Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C000334.2 Cucumis melo HOM05D000806 ORTHO05D002320 4.4e-80 301.2 151 100.0
MELO3C028653.2 Cucumis melo HOM05D000806 ORTHO05D002320 4.4e-80 301.2 151 100.0
Sed0026664 Sechium edule HOM05D000806 ORTHO05D002320 7.6e-72 273.9 151 91.4
MELO3C034228.2 Cucumis melo HOM05D000806 ORTHO05D002320 2.4e-57 225.7 132 88.6
Sed0009930 Sechium edule HOM05D000806 ORTHO05D002320 1.5e-56 223.0 144 83.3
Hma1.2p1_0355F.1_g133926 Hydrangea macrophylla HOM05D000806 ORTHO05D002320 4.3e-51 204.9 158 70.9
MELO3C029533.2 Cucumis melo HOM05D000806 ORTHO05D002320 1.8e-49 199.5 111 88.3
PGR111G0026 Punica granatum HOM05D000806 ORTHO05D002320 1.0e-47 193.7 158 69.0
CSS0050017 Camellia sinensis var. sinensis HOM05D000806 ORTHO05D002320 3.5e-45 185.3 158 67.7
CAN.G1478.9 Capsicum annuum HOM05D000806 ORTHO05D002320 2.1e-42 176.0 154 63.6
CAN.G219.28 Capsicum annuum HOM05D001133 ORTHO05D000941 2.1e-42 176.0 154 63.6
Peaxi162Scf00021g00818 Petunia axillaris HOM05D000806 ORTHO05D002320 4.8e-42 174.9 154 63.0
CAN.G1183.3 Capsicum annuum HOM05D000806 ORTHO05D002320 6.3e-42 174.5 154 63.0
RcHm_v2.0_Chr5g0042991 Rosa chinensis HOM05D000806 ORTHO05D002320 4.5e-40 168.3 160 59.4
RcHm_v2.0_CPg0502101 Rosa chinensis HOM05D000806 ORTHO05D002320 5.9e-40 167.9 160 58.8
Gohir.D01G102333 Gossypium hirsutum HOM05D000806 ORTHO05D002320 2.9e-39 165.6 161 60.2
Gohir.1Z049999 Gossypium hirsutum HOM05D000806 ORTHO05D002320 5.0e-39 164.9 161 60.9
MELO3C031612.2 Cucumis melo HOM05D000806 ORTHO05D002320 3.2e-38 162.2 124 71.8
Solyc00g500065.1 Solanum lycopersicum HOM05D000806 ORTHO05D002320 5.5e-38 161.4 157 59.2
Nn010s41447 Nelumbo nucifera HOM05D000806 ORTHO05D002320 2.7e-37 159.1 154 61.7
PSO548G0072 Papaver somniferum HOM05D000806 ORTHO05D002320 3.6e-37 158.7 158 58.9
Nn010s41432 Nelumbo nucifera HOM05D000806 ORTHO05D002320 4.6e-37 158.3 158 60.1
Potri.013G162600 Populus trichocarpa HOM05D000806 ORTHO05D002320 1.0e-36 157.1 162 58.6
Eucgr.I02537 Eucalyptus grandis HOM05D000806 ORTHO05D002320 2.3e-36 156.0 158 60.8
DCAR_032493 Daucus carota HOM05D000806 ORTHO05D002320 1.9e-35 152.9 158 58.2
Ah.10g027380 Amaranthus hybridus HOM05D000806 ORTHO05D007429 5.7e-35 151.4 159 56.0
Ah.10g027510 Amaranthus hybridus HOM05D000806 ORTHO05D002324 5.7e-35 151.4 159 56.0
Ah.10g027920 Amaranthus hybridus HOM05D000806 ORTHO05D002324 5.7e-35 151.4 159 56.0
Ah.10g028630 Amaranthus hybridus HOM05D000806 ORTHO05D002324 5.7e-35 151.4 159 56.0
HanXRQChr00c0702g0576831 Helianthus annuus HOM05D000806 ORTHO05D002320 7.4e-35 151.0 158 58.2
HanXRQChr01g0020371 Helianthus annuus HOM05D000806 ORTHO05D002320 7.4e-35 151.0 158 58.2
HanXRQChr02g0041561 Helianthus annuus HOM05D000806 ORTHO05D002320 7.4e-35 151.0 158 58.2
HanXRQChr02g0044911 Helianthus annuus HOM05D000806 ORTHO05D002320 7.4e-35 151.0 158 58.2
HanXRQChr08g0210341 Helianthus annuus HOM05D000806 ORTHO05D002320 7.4e-35 151.0 158 58.2
HanXRQChr10g0289251 Helianthus annuus HOM05D000806 ORTHO05D002320 7.4e-35 151.0 158 58.2
HanXRQChr11g0326811 Helianthus annuus HOM05D000806 ORTHO05D002320 7.4e-35 151.0 158 58.2
HanXRQCPg0580021 Helianthus annuus HOM05D000806 ORTHO05D002320 7.4e-35 151.0 158 58.2
HanXRQChr13g0413531 Helianthus annuus HOM05D000806 ORTHO05D002320 2.2e-34 149.4 158 57.6
arahy.Tifrunner.gnm1.ann1.0T2FMW Arachis hypogaea HOM05D000445 ORTHO05D000314 2.8e-34 149.1 161 57.1
LjContig00318g0000728 Lotus japonicus HOM05D000806 ORTHO05D002320 1.4e-33 146.7 159 56.0
EL10As15g24118 Beta vulgaris HOM05D001133 ORTHO05D000941 4.1e-33 145.2 160 56.9
EL10As15g24119 Beta vulgaris HOM05D000806 ORTHO05D002320 4.1e-33 145.2 160 56.9
CAN.G1012.4 Capsicum annuum HOM05D000806 ORTHO05D002320 6.9e-33 144.4 130 61.5
Thhalv10011034m.g Eutrema salsugineum HOM05D000806 ORTHO05D002320 5.9e-32 141.4 159 56.6
BolSC29t60465H Brassica oleracea HOM05D000806 ORTHO05D002320 7.7e-32 141.0 159 55.3
BolSC47t61099H Brassica oleracea HOM05D000806 ORTHO05D002320 7.7e-32 141.0 159 55.3
C09p40220 Brassica napus HOM05D000806 ORTHO05D002320 1.7e-31 139.8 159 55.3
BraA06t25423Z Brassica rapa HOM05D000806 ORTHO05D002320 1.7e-31 139.8 159 55.3
BraSC140t45575Z Brassica rapa HOM05D000806 ORTHO05D007429 1.7e-31 139.8 159 55.3
CAN.G1.10 Capsicum annuum HOM05D000806 ORTHO05D002320 1.7e-31 139.8 127 62.2
ATCG00500 Arabidopsis thaliana HOM05D000806 ORTHO05D002320 2.9e-31 139.0 162 54.3
CARHR282090 Cardamine hirsuta HOM05D000806 ORTHO05D002320 1.9e-30 136.3 159 54.7
AL2G21530 Arabidopsis lyrata HOM05D000806 ORTHO05D002320 9.4e-30 134.0 160 53.8
arahy.Tifrunner.gnm1.ann1.J4M97S Arachis hypogaea HOM05D000806 ORTHO05D002320 3.0e-28 129.0 155 53.5
Lsat_1_v5_gn_4_102681 Lactuca sativa HOM05D000806 ORTHO05D002320 3.3e-27 125.6 154 53.2
Migut.L00565 Erythranthe guttata HOM05D000806 ORTHO05D002320 4.4e-27 125.2 88 72.7
Gohir.D04G129256 Gossypium hirsutum HOM05D000806 ORTHO05D002320 2.2e-26 122.9 160 51.2
BolSC46t60998H Brassica oleracea HOM05D000806 ORTHO05D002320 3.8e-23 112.1 135 54.1
Nitab4.5_0009663g0050 Nicotiana tabacum HOM05D000806 ORTHO05D002320 2.5e-22 109.4 72 70.8
Lj1g0000993 Lotus japonicus HOM05D000806 ORTHO05D002320 4.2e-22 108.6 159 46.5
Gohir.A11G156733 Gossypium hirsutum HOM05D000806 ORTHO05D002320 7.2e-22 107.8 119 56.3
HanXRQChr10g0283541 Helianthus annuus HOM05D000806 ORTHO05D002320 2.1e-21 106.3 158 46.2
Lsat_1_v5_gn_7_98321 Lactuca sativa HOM05D000806 ORTHO05D002320 2.7e-21 105.9 156 46.2
arahy.Tifrunner.gnm1.ann1.3WU3U6 Arachis hypogaea HOM05D000806 ORTHO05D002320 6.1e-21 104.8 117 57.3
Gohir.D13G043800 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.0e-20 104.0 161 47.2
Gohir.D13G123550 Gossypium hirsutum HOM05D000806 ORTHO05D002320 5.2e-20 101.7 133 52.6
Gorai.013G138600 Gossypium raimondii HOM05D000806 ORTHO05D002320 8.8e-20 100.9 119 56.3
MD02G1049600 Malus domestica HOM05D001133 ORTHO05D000941 1.7e-18 96.7 94 61.7
Gohir.A07G134850 Gossypium hirsutum HOM05D000806 ORTHO05D002320 3.7e-18 95.5 102 59.8
MD11G1294900 Malus domestica HOM05D001133 ORTHO05D000941 4.2e-14 82.0 86 58.1
Migut.D01360 Erythranthe guttata HOM05D000806 ORTHO05D002320 2.1e-13 79.7 154 39.6
arahy.Tifrunner.gnm1.ann1.HP88CG Arachis hypogaea HOM05D000806 ORTHO05D002320 4.7e-13 78.6 69 62.3
EL10As12g24027 Beta vulgaris HOM05D000806 ORTHO05D002320 1.0e-12 77.4 87 56.3
Gohir.A08G085042 Gossypium hirsutum HOM05D000806 ORTHO05D002320 4.0e-12 75.5 84 58.3
Solyc09g091410.2 Solanum lycopersicum HOM05D000806 ORTHO05D002320 4.0e-12 75.5 55 67.3
Gorai.001G212300 Gossypium raimondii HOM05D000806 ORTHO05D002320 8.8e-12 74.3 88 55.7
MELO3C032364.2 Cucumis melo HOM05D000806 ORTHO05D002320 1.5e-11 73.6 47 80.9
Lsat_1_v5_gn_4_69480 Lactuca sativa HOM05D000806 ORTHO05D002320 2.0e-11 73.2 93 51.6
Gorai.001G206400 Gossypium raimondii HOM05D001133 ORTHO05D000941 1.1e-09 67.4 154 35.1
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 1.1e-09 67.4 65 56.9
SGA_v2.0_scaffold781G53597 Striga asiatica HOM05D000806 ORTHO05D002320 5.3e-09 65.1 62 53.2
AL2G20668 Arabidopsis lyrata HOM05D000806 ORTHO05D002320 2.5e-06 56.2 123 38.2


User provided reference genes

Program Settings