Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C028554.2 Cucumis melo HOM05D000247 ORTHO05D005467 2.7e-182 642.1 383 100.0
CsaV3_UNG048340 Cucumis sativus L. HOM05D000004 ORTHO05D000034 2.9e-19 100.5 115 46.1
CsaV3_3G021370 Cucumis sativus L. HOM05D000004 ORTHO05D000034 3.8e-19 100.1 111 46.8
MELO3C031393.2 Cucumis melo HOM05D005653 ORTHO05D005467 2.4e-13 80.9 44 90.9
MELO3C010009.2 Cucumis melo HOM05D000247 ORTHO05D005467 3.1e-13 80.5 41 97.6
MELO3C028936.2 Cucumis melo HOM05D000247 ORTHO05D005467 4.1e-13 80.1 40 100.0
MELO3C029465.2 Cucumis melo HOM05D000247 ORTHO05D005467 4.1e-13 80.1 40 100.0
MELO3C034389.2 Cucumis melo HOM05D000247 ORTHO05D005467 6.9e-13 79.3 41 95.1
MELO3C034498.2 Cucumis melo HOM05D000247 ORTHO05D005467 9.1e-13 79.0 41 95.1
MELO3C029053.2 Cucumis melo HOM05D000247 ORTHO05D005467 1.2e-12 78.6 40 97.5
MELO3C029055.2 Cucumis melo HOM05D000247 ORTHO05D005467 1.2e-12 78.6 40 97.5
MELO3C027980.2 Cucumis melo HOM05D000247 ORTHO05D005467 1.5e-12 78.2 39 100.0
MELO3C035601.2 Cucumis melo HOM05D001347 ORTHO05D005467 2.0e-12 77.8 40 95.0
CsaV3_1G044160 Cucumis sativus L. HOM05D000247 ORTHO05D005467 3.4e-12 77.0 41 92.7
ClCG03G011670 Citrullus lanatus HOM05D000247 ORTHO05D005467 4.5e-12 76.6 41 92.7
Sed0000929 Sechium edule HOM05D000247 ORTHO05D005467 4.5e-12 76.6 41 92.7
Sed0017668 Sechium edule HOM05D000247 ORTHO05D005467 5.9e-12 76.3 41 90.2
Sed0023416 Sechium edule HOM05D000004 ORTHO05D000002 1.0e-11 75.5 124 40.3
TWI36G0515 Tripterygium wilfordii HOM05D000247 ORTHO05D005467 1.0e-11 75.5 41 87.8
SalBow6G2018 Salvia bowleyana HOM05D000247 ORTHO05D005467 1.7e-11 74.7 39 92.3
Atru.chr12.1750 Acer truncatum HOM05D000247 ORTHO05D005467 3.8e-11 73.6 41 90.2
MELO3C032626.2 Cucumis melo HOM05D013600 ORTHO05D005467 3.8e-11 73.6 40 92.5
Medtr7g080250 Medicago truncatula HOM05D000247 ORTHO05D005467 3.8e-11 73.6 41 87.8
Lalb_Chr01g0020531 Lupinus albus HOM05D000247 ORTHO05D005467 5.0e-11 73.2 41 90.2
Phvul.008G053300 Phaseolus vulgaris HOM05D000247 ORTHO05D005467 6.5e-11 72.8 41 90.2
Cfa006252 Carpinus fangiana HOM05D000247 ORTHO05D005467 8.5e-11 72.4 41 87.8
Haze_04582 Corylus avellana HOM05D000247 ORTHO05D005467 8.5e-11 72.4 41 87.8
Cc09_g03800 Coffea canephora HOM05D000247 ORTHO05D005467 1.1e-10 72.0 41 85.4
SGA_v2.0_scaffold122G33187 Striga asiatica HOM05D000247 ORTHO05D005467 1.1e-10 72.0 40 92.5
Actinidia06800 Actinidia chinensis HOM05D000247 ORTHO05D005467 1.4e-10 71.6 41 85.4
Psat3g102640 Pisum sativum HOM05D000247 ORTHO05D005467 1.4e-10 71.6 40 90.0
TPR.G23770 Trifolium pratense HOM05D000247 ORTHO05D005467 1.4e-10 71.6 41 87.8
VMungo1383G3087 Vigna mungo HOM05D000247 ORTHO05D005467 1.4e-10 71.6 41 87.8
Actinidia03277 Actinidia chinensis HOM05D000247 ORTHO05D005467 1.9e-10 71.2 41 82.9
Lj1g0021551 Lotus japonicus HOM05D000247 ORTHO05D005467 1.9e-10 71.2 41 82.9
Lalb_Chr03g0038711 Lupinus albus HOM05D000247 ORTHO05D005467 1.9e-10 71.2 41 87.8
MD12G1263900 Malus domestica HOM05D000247 ORTHO05D005467 1.9e-10 71.2 41 87.8
AL3G12140 Arabidopsis lyrata HOM05D000247 ORTHO05D005467 2.5e-10 70.9 45 80.0
Migut.F01866 Erythranthe guttata HOM05D000247 ORTHO05D005467 2.5e-10 70.9 39 89.7
Sp3g01760 Schrenkiella parvula HOM05D000247 ORTHO05D005467 2.5e-10 70.9 45 80.0
AT3G02730 Arabidopsis thaliana HOM05D000247 ORTHO05D005467 3.2e-10 70.5 40 87.5
Carub.0003s0183 Capsella rubella HOM05D000247 ORTHO05D005467 3.2e-10 70.5 40 87.5
CiPaw.07G081500 Carya illinoinensis HOM05D000247 ORTHO05D005467 3.2e-10 70.5 41 85.4
Thhalv10021615m.g Eutrema salsugineum HOM05D000247 ORTHO05D005467 3.2e-10 70.5 40 87.5
MBI11_g00130_MAGBIO Magnolia biondii HOM05D000247 ORTHO05D005467 3.2e-10 70.5 40 87.5
arahy.Tifrunner.gnm1.ann1.2R4S5U Arachis hypogaea HOM05D000247 ORTHO05D005467 4.2e-10 70.1 41 85.4
arahy.Tifrunner.gnm1.ann1.MI3IQM Arachis hypogaea HOM05D000247 ORTHO05D005467 4.2e-10 70.1 41 85.4
CSS0010092 Camellia sinensis var. sinensis HOM05D000247 ORTHO05D005467 4.2e-10 70.1 39 92.3
Gohir.A13G114500 Gossypium hirsutum HOM05D000247 ORTHO05D005467 4.2e-10 70.1 43 81.4
Gohir.D13G117400 Gossypium hirsutum HOM05D000247 ORTHO05D005467 4.2e-10 70.1 43 81.4
Gorai.013G132000 Gossypium raimondii HOM05D000247 ORTHO05D005467 4.2e-10 70.1 43 81.4
ATR0824G128 Amborella trichopoda HOM05D000247 ORTHO05D005467 5.5e-10 69.7 41 85.4
Dinv15375 Davidia involucrata HOM05D000247 ORTHO05D005467 5.5e-10 69.7 41 82.9
Manes.13G004600 Manihot esculenta HOM05D000247 ORTHO05D005467 5.5e-10 69.7 41 82.9
FvH4_6g00380 Fragaria vesca HOM05D000247 ORTHO05D005467 7.2e-10 69.3 41 85.4
FAN09G0601 Fragaria x ananassa HOM05D000247 ORTHO05D005467 7.2e-10 69.3 41 85.4
FAN14G3072 Fragaria x ananassa HOM05D000247 ORTHO05D005467 7.2e-10 69.3 41 85.4
TWI75G1857 Tripterygium wilfordii HOM05D000247 ORTHO05D005467 7.2e-10 69.3 41 80.5
vmacro19615 Vaccinium macrocarpon HOM05D000247 ORTHO05D005467 7.2e-10 69.3 41 82.9
BNapus_Darmor_BZH_scaffold_99p00230 Brassica napus HOM05D000247 ORTHO05D005467 9.4e-10 68.9 40 85.0
BolC1t05881H Brassica oleracea HOM05D000247 ORTHO05D005467 9.4e-10 68.9 40 85.0
BraA01t04621Z Brassica rapa HOM05D000247 ORTHO05D005467 9.4e-10 68.9 40 85.0
FAN02G4262 Fragaria x ananassa HOM05D000247 ORTHO05D005467 9.4e-10 68.9 41 85.4
Hma1.2p1_0609F.1_g188510 Hydrangea macrophylla HOM05D000247 ORTHO05D005467 9.4e-10 68.9 42 83.3
Hma1.2p1_0609F.1_g188515 Hydrangea macrophylla HOM05D000247 ORTHO05D005467 9.4e-10 68.9 42 83.3
Hma1.2p1_0609F.1_g188520 Hydrangea macrophylla HOM05D000247 ORTHO05D005467 9.4e-10 68.9 42 83.3
MD04G1246200 Malus domestica HOM05D000247 ORTHO05D005467 9.4e-10 68.9 41 85.4
Nn3g20156 Nelumbo nucifera HOM05D000247 ORTHO05D005467 9.4e-10 68.9 40 85.0
Oeu034780.1 Olea europaea HOM05D000247 ORTHO05D005467 9.4e-10 68.9 39 87.2
PGR031G3232 Punica granatum HOM05D000247 ORTHO05D005467 9.4e-10 68.9 41 82.9
RcHm_v2.0_Chr3g0447721 Rosa chinensis HOM05D000247 ORTHO05D005467 9.4e-10 68.9 41 85.4
Aa31LG5G13200 Aethionema arabicum HOM05D000247 ORTHO05D005467 1.2e-09 68.6 39 87.2
Cpa.g.sc39.18 Carica papaya HOM05D000247 ORTHO05D005467 1.2e-09 68.6 41 82.9
Glyma.18G243200 Glycine max HOM05D000247 ORTHO05D005467 1.2e-09 68.6 39 89.7
Duzib177G0105 Durio zibethinus HOM05D000247 ORTHO05D005467 1.6e-09 68.2 41 82.9
Eucgr.H01629 Eucalyptus grandis HOM05D000247 ORTHO05D005467 1.6e-09 68.2 41 82.9
PGR119G0647 Punica granatum HOM05D000247 ORTHO05D005467 1.6e-09 68.2 41 80.5
Thecc.05G192000 Theobroma cacao HOM05D000247 ORTHO05D005467 1.6e-09 68.2 41 82.9
CANSAT54G0629 Cannabis sativa HOM05D000247 ORTHO05D005467 2.1e-09 67.8 40 87.5
CDE05G1927 Ceratophyllum demersum HOM05D000247 ORTHO05D005467 2.1e-09 67.8 39 79.5
Thhalv10014778m.g Eutrema salsugineum HOM05D000247 ORTHO05D005467 2.1e-09 67.8 39 84.6
Prupe.6G362500 Prunus persica HOM05D000247 ORTHO05D005467 2.1e-09 67.8 41 82.9
Eucgr.B01424 Eucalyptus grandis HOM05D000247 ORTHO05D005467 2.7e-09 67.4 41 82.9
SalBow1G5091 Salvia bowleyana HOM05D000247 ORTHO05D005467 2.7e-09 67.4 41 80.5
COL.COLO4_33466 Corchorus olitorius HOM05D000247 ORTHO05D005467 3.6e-09 67.0 40 85.0
Migut.F02110 Erythranthe guttata HOM05D000247 ORTHO05D005467 3.6e-09 67.0 39 84.6
Rhsim10G0057900 Rhododendron simsii HOM05D000247 ORTHO05D005467 3.6e-09 67.0 41 80.5
SMO203G0060 Selaginella moellendorffii HOM05D000247 ORTHO05D005467 3.6e-09 67.0 41 78.0
Carub.0006s1459 Capsella rubella HOM05D000247 ORTHO05D005467 4.7e-09 66.6 39 82.1
CDE05G1910 Ceratophyllum demersum HOM05D000247 ORTHO05D005467 4.7e-09 66.6 39 79.5
Zm00001eb418040 Zea mays HOM05D000247 ORTHO05D005467 4.7e-09 66.6 41 82.9
Aqoxy5G00017 Aquilegia oxysepala HOM05D000247 ORTHO05D005467 6.1e-09 66.2 39 84.6
C09p75870 Brassica napus HOM05D000247 ORTHO05D005467 6.1e-09 66.2 45 71.1
BolC5t35070H Brassica oleracea HOM05D000247 ORTHO05D005467 6.1e-09 66.2 45 71.1
BraA06t23293Z Brassica rapa HOM05D000247 ORTHO05D005467 6.1e-09 66.2 45 71.1
Os01g0913000 Oryza sativa ssp. japonica HOM05D000247 ORTHO05D005467 6.1e-09 66.2 40 82.5
Rhsim05G0167700 Rhododendron simsii HOM05D000247 ORTHO05D005467 6.1e-09 66.2 41 78.0
Sed0019323 Sechium edule HOM05D000004 ORTHO05D000002 6.1e-09 66.2 89 41.6
Solyc05g056300.4 Solanum lycopersicum HOM05D000247 ORTHO05D005467 6.1e-09 66.2 39 84.6
Sopen05g034690 Solanum pennellii HOM05D000247 ORTHO05D005467 6.1e-09 66.2 39 84.6
PGSC0003DMG400023333 Solanum tuberosum HOM05D000247 ORTHO05D005467 6.1e-09 66.2 39 84.6
GSVIVG01019070001 Vitis vinifera HOM05D000247 ORTHO05D005467 6.1e-09 66.2 40 82.5
AL6G27330 Arabidopsis lyrata HOM05D000247 ORTHO05D005467 7.9e-09 65.9 39 82.1
AT5G16400 Arabidopsis thaliana HOM05D000247 ORTHO05D005467 7.9e-09 65.9 39 82.1
Potri.019G054800 Populus trichocarpa HOM05D000247 ORTHO05D005467 7.9e-09 65.9 41 80.5
MSTRG.9245 Avicennia marina HOM05D000247 ORTHO05D005467 1.0e-08 65.5 39 84.6
A05p44370 Brassica napus HOM05D000247 ORTHO05D005467 1.0e-08 65.5 40 77.5
CAN.G1921.8 Capsicum annuum HOM05D000247 ORTHO05D005467 1.0e-08 65.5 39 84.6
Ciclev10013409m.g Citrus clementina HOM05D000247 ORTHO05D005467 1.0e-08 65.5 40 82.5
FAN05G0844 Fragaria x ananassa HOM05D000247 ORTHO05D005467 1.0e-08 65.5 41 80.5
HanXRQChr17g0556061 Helianthus annuus HOM05D000247 ORTHO05D005467 1.0e-08 65.5 38 86.8
Sabra19G0063700 Salix brachista HOM05D000247 ORTHO05D005467 1.0e-08 65.5 41 80.5
HPP92_000446 Vanilla planifolia HOM05D000247 ORTHO05D005467 1.4e-08 65.1 39 84.6
Nitab4.5_0000582g0020 Nicotiana tabacum HOM05D000247 ORTHO05D005467 2.3e-08 64.3 39 82.1
Nitab4.5_0013647g0010 Nicotiana tabacum HOM05D000247 ORTHO05D005467 2.3e-08 64.3 39 82.1
unitig_62.g23541 Utricularia gibba HOM05D000247 ORTHO05D005467 2.3e-08 64.3 41 80.5
HanXRQChr08g0220871 Helianthus annuus HOM05D000247 ORTHO05D005467 3.0e-08 63.9 39 82.1
PSO170G0238 Papaver somniferum HOM05D000247 ORTHO05D005467 3.0e-08 63.9 39 82.1
PSO357G0377 Papaver somniferum HOM05D000247 ORTHO05D005467 3.0e-08 63.9 39 82.1
Peaxi162Scf00353g00731 Petunia axillaris HOM05D000247 ORTHO05D005467 3.0e-08 63.9 39 79.5
THA.LOC104820923 Tarenaya hassleriana HOM05D000247 ORTHO05D005467 3.0e-08 63.9 41 75.6
CARHR196860 Cardamine hirsuta HOM05D000247 ORTHO05D005467 3.9e-08 63.5 39 79.5
Lj1C578G15 Lonicera japonica HOM05D000247 ORTHO05D005467 3.9e-08 63.5 40 80.0
THA.LOC104802956 Tarenaya hassleriana HOM05D000247 ORTHO05D005467 3.9e-08 63.5 39 79.5
EL10Ac4g09997 Beta vulgaris HOM05D000247 ORTHO05D005467 5.2e-08 63.2 41 75.6
BcaC05g30514 Brassica carinata HOM05D000247 ORTHO05D005467 5.2e-08 63.2 40 75.0
CDE06G0663 Ceratophyllum demersum HOM05D000247 ORTHO05D005467 5.2e-08 63.2 40 77.5
MELO3C028518.2 Cucumis melo HOM05D008761 ORTHO05D009079 5.2e-08 63.2 62 58.1
Lsat_1_v5_gn_2_17480 Lactuca sativa HOM05D000247 ORTHO05D005467 5.2e-08 63.2 38 86.8
CANSAT11G1607 Cannabis sativa HOM05D000004 ORTHO05D000034 6.7e-08 62.8 81 42.0
Sc09g0001410 Simmondsia chinensis HOM05D000247 ORTHO05D005467 6.7e-08 62.8 42 76.2
Zm00001eb354270 Zea mays HOM05D000247 ORTHO05D005467 6.7e-08 62.8 39 82.1
Ah.06g195420 Amaranthus hybridus HOM05D000247 ORTHO05D005467 8.8e-08 62.4 41 75.6
A02p03510 Brassica napus HOM05D000247 ORTHO05D005467 8.8e-08 62.4 39 74.4
BraA02t05322Z Brassica rapa HOM05D000247 ORTHO05D005467 8.8e-08 62.4 39 74.4
ECA232G0920 Erigeron canadensis HOM05D000247 ORTHO05D005467 8.8e-08 62.4 39 79.5
Sp6g27770 Schrenkiella parvula HOM05D000247 ORTHO05D005467 8.8e-08 62.4 41 70.7
Ah.04g159050 Amaranthus hybridus HOM05D000247 ORTHO05D005467 1.1e-07 62.0 41 75.6
C02p08310 Brassica napus HOM05D000247 ORTHO05D005467 1.1e-07 62.0 39 74.4
BolC2t06751H Brassica oleracea HOM05D000247 ORTHO05D005467 1.1e-07 62.0 39 74.4
MELO3C030797.2 Cucumis melo HOM05D000004 ORTHO05D000002 2.0e-07 61.2 128 33.6
Lsat_1_v5_gn_0_10780 Lactuca sativa HOM05D000247 ORTHO05D005467 2.0e-07 61.2 39 76.9
Oeu009736.1 Olea europaea HOM05D000247 ORTHO05D005467 2.0e-07 61.2 38 81.6
CANSAT01G2289 Cannabis sativa HOM05D000004 ORTHO05D000002 2.6e-07 60.8 78 42.3
BcaC03g15161 Brassica carinata HOM05D000247 ORTHO05D005467 3.3e-07 60.5 39 74.4
CDE02G0703 Ceratophyllum demersum HOM05D000247 ORTHO05D005467 4.4e-07 60.1 40 72.5
AUR62000296 Chenopodium quinoa HOM05D000247 ORTHO05D005467 4.4e-07 60.1 40 75.0
AUR62006642 Chenopodium quinoa HOM05D000247 ORTHO05D005467 4.4e-07 60.1 40 75.0
unitig_52.g17512 Utricularia gibba HOM05D000247 ORTHO05D005467 4.4e-07 60.1 41 73.2
CANSAT78G2221 Cannabis sativa HOM05D000004 ORTHO05D000034 9.7e-07 58.9 74 43.2
ClCG10G007820 Citrullus lanatus HOM05D000004 ORTHO05D000002 1.3e-06 58.5 151 35.1
QL02p050943 Quercus lobata HOM05D000004 ORTHO05D000002 1.7e-06 58.2 75 41.3
Sopen00g005700 Solanum pennellii HOM05D000004 ORTHO05D000034 2.8e-06 57.4 76 34.2
arahy.Tifrunner.gnm1.ann1.SV62YW Arachis hypogaea HOM05D000004 ORTHO05D000002 4.8e-06 56.6 71 42.3
Mapoly0040s0138 Marchantia polymorpha HOM05D000247 ORTHO05D005467 4.8e-06 56.6 40 70.0
Pp3c4_3890 Physcomitrium patens HOM05D000247 ORTHO05D005467 4.8e-06 56.6 40 67.5
CSS0025076 Camellia sinensis var. sinensis HOM05D009540 ORTHO05D000034 6.3e-06 56.2 77 37.7
Sopen06g017340 Solanum pennellii HOM05D000002 ORTHO05D000001 6.3e-06 56.2 76 34.2
arahy.Tifrunner.gnm1.ann1.8BX9LS Arachis hypogaea HOM05D000004 ORTHO05D000002 8.2e-06 55.8 71 42.3


User provided reference genes

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