Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C028839.2 Cucumis melo HOM05D005209 ORTHO05D006188 1.1e-15 85.5 44 100.0
MELO3C018315.2 Cucumis melo HOM05D005209 ORTHO05D006188 3.4e-12 73.9 44 90.9
MELO3C029418.2 Cucumis melo HOM05D005209 ORTHO05D006188 3.4e-12 73.9 44 86.4
Lj7A7G35 Lonicera japonica HOM05D005209 ORTHO05D006188 2.4e-10 67.8 41 87.8
ATR0691G275 Amborella trichopoda HOM05D005209 ORTHO05D006188 7.0e-10 66.2 41 87.8
CANSAT64G0740 Cannabis sativa HOM05D005209 ORTHO05D006188 7.0e-10 66.2 41 87.8
Cfa007992 Carpinus fangiana HOM05D005209 ORTHO05D006188 7.0e-10 66.2 41 87.8
Haze_14094 Corylus avellana HOM05D005209 ORTHO05D006188 7.0e-10 66.2 41 87.8
Nn3g17615 Nelumbo nucifera HOM05D005209 ORTHO05D006188 7.0e-10 66.2 41 87.8
PSO017G0176 Papaver somniferum HOM05D005209 ORTHO05D006188 7.0e-10 66.2 41 87.8
PSO478G2513 Papaver somniferum HOM05D005209 ORTHO05D006188 7.0e-10 66.2 41 87.8
Pp3c5_10620 Physcomitrium patens HOM05D005209 ORTHO05D006188 7.0e-10 66.2 41 87.8
QL06p007181 Quercus lobata HOM05D005209 ORTHO05D006188 7.0e-10 66.2 41 87.8
TAR374G0982 Trochodendron aralioides HOM05D005209 ORTHO05D006188 7.0e-10 66.2 41 87.8
TAR622G1226 Trochodendron aralioides HOM05D005209 ORTHO05D006188 7.0e-10 66.2 41 87.8
Lj4A128G72 Lonicera japonica HOM05D005209 ORTHO05D006188 1.2e-09 65.5 41 85.4
TWI34G0252 Tripterygium wilfordii HOM05D005209 ORTHO05D006188 1.2e-09 65.5 41 85.4
GSVIVG01036485001 Vitis vinifera HOM05D005209 ORTHO05D006188 1.2e-09 65.5 41 85.4
Actinidia17624 Actinidia chinensis HOM05D005209 ORTHO05D006188 1.6e-09 65.1 41 85.4
MSTRG.16420 Avicennia marina HOM05D005209 ORTHO05D006188 1.6e-09 65.1 41 85.4
CSS0008299 Camellia sinensis var. sinensis HOM05D005209 ORTHO05D006188 1.6e-09 65.1 41 85.4
Dinv33899 Davidia involucrata HOM05D005209 ORTHO05D006188 1.6e-09 65.1 41 85.4
Migut.B00873 Erythranthe guttata HOM05D005209 ORTHO05D006188 1.6e-09 65.1 41 85.4
Hma1.2p1_0588F.1_g184490 Hydrangea macrophylla HOM05D005209 ORTHO05D006188 1.6e-09 65.1 41 85.4
Lju237A1T74 Lonicera japonica HOM05D005209 ORTHO05D006188 1.6e-09 65.1 41 85.4
Oeu061923.1 Olea europaea HOM05D005209 ORTHO05D006188 1.6e-09 65.1 41 85.4
PGR004G1897 Punica granatum HOM05D005209 ORTHO05D006188 1.6e-09 65.1 41 85.4
Rhsim08G0080900 Rhododendron simsii HOM05D005209 ORTHO05D006188 1.6e-09 65.1 41 85.4
SGA_v2.0_scaffold279G46783 Striga asiatica HOM05D005209 ORTHO05D006188 1.6e-09 65.1 41 85.4
vmacro18093 Vaccinium macrocarpon HOM05D005209 ORTHO05D006188 1.6e-09 65.1 41 85.4
arahy.Tifrunner.gnm1.ann1.M8ZBV6 Arachis hypogaea HOM05D005209 ORTHO05D006188 2.0e-09 64.7 41 85.4
arahy.Tifrunner.gnm1.ann1.TP5H97 Arachis hypogaea HOM05D005209 ORTHO05D006188 2.0e-09 64.7 41 85.4
CiPaw.04G044000 Carya illinoinensis HOM05D005209 ORTHO05D006188 2.0e-09 64.7 41 85.4
Ca_26512_v3 Cicer arietinum L. HOM05D005209 ORTHO05D006188 2.0e-09 64.7 41 85.4
ClCG04G009000 Citrullus lanatus HOM05D005209 ORTHO05D006188 2.0e-09 64.7 41 85.4
MELO3C014242.2 Cucumis melo HOM05D005209 ORTHO05D006188 2.0e-09 64.7 41 85.4
CsaV3_6G039510 Cucumis sativus L. HOM05D005209 ORTHO05D006188 2.0e-09 64.7 41 85.4
Glyma.13G049900 Glycine max HOM05D005209 ORTHO05D006188 2.0e-09 64.7 41 85.4
Glyma.19G040100 Glycine max HOM05D005209 ORTHO05D006188 2.0e-09 64.7 41 85.4
Lj2g0010421 Lotus japonicus HOM05D005209 ORTHO05D006188 2.0e-09 64.7 41 85.4
Lalb_Chr10g0092431 Lupinus albus HOM05D005209 ORTHO05D006188 2.0e-09 64.7 41 85.4
Mapoly0019s0033 Marchantia polymorpha HOM05D005209 ORTHO05D006188 2.0e-09 64.7 41 85.4
Medtr6g016590 Medicago truncatula HOM05D005209 ORTHO05D006188 2.0e-09 64.7 41 85.4
Phvul.004G047400 Phaseolus vulgaris HOM05D005209 ORTHO05D006188 2.0e-09 64.7 41 85.4
Psat1g063840 Pisum sativum HOM05D005209 ORTHO05D006188 2.0e-09 64.7 41 85.4
Sed0011768 Sechium edule HOM05D005209 ORTHO05D006188 2.0e-09 64.7 41 85.4
TPR.G27151 Trifolium pratense HOM05D005209 ORTHO05D006188 2.0e-09 64.7 41 85.4
VMungo0464G1508 Vigna mungo HOM05D005209 ORTHO05D006188 2.0e-09 64.7 41 85.4
SalBow5G4773 Salvia bowleyana HOM05D005209 ORTHO05D006188 2.7e-09 64.3 41 82.9
Cpa.g.sc179.54 Carica papaya HOM05D005209 ORTHO05D006188 3.5e-09 63.9 41 85.4
CiPaw.03G064100 Carya illinoinensis HOM05D005209 ORTHO05D006188 3.5e-09 63.9 41 85.4
Cc02_g35740 Coffea canephora HOM05D005209 ORTHO05D006188 3.5e-09 63.9 41 82.9
COL.COLO4_22346 Corchorus olitorius HOM05D005209 ORTHO05D006188 3.5e-09 63.9 41 85.4
Duzib133G0011 Durio zibethinus HOM05D005209 ORTHO05D006188 3.5e-09 63.9 41 85.4
ECA238G3898 Erigeron canadensis HOM05D005209 ORTHO05D006188 3.5e-09 63.9 38 89.5
FvH4_6g45750 Fragaria vesca HOM05D005209 ORTHO05D006188 3.5e-09 63.9 41 85.4
FAN02G3885 Fragaria x ananassa HOM05D005209 ORTHO05D006188 3.5e-09 63.9 41 85.4
FAN05G1817 Fragaria x ananassa HOM05D005209 ORTHO05D006188 3.5e-09 63.9 41 85.4
FAN09G2619 Fragaria x ananassa HOM05D005209 ORTHO05D006188 3.5e-09 63.9 41 85.4
FAN14G1352 Fragaria x ananassa HOM05D005209 ORTHO05D006188 3.5e-09 63.9 41 85.4
Gohir.A08G035500 Gossypium hirsutum HOM05D005209 ORTHO05D006188 3.5e-09 63.9 41 85.4
Gohir.D08G046200 Gossypium hirsutum HOM05D005209 ORTHO05D006188 3.5e-09 63.9 41 85.4
Gorai.004G045400 Gossypium raimondii HOM05D005209 ORTHO05D006188 3.5e-09 63.9 41 85.4
HanXRQChr14g0448041 Helianthus annuus HOM05D005209 ORTHO05D006188 3.5e-09 63.9 38 89.5
Lalb_Chr04g0258231 Lupinus albus HOM05D005209 ORTHO05D006188 3.5e-09 63.9 38 89.5
MD09G1080000 Malus domestica HOM05D005209 ORTHO05D006188 3.5e-09 63.9 41 85.4
MD17G1070500 Malus domestica HOM05D005209 ORTHO05D006188 3.5e-09 63.9 41 85.4
Pp3c16_15440 Physcomitrium patens HOM05D005209 ORTHO05D006188 3.5e-09 63.9 38 89.5
Potri.004G106700 Populus trichocarpa HOM05D005209 ORTHO05D006188 3.5e-09 63.9 41 85.4
Prupe.3G243700 Prunus persica HOM05D005209 ORTHO05D006188 3.5e-09 63.9 41 85.4
RcHm_v2.0_Chr2g0163941 Rosa chinensis HOM05D005209 ORTHO05D006188 3.5e-09 63.9 41 85.4
Sabra04G0075400 Salix brachista HOM05D005209 ORTHO05D006188 3.5e-09 63.9 41 85.4
Sabra17G0091500 Salix brachista HOM05D005209 ORTHO05D006188 3.5e-09 63.9 41 85.4
Thecc.04G145600 Theobroma cacao HOM05D005209 ORTHO05D006188 3.5e-09 63.9 41 85.4
CSS0033996 Camellia sinensis var. sinensis HOM05D005209 ORTHO05D006188 4.5e-09 63.5 41 82.9
QL02p054311 Quercus lobata HOM05D005209 ORTHO05D006188 4.5e-09 63.5 41 85.4
Atru.chr8.744 Acer truncatum HOM05D005209 ORTHO05D006188 5.9e-09 63.2 41 82.9
Ah.10g037440 Amaranthus hybridus HOM05D005209 ORTHO05D006188 5.9e-09 63.2 38 86.8
Ah.16g102120 Amaranthus hybridus HOM05D005209 ORTHO05D006188 5.9e-09 63.2 38 86.8
Aqoxy3G00620 Aquilegia oxysepala HOM05D005209 ORTHO05D006188 5.9e-09 63.2 41 85.4
AUR62014565 Chenopodium quinoa HOM05D005209 ORTHO05D006188 5.9e-09 63.2 38 86.8
AUR62039394 Chenopodium quinoa HOM05D005209 ORTHO05D006188 5.9e-09 63.2 38 86.8
Ciclev10011814m.g Citrus clementina HOM05D005209 ORTHO05D006188 5.9e-09 63.2 41 82.9
Hund13748 Selenicereus undatus HOM05D005209 ORTHO05D006188 5.9e-09 63.2 38 86.8
CAN.G1374.22 Capsicum annuum HOM05D005209 ORTHO05D006188 7.7e-09 62.8 41 80.5
CDE04G1748 Ceratophyllum demersum HOM05D005209 ORTHO05D006188 7.7e-09 62.8 38 86.8
Nitab4.5_0001931g0070 Nicotiana tabacum HOM05D005209 ORTHO05D006188 7.7e-09 62.8 41 80.5
Nitab4.5_0008432g0050 Nicotiana tabacum HOM05D005209 ORTHO05D006188 7.7e-09 62.8 41 80.5
Os08g0412600 Oryza sativa ssp. japonica HOM05D005209 ORTHO05D006188 7.7e-09 62.8 37 89.2
Peaxi162Scf00357g00219 Petunia axillaris HOM05D005209 ORTHO05D006188 7.7e-09 62.8 41 80.5
Potri.017G109000 Populus trichocarpa HOM05D005209 ORTHO05D006188 7.7e-09 62.8 39 84.6
SMO358G0703 Selaginella moellendorffii HOM05D005209 ORTHO05D006188 7.7e-09 62.8 41 82.9
SEGI_00163 Sequoiadendron giganteum HOM05D005209 ORTHO05D006188 7.7e-09 62.8 41 82.9
Solyc01g101090.3 Solanum lycopersicum HOM05D005209 ORTHO05D006188 7.7e-09 62.8 41 80.5
Sopen01g044540 Solanum pennellii HOM05D005209 ORTHO05D006188 7.7e-09 62.8 41 80.5
PGSC0003DMG400018291 Solanum tuberosum HOM05D005209 ORTHO05D006188 7.7e-09 62.8 41 80.5
THA.LOC104820961 Tarenaya hassleriana HOM05D005209 ORTHO05D006188 7.7e-09 62.8 37 89.2
HPP92_027234 Vanilla planifolia HOM05D005209 ORTHO05D006188 7.7e-09 62.8 37 89.2
Zm00001eb061500 Zea mays HOM05D005209 ORTHO05D006188 7.7e-09 62.8 37 89.2
Duzib138G1525 Durio zibethinus HOM05D005209 ORTHO05D006188 1.0e-08 62.4 37 86.5
Aa31LG5G12960 Aethionema arabicum HOM05D005209 ORTHO05D006188 1.3e-08 62.0 37 86.5
AL3G11770 Arabidopsis lyrata HOM05D005209 ORTHO05D006188 1.3e-08 62.0 37 86.5
AT3G02460 Arabidopsis thaliana HOM05D005209 ORTHO05D006188 1.3e-08 62.0 37 86.5
BcaC01g04447 Brassica carinata HOM05D005209 ORTHO05D006188 1.3e-08 62.0 37 86.5
BcaC01g04552 Brassica carinata HOM05D005209 ORTHO05D006188 1.3e-08 62.0 37 86.5
A03p32930 Brassica napus HOM05D005209 ORTHO05D006188 1.3e-08 62.0 37 86.5
C03p40050 Brassica napus HOM05D005209 ORTHO05D006188 1.3e-08 62.0 37 86.5
BolC3t16270H Brassica oleracea HOM05D005209 ORTHO05D006188 1.3e-08 62.0 37 86.5
BraA03t12461Z Brassica rapa HOM05D005209 ORTHO05D006188 1.3e-08 62.0 37 86.5
Carub.0003s0155 Capsella rubella HOM05D005209 ORTHO05D006188 1.3e-08 62.0 37 86.5
CARHR076430 Cardamine hirsuta HOM05D005209 ORTHO05D006188 1.3e-08 62.0 37 86.5
Thhalv10013946m.g Eutrema salsugineum HOM05D005209 ORTHO05D006188 1.3e-08 62.0 41 80.5
Thhalv10021030m.g Eutrema salsugineum HOM05D005209 ORTHO05D006188 1.3e-08 62.0 37 86.5
Manes.02G063700 Manihot esculenta HOM05D005209 ORTHO05D006188 1.3e-08 62.0 37 86.5
Aa31LG11G13670 Aethionema arabicum HOM05D005209 ORTHO05D006188 1.7e-08 61.6 37 86.5
Lsat_1_v5_gn_2_86181 Lactuca sativa HOM05D005209 ORTHO05D006188 1.7e-08 61.6 38 84.2
Lsat_1_v5_gn_5_78880 Lactuca sativa HOM05D002393 ORTHO05D006188 1.7e-08 61.6 38 84.2
Manes.01G106800 Manihot esculenta HOM05D005209 ORTHO05D006188 1.7e-08 61.6 37 86.5
Sc11g0008040 Simmondsia chinensis HOM05D005209 ORTHO05D006188 1.7e-08 61.6 38 84.2
CBR_g16026 Chara braunii HOM05D005209 ORTHO05D006188 2.2e-08 61.2 41 80.5
Eucgr.I02101 Eucalyptus grandis HOM05D005209 ORTHO05D006188 2.9e-08 60.8 38 81.6
MBI15_g34592_MAGBIO Magnolia biondii HOM05D005209 ORTHO05D006188 2.9e-08 60.8 41 82.9
MBI15_g38436_MAGBIO Magnolia biondii HOM05D005209 ORTHO05D006188 2.9e-08 60.8 41 82.9
Sp6g28180 Schrenkiella parvula HOM05D005209 ORTHO05D006188 2.9e-08 60.8 37 83.8
unitig_26.g9698 Utricularia gibba HOM05D005209 ORTHO05D006188 2.9e-08 60.8 38 84.2
EL10Ac2g04651 Beta vulgaris HOM05D005209 ORTHO05D006188 3.8e-08 60.5 38 84.2
BcaC03g18460 Brassica carinata HOM05D005209 ORTHO05D006188 3.8e-08 60.5 37 83.8
BcaNung02214 Brassica carinata HOM05D005209 ORTHO05D006188 3.8e-08 60.5 37 83.8
A02p03310 Brassica napus HOM05D005209 ORTHO05D006188 3.8e-08 60.5 37 83.8
C02p08070 Brassica napus HOM05D005209 ORTHO05D006188 3.8e-08 60.5 37 83.8
BolC2t06729H Brassica oleracea HOM05D005209 ORTHO05D006188 3.8e-08 60.5 37 83.8
BraA02t05301Z Brassica rapa HOM05D005209 ORTHO05D006188 3.8e-08 60.5 37 83.8
Carub.0006s1412 Capsella rubella HOM05D005209 ORTHO05D006188 3.8e-08 60.5 37 83.8
CARHR197380 Cardamine hirsuta HOM05D005209 ORTHO05D006188 3.8e-08 60.5 37 83.8
AL6G26810 Arabidopsis lyrata HOM05D005209 ORTHO05D006188 8.5e-08 59.3 37 81.1
AT5G15930 Arabidopsis thaliana HOM05D005209 ORTHO05D006188 8.5e-08 59.3 37 81.1
DCAR_007532 Daucus carota HOM05D005209 ORTHO05D006188 1.1e-07 58.9 41 78.0
AagrBONN_evm.TU.Sc2ySwM_228.5664 Anthoceros agrestis HOM05D005209 ORTHO05D006188 2.5e-07 57.8 41 78.0
PRCOL_00003246 Prasinoderma coloniale HOM05D005209 ORTHO05D006188 5.5e-07 56.6 38 76.3


User provided reference genes

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