Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C028577.2 Cucumis melo HOM05D001670 ORTHO05D170256 4.1e-54 214.5 113 100.0
MELO3C005963.2 Cucumis melo HOM05D001670 ORTHO05D002980 1.5e-24 116.3 67 92.5
CsaV3_3G007410 Cucumis sativus L. HOM05D001670 ORTHO05D002980 2.9e-23 112.1 67 88.1
ClCG05G000260 Citrullus lanatus HOM05D001670 ORTHO05D002980 2.4e-22 109.0 67 83.6
Sed0002470 Sechium edule HOM05D001670 ORTHO05D002980 8.9e-17 90.5 60 80.0
TPR.G28734 Trifolium pratense HOM05D001670 ORTHO05D002980 1.2e-13 80.1 65 60.0
Prupe.2G135900 Prunus persica HOM05D001670 ORTHO05D002980 6.0e-13 77.8 66 57.6
Haze_02721 Corylus avellana HOM05D001670 ORTHO05D002980 1.3e-12 76.6 63 58.7
QL04p035871 Quercus lobata HOM05D001670 ORTHO05D002980 1.7e-12 76.3 63 58.7
MD07G1112500 Malus domestica HOM05D001670 ORTHO05D002980 3.0e-12 75.5 66 59.1
Cfa011137 Carpinus fangiana HOM05D001670 ORTHO05D002980 5.0e-12 74.7 63 57.1
Ca_23116_v3 Cicer arietinum L. HOM05D001670 ORTHO05D002980 6.6e-12 74.3 65 55.4
Thecc.01G385600 Theobroma cacao HOM05D001670 ORTHO05D002980 8.6e-12 73.9 63 57.1
Psat4g209400 Pisum sativum HOM05D001670 ORTHO05D002980 1.1e-11 73.6 65 56.9
CANSAT21G0618 Cannabis sativa HOM05D001670 ORTHO05D002980 1.9e-11 72.8 66 54.5
Glyma.03G118400 Glycine max HOM05D001670 ORTHO05D002980 1.9e-11 72.8 65 60.0
MD02G1214300 Malus domestica HOM05D001670 ORTHO05D002980 1.9e-11 72.8 66 59.1
RcHm_v2.0_Chr1g0348711 Rosa chinensis HOM05D001670 ORTHO05D002980 1.9e-11 72.8 66 59.1
FvH4_7g10770 Fragaria vesca HOM05D001670 ORTHO05D002980 2.5e-11 72.4 66 57.6
COL.COLO4_12469 Corchorus olitorius HOM05D001670 ORTHO05D002980 3.3e-11 72.0 63 57.1
Glyma.07G108700 Glycine max HOM05D001670 ORTHO05D002980 3.3e-11 72.0 65 60.0
Phvul.010G056800 Phaseolus vulgaris HOM05D001670 ORTHO05D002980 4.3e-11 71.6 65 60.0
Medtr8g005820 Medicago truncatula HOM05D001670 ORTHO05D002980 5.6e-11 71.2 65 55.4
TWI14G1227 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 7.3e-11 70.9 66 56.1
CiPaw.14G024400 Carya illinoinensis HOM05D001670 ORTHO05D002980 9.5e-11 70.5 63 52.4
Gohir.A12G095700 Gossypium hirsutum HOM05D001670 ORTHO05D002980 9.5e-11 70.5 63 54.0
Gohir.D12G098300 Gossypium hirsutum HOM05D001670 ORTHO05D002980 9.5e-11 70.5 63 54.0
Gorai.008G107100 Gossypium raimondii HOM05D001670 ORTHO05D002980 9.5e-11 70.5 63 54.0
Lalb_Chr07g0195691 Lupinus albus HOM05D001670 ORTHO05D002980 9.5e-11 70.5 65 56.9
FAN03G2300 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.6e-10 69.7 66 56.1
FAN06G0311 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.6e-10 69.7 66 56.1
FAN06G1683 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.6e-10 69.7 66 56.1
Lj3g0005567 Lotus japonicus HOM05D001670 ORTHO05D002980 1.6e-10 69.7 65 53.8
Gohir.D11G082400 Gossypium hirsutum HOM05D001670 ORTHO05D002980 2.8e-10 68.9 63 55.6
Gorai.007G088100 Gossypium raimondii HOM05D001670 ORTHO05D002980 2.8e-10 68.9 63 55.6
TWI59G0301 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 3.6e-10 68.6 67 55.2
Cpa.g.sc212.1 Carica papaya HOM05D001670 ORTHO05D002980 4.7e-10 68.2 69 52.2
Gohir.A11G078000 Gossypium hirsutum HOM05D001670 ORTHO05D002980 8.1e-10 67.4 63 54.0
CiPaw.13G031300 Carya illinoinensis HOM05D001670 ORTHO05D002980 1.1e-09 67.0 60 53.3
FAN10G0390 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.1e-09 67.0 66 53.0
FAN10G2564 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.1e-09 67.0 66 53.0
CSS0023490 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 1.4e-09 66.6 66 53.0
CSS0045110 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 1.4e-09 66.6 66 53.0
Duzib268G0141 Durio zibethinus HOM05D001670 ORTHO05D002980 1.4e-09 66.6 63 54.0
FAN01G0667 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.4e-09 66.6 66 54.5
Lalb_Chr13g0290371 Lupinus albus HOM05D001670 ORTHO05D002980 1.4e-09 66.6 65 52.3
GSVIVG01018178001 Vitis vinifera HOM05D001670 ORTHO05D002980 1.8e-09 66.2 66 51.5
VMungo0331G0876 Vigna mungo HOM05D001670 ORTHO05D002980 2.3e-09 65.9 65 55.4
Manes.05G050200 Manihot esculenta HOM05D001670 ORTHO05D002980 4.0e-09 65.1 63 52.4
Duzib133G0195 Durio zibethinus HOM05D001670 ORTHO05D002980 5.2e-09 64.7 63 54.0
Rhsim01G0135600 Rhododendron simsii HOM05D001670 ORTHO05D002980 6.8e-09 64.3 66 53.0
vmacro21039 Vaccinium macrocarpon HOM05D001670 ORTHO05D002980 4.4e-08 61.6 66 50.0
HanXRQChr04g0123421 Helianthus annuus HOM05D001670 ORTHO05D002980 5.8e-08 61.2 66 45.5
Lsat_1_v5_gn_7_10221 Lactuca sativa HOM05D001670 ORTHO05D002980 9.9e-08 60.5 66 53.0
MBI04_g09509_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D002980 2.2e-07 59.3 67 44.8
Dinv06565 Davidia involucrata HOM05D001670 ORTHO05D002980 2.9e-07 58.9 80 40.0
Eucgr.E01609 Eucalyptus grandis HOM05D001670 ORTHO05D002980 3.7e-07 58.5 66 45.5
Atru.chr5.219 Acer truncatum HOM05D001670 ORTHO05D002980 1.4e-06 56.6 63 46.0
DCAR_015867 Daucus carota HOM05D001670 ORTHO05D002980 1.4e-06 56.6 63 52.4
Lj9C563G7 Lonicera japonica HOM05D001670 ORTHO05D002980 1.4e-06 56.6 66 48.5
Manes.01G270100 Manihot esculenta HOM05D001670 ORTHO05D002980 1.9e-06 56.2 68 48.5
arahy.Tifrunner.gnm1.ann1.5NE8AH Arachis hypogaea HOM05D001670 ORTHO05D002980 3.2e-06 55.5 93 36.6
Gohir.D11G082333 Gossypium hirsutum HOM05D001670 ORTHO05D002980 3.2e-06 55.5 53 50.9
Nn6g33938 Nelumbo nucifera HOM05D001670 ORTHO05D002980 5.4e-06 54.7 65 44.6
ECA236G0609 Erigeron canadensis HOM05D001670 ORTHO05D002980 7.1e-06 54.3 66 50.0
Nitab4.5_0000706g0120 Nicotiana tabacum HOM05D001670 ORTHO05D002980 9.2e-06 53.9 60 46.7


User provided reference genes

Program Settings