Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C028936.2 Cucumis melo HOM05D000247 ORTHO05D005467 7.2e-59 230.3 113 100.0
MELO3C027980.2 Cucumis melo HOM05D000247 ORTHO05D005467 2.6e-24 115.5 94 70.2
MELO3C029055.2 Cucumis melo HOM05D000247 ORTHO05D005467 5.4e-22 107.8 76 76.3
MELO3C035601.2 Cucumis melo HOM05D001347 ORTHO05D005467 5.4e-22 107.8 78 73.1
MELO3C029465.2 Cucumis melo HOM05D000247 ORTHO05D005467 1.6e-21 106.3 73 79.5
MELO3C031393.2 Cucumis melo HOM05D005653 ORTHO05D005467 3.5e-21 105.1 74 75.7
MELO3C034389.2 Cucumis melo HOM05D000247 ORTHO05D005467 4.6e-21 104.8 74 77.0
MELO3C010009.2 Cucumis melo HOM05D000247 ORTHO05D005467 1.7e-20 102.8 71 78.9
MELO3C032626.2 Cucumis melo HOM05D013600 ORTHO05D005467 8.6e-20 100.5 74 74.3
ClCG03G011670 Citrullus lanatus HOM05D000247 ORTHO05D005467 3.3e-19 98.6 70 77.1
Sed0000929 Sechium edule HOM05D000247 ORTHO05D005467 4.3e-19 98.2 70 75.7
CsaV3_1G044160 Cucumis sativus L. HOM05D000247 ORTHO05D005467 2.1e-18 95.9 70 75.7
Medtr7g080250 Medicago truncatula HOM05D000247 ORTHO05D005467 2.1e-18 95.9 71 73.2
TWI36G0515 Tripterygium wilfordii HOM05D000247 ORTHO05D005467 2.1e-18 95.9 70 72.9
Sed0017668 Sechium edule HOM05D000247 ORTHO05D005467 4.7e-18 94.7 70 71.4
Psat3g102640 Pisum sativum HOM05D000247 ORTHO05D005467 1.1e-17 93.6 71 73.2
TPR.G23770 Trifolium pratense HOM05D000247 ORTHO05D005467 1.1e-17 93.6 70 74.3
SalBow6G2018 Salvia bowleyana HOM05D000247 ORTHO05D005467 1.4e-17 93.2 70 70.0
Actinidia06800 Actinidia chinensis HOM05D000247 ORTHO05D005467 1.8e-17 92.8 71 70.4
Lalb_Chr01g0020531 Lupinus albus HOM05D000247 ORTHO05D005467 1.8e-17 92.8 71 71.8
Actinidia03277 Actinidia chinensis HOM05D000247 ORTHO05D005467 2.3e-17 92.4 71 69.0
Manes.13G004600 Manihot esculenta HOM05D000247 ORTHO05D005467 2.3e-17 92.4 76 69.7
Lalb_Chr03g0038711 Lupinus albus HOM05D000247 ORTHO05D005467 4.0e-17 91.7 70 72.9
arahy.Tifrunner.gnm1.ann1.2R4S5U Arachis hypogaea HOM05D000247 ORTHO05D005467 5.2e-17 91.3 76 69.7
arahy.Tifrunner.gnm1.ann1.MI3IQM Arachis hypogaea HOM05D000247 ORTHO05D005467 5.2e-17 91.3 76 69.7
Cc09_g03800 Coffea canephora HOM05D000247 ORTHO05D005467 5.2e-17 91.3 70 71.4
CSS0010092 Camellia sinensis var. sinensis HOM05D000247 ORTHO05D005467 6.8e-17 90.9 70 72.9
CiPaw.07G081500 Carya illinoinensis HOM05D000247 ORTHO05D005467 6.8e-17 90.9 71 70.4
Gohir.A13G114500 Gossypium hirsutum HOM05D000247 ORTHO05D005467 6.8e-17 90.9 74 67.6
Gohir.D13G117400 Gossypium hirsutum HOM05D000247 ORTHO05D005467 6.8e-17 90.9 74 67.6
Gorai.013G132000 Gossypium raimondii HOM05D000247 ORTHO05D005467 6.8e-17 90.9 74 67.6
Hma1.2p1_0609F.1_g188510 Hydrangea macrophylla HOM05D000247 ORTHO05D005467 6.8e-17 90.9 74 68.9
Hma1.2p1_0609F.1_g188515 Hydrangea macrophylla HOM05D000247 ORTHO05D005467 6.8e-17 90.9 74 68.9
Hma1.2p1_0609F.1_g188520 Hydrangea macrophylla HOM05D000247 ORTHO05D005467 6.8e-17 90.9 74 68.9
Phvul.008G053300 Phaseolus vulgaris HOM05D000247 ORTHO05D005467 6.8e-17 90.9 70 72.9
MBI11_g00130_MAGBIO Magnolia biondii HOM05D000247 ORTHO05D005467 8.9e-17 90.5 71 70.4
Thecc.05G192000 Theobroma cacao HOM05D000247 ORTHO05D005467 8.9e-17 90.5 71 70.4
TWI75G1857 Tripterygium wilfordii HOM05D000247 ORTHO05D005467 8.9e-17 90.5 71 67.6
vmacro19615 Vaccinium macrocarpon HOM05D000247 ORTHO05D005467 8.9e-17 90.5 71 69.0
Atru.chr12.1750 Acer truncatum HOM05D000247 ORTHO05D005467 1.2e-16 90.1 71 69.0
Cfa006252 Carpinus fangiana HOM05D000247 ORTHO05D005467 1.2e-16 90.1 71 70.4
Haze_04582 Corylus avellana HOM05D000247 ORTHO05D005467 1.2e-16 90.1 71 70.4
Lj1g0021551 Lotus japonicus HOM05D000247 ORTHO05D005467 1.2e-16 90.1 71 69.0
MD12G1263900 Malus domestica HOM05D000247 ORTHO05D005467 1.2e-16 90.1 70 71.4
Glyma.18G243200 Glycine max HOM05D000247 ORTHO05D005467 1.5e-16 89.7 70 71.4
Cpa.g.sc39.18 Carica papaya HOM05D000247 ORTHO05D005467 2.0e-16 89.4 71 69.0
PGR031G3232 Punica granatum HOM05D000247 ORTHO05D005467 2.0e-16 89.4 70 70.0
SGA_v2.0_scaffold122G33187 Striga asiatica HOM05D000247 ORTHO05D005467 2.0e-16 89.4 71 70.4
Duzib177G0105 Durio zibethinus HOM05D000247 ORTHO05D005467 2.6e-16 89.0 71 69.0
Migut.F01866 Erythranthe guttata HOM05D000247 ORTHO05D005467 2.6e-16 89.0 70 70.0
Eucgr.H01629 Eucalyptus grandis HOM05D000247 ORTHO05D005467 2.6e-16 89.0 71 69.0
Prupe.6G362500 Prunus persica HOM05D000247 ORTHO05D005467 2.6e-16 89.0 70 70.0
CDE05G1927 Ceratophyllum demersum HOM05D000247 ORTHO05D005467 3.4e-16 88.6 70 65.7
Rhsim05G0167700 Rhododendron simsii HOM05D000247 ORTHO05D005467 3.4e-16 88.6 71 67.6
AL3G12140 Arabidopsis lyrata HOM05D000247 ORTHO05D005467 4.4e-16 88.2 75 64.0
CANSAT54G0629 Cannabis sativa HOM05D000247 ORTHO05D005467 4.4e-16 88.2 71 70.4
Dinv15375 Davidia involucrata HOM05D000247 ORTHO05D005467 4.4e-16 88.2 71 67.6
Thhalv10021615m.g Eutrema salsugineum HOM05D000247 ORTHO05D005467 4.4e-16 88.2 75 64.0
VMungo1383G3087 Vigna mungo HOM05D000247 ORTHO05D005467 4.4e-16 88.2 69 71.0
GSVIVG01019070001 Vitis vinifera HOM05D000247 ORTHO05D005467 4.4e-16 88.2 71 69.0
ATR0824G128 Amborella trichopoda HOM05D000247 ORTHO05D005467 5.8e-16 87.8 71 67.6
HanXRQChr17g0556061 Helianthus annuus HOM05D000247 ORTHO05D005467 5.8e-16 87.8 70 70.0
Oeu034780.1 Olea europaea HOM05D000247 ORTHO05D005467 5.8e-16 87.8 70 68.6
Sp3g01760 Schrenkiella parvula HOM05D000247 ORTHO05D005467 5.8e-16 87.8 75 64.0
CDE05G1910 Ceratophyllum demersum HOM05D000247 ORTHO05D005467 7.5e-16 87.4 70 65.7
COL.COLO4_33466 Corchorus olitorius HOM05D000247 ORTHO05D005467 7.5e-16 87.4 71 69.0
MD04G1246200 Malus domestica HOM05D000247 ORTHO05D005467 7.5e-16 87.4 70 70.0
AT3G02730 Arabidopsis thaliana HOM05D000247 ORTHO05D005467 1.3e-15 86.7 71 67.6
Carub.0003s0183 Capsella rubella HOM05D000247 ORTHO05D005467 1.3e-15 86.7 71 67.6
FvH4_6g00380 Fragaria vesca HOM05D000247 ORTHO05D005467 1.3e-15 86.7 71 67.6
FAN02G4262 Fragaria x ananassa HOM05D000247 ORTHO05D005467 1.3e-15 86.7 71 67.6
FAN09G0601 Fragaria x ananassa HOM05D000247 ORTHO05D005467 1.3e-15 86.7 71 67.6
FAN14G3072 Fragaria x ananassa HOM05D000247 ORTHO05D005467 1.3e-15 86.7 71 67.6
Nn3g20156 Nelumbo nucifera HOM05D000247 ORTHO05D005467 1.3e-15 86.7 74 62.2
RcHm_v2.0_Chr3g0447721 Rosa chinensis HOM05D000247 ORTHO05D005467 1.7e-15 86.3 71 67.6
Aqoxy5G00017 Aquilegia oxysepala HOM05D000247 ORTHO05D005467 2.2e-15 85.9 74 63.5
Eucgr.B01424 Eucalyptus grandis HOM05D000247 ORTHO05D005467 2.2e-15 85.9 70 68.6
PGR119G0647 Punica granatum HOM05D000247 ORTHO05D005467 2.2e-15 85.9 71 64.8
Rhsim10G0057900 Rhododendron simsii HOM05D000247 ORTHO05D005467 2.2e-15 85.9 71 66.2
SMO203G0060 Selaginella moellendorffii HOM05D000247 ORTHO05D005467 2.2e-15 85.9 72 62.5
Zm00001eb418040 Zea mays HOM05D000247 ORTHO05D005467 2.9e-15 85.5 71 69.0
Migut.F02110 Erythranthe guttata HOM05D000247 ORTHO05D005467 3.7e-15 85.1 75 62.7
Lsat_1_v5_gn_2_17480 Lactuca sativa HOM05D000247 ORTHO05D005467 3.7e-15 85.1 72 66.7
Aa31LG5G13200 Aethionema arabicum HOM05D000247 ORTHO05D005467 4.9e-15 84.7 70 65.7
AT5G16400 Arabidopsis thaliana HOM05D000247 ORTHO05D005467 4.9e-15 84.7 70 65.7
Solyc05g056300.4 Solanum lycopersicum HOM05D000247 ORTHO05D005467 4.9e-15 84.7 70 67.1
Sopen05g034690 Solanum pennellii HOM05D000247 ORTHO05D005467 4.9e-15 84.7 70 67.1
PGSC0003DMG400023333 Solanum tuberosum HOM05D000247 ORTHO05D005467 4.9e-15 84.7 70 67.1
BraA01t04621Z Brassica rapa HOM05D000247 ORTHO05D005467 8.3e-15 84.0 71 64.8
CAN.G1921.8 Capsicum annuum HOM05D000247 ORTHO05D005467 8.3e-15 84.0 70 67.1
BNapus_Darmor_BZH_scaffold_99p00230 Brassica napus HOM05D000247 ORTHO05D005467 1.1e-14 83.6 71 64.8
ECA232G0920 Erigeron canadensis HOM05D000247 ORTHO05D005467 1.1e-14 83.6 70 65.7
Thhalv10014778m.g Eutrema salsugineum HOM05D000247 ORTHO05D005467 1.1e-14 83.6 70 64.3
Potri.019G054800 Populus trichocarpa HOM05D000247 ORTHO05D005467 1.1e-14 83.6 71 66.2
HPP92_000446 Vanilla planifolia HOM05D000247 ORTHO05D005467 1.1e-14 83.6 70 67.1
AL6G27330 Arabidopsis lyrata HOM05D000247 ORTHO05D005467 1.4e-14 83.2 70 64.3
Carub.0006s1459 Capsella rubella HOM05D000247 ORTHO05D005467 1.4e-14 83.2 70 64.3
FAN05G0844 Fragaria x ananassa HOM05D000247 ORTHO05D005467 1.4e-14 83.2 71 64.8
Sc09g0001410 Simmondsia chinensis HOM05D000247 ORTHO05D005467 1.4e-14 83.2 74 62.2
Ciclev10013409m.g Citrus clementina HOM05D000247 ORTHO05D005467 1.9e-14 82.8 70 65.7
Sabra19G0063700 Salix brachista HOM05D000247 ORTHO05D005467 1.9e-14 82.8 70 67.1
CARHR196860 Cardamine hirsuta HOM05D000247 ORTHO05D005467 2.4e-14 82.4 70 64.3
PSO170G0238 Papaver somniferum HOM05D000247 ORTHO05D005467 2.4e-14 82.4 70 64.3
Lsat_1_v5_gn_0_10780 Lactuca sativa HOM05D000247 ORTHO05D005467 3.2e-14 82.0 70 64.3
Os01g0913000 Oryza sativa ssp. japonica HOM05D000247 ORTHO05D005467 3.2e-14 82.0 68 67.6
Peaxi162Scf00353g00731 Petunia axillaris HOM05D000247 ORTHO05D005467 3.2e-14 82.0 70 64.3
BolC1t05881H Brassica oleracea HOM05D000247 ORTHO05D005467 4.1e-14 81.6 71 63.4
SalBow1G5091 Salvia bowleyana HOM05D000247 ORTHO05D005467 4.1e-14 81.6 70 64.3
Zm00001eb354270 Zea mays HOM05D000247 ORTHO05D005467 4.1e-14 81.6 70 67.1
HanXRQChr08g0220871 Helianthus annuus HOM05D000247 ORTHO05D005467 5.4e-14 81.3 70 65.7
Nitab4.5_0000582g0020 Nicotiana tabacum HOM05D000247 ORTHO05D005467 5.4e-14 81.3 69 65.2
Nitab4.5_0013647g0010 Nicotiana tabacum HOM05D000247 ORTHO05D005467 5.4e-14 81.3 69 65.2
THA.LOC104820923 Tarenaya hassleriana HOM05D000247 ORTHO05D005467 5.4e-14 81.3 76 61.8
MSTRG.9245 Avicennia marina HOM05D000247 ORTHO05D005467 7.0e-14 80.9 70 64.3
Ah.06g195420 Amaranthus hybridus HOM05D000247 ORTHO05D005467 9.2e-14 80.5 71 62.0
A05p44370 Brassica napus HOM05D000247 ORTHO05D005467 9.2e-14 80.5 71 60.6
C09p75870 Brassica napus HOM05D000247 ORTHO05D005467 9.2e-14 80.5 71 60.6
BolC5t35070H Brassica oleracea HOM05D000247 ORTHO05D005467 9.2e-14 80.5 71 60.6
BraA06t23293Z Brassica rapa HOM05D000247 ORTHO05D005467 9.2e-14 80.5 71 60.6
MELO3C029053.2 Cucumis melo HOM05D000247 ORTHO05D005467 9.2e-14 80.5 44 90.9
MELO3C034498.2 Cucumis melo HOM05D000247 ORTHO05D005467 9.2e-14 80.5 44 90.9
Sp6g27770 Schrenkiella parvula HOM05D000247 ORTHO05D005467 9.2e-14 80.5 76 59.2
THA.LOC104802956 Tarenaya hassleriana HOM05D000247 ORTHO05D005467 9.2e-14 80.5 70 62.9
A02p03510 Brassica napus HOM05D000247 ORTHO05D005467 1.2e-13 80.1 70 60.0
MELO3C028554.2 Cucumis melo HOM05D000247 ORTHO05D005467 1.2e-13 80.1 40 100.0
unitig_62.g23541 Utricularia gibba HOM05D000247 ORTHO05D005467 1.6e-13 79.7 76 59.2
CDE06G0663 Ceratophyllum demersum HOM05D000247 ORTHO05D005467 2.0e-13 79.3 71 62.0
PSO357G0377 Papaver somniferum HOM05D000247 ORTHO05D005467 2.0e-13 79.3 70 61.4
Ah.04g159050 Amaranthus hybridus HOM05D000247 ORTHO05D005467 2.7e-13 79.0 71 62.0
EL10Ac4g09997 Beta vulgaris HOM05D000247 ORTHO05D005467 2.7e-13 79.0 69 62.3
Lj1C578G15 Lonicera japonica HOM05D000247 ORTHO05D005467 2.7e-13 79.0 71 62.0
Oeu009736.1 Olea europaea HOM05D000247 ORTHO05D005467 2.7e-13 79.0 69 62.3
BraA02t05322Z Brassica rapa HOM05D000247 ORTHO05D005467 3.5e-13 78.6 70 58.6
BcaC05g30514 Brassica carinata HOM05D000247 ORTHO05D005467 4.6e-13 78.2 71 59.2
C02p08310 Brassica napus HOM05D000247 ORTHO05D005467 4.6e-13 78.2 70 58.6
BolC2t06751H Brassica oleracea HOM05D000247 ORTHO05D005467 4.6e-13 78.2 70 58.6
AUR62000296 Chenopodium quinoa HOM05D000247 ORTHO05D005467 1.3e-12 76.6 71 59.2
AUR62006642 Chenopodium quinoa HOM05D000247 ORTHO05D005467 1.3e-12 76.6 71 59.2
unitig_52.g17512 Utricularia gibba HOM05D000247 ORTHO05D005467 1.3e-12 76.6 76 56.6
CDE02G0703 Ceratophyllum demersum HOM05D000247 ORTHO05D005467 5.0e-12 74.7 71 57.7
Mapoly0040s0138 Marchantia polymorpha HOM05D000247 ORTHO05D005467 7.3e-11 70.9 68 57.4
Pp3c4_3890 Physcomitrium patens HOM05D000247 ORTHO05D005467 7.3e-11 70.9 70 54.3
Hund07358 Selenicereus undatus HOM05D000247 ORTHO05D005467 2.1e-10 69.3 70 55.7
BcaC03g15161 Brassica carinata HOM05D000247 ORTHO05D005467 9.9e-08 60.5 39 74.4
ECA238G1267 Erigeron canadensis HOM05D000261 ORTHO05D000566 3.2e-06 55.5 64 50.0


User provided reference genes

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