05D000544 ORTHO05D011529 4.0e-06 55.1 44 68.2
Nitab4.5_0000738g0050 Nicotiana tabacum HOM05D000544 ORTHO05D000479 4.0e-06 55.1 51 58.8
Nitab4.5_0001488g0150 Nicotiana tabacum HOM05D000544 ORTHO05D000479 4.0e-06 55.1 44 61.4
Prupe.3G044000 Prunus persica HOM05D000544 ORTHO05D000479 4.0e-06 55.1 42 66.7
Sopen12g031930 Solanum pennellii HOM05D000544 ORTHO05D000479 4.0e-06 55.1 51 60.8
SGA_v2.0_scaffold21G09460 Striga asiatica HOM05D000544 ORTHO05D000479 4.0e-06 55.1 38 73.7
TAR383G0385 Trochodendron aralioides HOM05D000544 ORTHO05D000479 4.0e-06 55.1 44 65.9
VMungo0647G0557 Vigna mungo HOM05D000544 ORTHO05D000479 4.0e-06 55.1 45 64.4
Duzib192G0618 Durio zibethinus HOM05D000544 ORTHO05D000479 5.2e-06 54.7 51 58.8
Gohir.A05G039700 Gossypium hirsutum HOM05D000544 ORTHO05D000479 5.2e-06 54.7 51 60.8
HanXRQChr10g0309851 Helianthus annuus HOM05D000544 ORTHO05D000479 5.2e-06 54.7 42 61.9
Lj3g0027080 Lotus japonicus HOM05D000544 ORTHO05D000479 5.2e-06 54.7 42 66.7
Sabra18G0047000 Salix brachista HOM05D000544 ORTHO05D000479 5.2e-06 54.7 44 65.9
Solyc07g041190.3 Solanum lycopersicum HOM05D000544 ORTHO05D000479 5.2e-06 54.7 51 54.9
Sopen07g020460 Solanum pennellii HOM05D000544 ORTHO05D000479 5.2e-06 54.7 51 54.9
PGSC0003DMG400020951 Solanum tuberosum HOM05D000544 ORTHO05D000479 5.2e-06 54.7 51 54.9
Actinidia32172 Actinidia chinensis HOM05D000544 ORTHO05D000479 6.8e-06 54.3 51 62.7
MSTRG.9510 Avicennia marina HOM05D000544 ORTHO05D000479 6.8e-06 54.3 42 69.0
Cpa.g.sc28.95 Carica papaya HOM05D000544 ORTHO05D000479 6.8e-06 54.3 42 66.7
Migut.D00946 Erythranthe guttata HOM05D000544 ORTHO05D000479 6.8e-06 54.3 44 68.2
Lalb_Chr22g0351991 Lupinus albus HOM05D000544 ORTHO05D000479 6.8e-06 54.3 45 64.4
Nitab4.5_0009612g0020 Nicotiana tabacum HOM05D000544 ORTHO05D000479 6.8e-06 54.3 46 63.0
Peaxi162Scf00064g01819 Petunia axillaris HOM05D000544 ORTHO05D000479 6.8e-06 54.3 51 58.8
Rhsim08G0236900 Rhododendron simsii HOM05D000544 ORTHO05D000479 6.8e-06 54.3 51 62.7
Actinidia21784 Actinidia chinensis HOM05D000544 ORTHO05D000479 8.9e-06 53.9 51 60.8
CSS0017567 Camellia sinensis var. sinensis HOM05D000544 ORTHO05D000479 8.9e-06 53.9 51 58.8
Cc04_g01490 Coffea canephora HOM05D000544 ORTHO05D000479 8.9e-06 53.9 51 62.7
Migut.J00956 Erythranthe guttata HOM05D000544 ORTHO05D000479 8.9e-06 53.9 51 58.8
Thhalv10014469m.g Eutrema salsugineum HOM05D000544 ORTHO05D000479 8.9e-06 53.9 51 60.8
Hma1.2p1_0672F.1_g200810 Hydrangea macrophylla HOM05D000544 ORTHO05D000479 8.9e-06 53.9 51 58.8
MD15G1052900 Malus domestica HOM05D000544 ORTHO05D000479 8.9e-06 53.9 46 60.9
Nitab4.5_0006105g0010 Nicotiana tabacum HOM05D000544 ORTHO05D000479 8.9e-06 53.9 44 65.9
Oeu000423.1 Olea europaea HOM05D000544 ORTHO05D000479 8.9e-06 53.9 44 65.9
Phvul.001G039500 Phaseolus vulgaris HOM05D000544 ORTHO05D000479 8.9e-06 53.9 45 62.2
Hund05749 Selenicereus undatus HOM05D000544 ORTHO05D000479 8.9e-06 53.9 44 61.4
Sc15g0000480 Simmondsia chinensis HOM05D000544 ORTHO05D000479 8.9e-06 53.9 48 64.6
THA.LOC104824630 Tarenaya hassleriana HOM05D000544 ORTHO05D000479 8.9e-06 53.9 40 67.5
TPR.G6527 Trifolium pratense HOM05D000544 ORTHO05D000479 8.9e-06 53.9 35 74.3
TAR636G0991 Trochodendron aralioides HOM05D000544 ORTHO05D000479 8.9e-06 53.9 44 65.9
vmacro06309 Vaccinium macrocarpon HOM05D000544 ORTHO05D000479 8.9e-06 53.9 51 58.8
vmacro22215 Vaccinium macrocarpon HOM05D000544 ORTHO05D000479 8.9e-06 53.9 51 60.8


User provided reference genes

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