Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C027064.2 Cucumis melo HOM05D007280 ORTHO05D009108 3.4e-171 605.9 319 100.0
CsaV3_5G017390 Cucumis sativus L. HOM05D007280 ORTHO05D009108 5.1e-159 565.5 317 89.9
ClCG01G006970 Citrullus lanatus HOM05D007280 ORTHO05D009108 4.2e-145 519.2 319 83.1
Sed0008466 Sechium edule HOM05D007280 ORTHO05D009108 4.5e-131 472.6 313 77.0
Cpa.g.sc2.97 Carica papaya HOM05D007280 ORTHO05D009108 1.6e-83 314.7 279 57.7
Manes.17G093400 Manihot esculenta HOM05D007280 ORTHO05D009108 6.6e-82 309.3 325 49.8
Sabra08G0108200 Salix brachista HOM05D007280 ORTHO05D009108 5.6e-81 306.2 321 50.8
Nn4g24834 Nelumbo nucifera HOM05D007280 ORTHO05D009108 3.4e-78 297.0 322 49.7
TAR622G0173 Trochodendron aralioides HOM05D007280 ORTHO05D009108 4.9e-77 293.1 318 48.7
Potri.010G098700 Populus trichocarpa HOM05D007280 ORTHO05D009108 6.4e-77 292.7 326 49.4
Ciclev10004581m.g Citrus clementina HOM05D007280 ORTHO05D009108 1.4e-76 291.6 260 56.2
Prupe.1G342100 Prunus persica HOM05D007280 ORTHO05D009108 1.4e-76 291.6 283 55.1
MD16G1008400 Malus domestica HOM05D007280 ORTHO05D009108 1.2e-75 288.5 244 58.6
Haze_01575 Corylus avellana HOM05D007280 ORTHO05D009108 2.0e-75 287.7 327 47.1
QL03p041451 Quercus lobata HOM05D007280 ORTHO05D009108 2.0e-75 287.7 322 48.1
Cfa015100 Carpinus fangiana HOM05D007280 ORTHO05D009108 5.9e-75 286.2 327 47.1
Lj3P855T51 Lonicera japonica HOM05D007280 ORTHO05D009108 7.8e-75 285.8 272 50.4
MD13G1010900 Malus domestica HOM05D007280 ORTHO05D009108 1.7e-74 284.6 244 57.0
Thecc.09G239200 Theobroma cacao HOM05D007280 ORTHO05D009108 5.0e-74 283.1 322 46.9
Rhsim04G0168900 Rhododendron simsii HOM05D007280 ORTHO05D009108 2.5e-73 280.8 329 49.5
Psat6g095680 Pisum sativum HOM05D007280 ORTHO05D009108 3.3e-73 280.4 329 45.9
VMungo1215G2162 Vigna mungo HOM05D007280 ORTHO05D009108 3.3e-73 280.4 323 45.8
Lalb_Chr17g0338341 Lupinus albus HOM05D007280 ORTHO05D009108 5.6e-73 279.6 282 49.6
Peaxi162Scf00329g00097 Petunia axillaris HOM05D007280 ORTHO05D009108 1.2e-72 278.5 341 48.4
FAN07G2371 Fragaria x ananassa HOM05D007280 ORTHO05D009108 2.1e-72 277.7 325 49.8
DCAR_023520 Daucus carota HOM05D007280 ORTHO05D009108 4.7e-72 276.6 276 48.9
FAN12G0470 Fragaria x ananassa HOM05D007280 ORTHO05D009108 6.2e-72 276.2 278 53.2
Glyma.07G177100 Glycine max HOM05D007280 ORTHO05D009108 6.2e-72 276.2 277 52.3
Hma1.2p1_0319F.1_g123900 Hydrangea macrophylla HOM05D007280 ORTHO05D009108 1.1e-71 275.4 285 51.6
Ca_12458_v3 Cicer arietinum L. HOM05D007280 ORTHO05D009108 2.3e-71 274.2 322 44.7
FvH4_4g36140 Fragaria vesca HOM05D007280 ORTHO05D009108 2.3e-71 274.2 278 52.5
Glyma.20G010600 Glycine max HOM05D007280 ORTHO05D009108 2.3e-71 274.2 319 48.9
Lj2g0005518 Lotus japonicus HOM05D007280 ORTHO05D009108 3.1e-71 273.9 280 50.4
Phvul.003G013000 Phaseolus vulgaris HOM05D007280 ORTHO05D009108 3.1e-71 273.9 323 46.4
Medtr1g033840 Medicago truncatula HOM05D007280 ORTHO05D009108 1.2e-70 271.9 280 49.3
Sabra10G0071200 Salix brachista HOM05D007280 ORTHO05D009108 1.2e-70 271.9 316 48.1
Potri.008G142900 Populus trichocarpa HOM05D007280 ORTHO05D009108 1.5e-70 271.6 297 49.8
Eucgr.B02618 Eucalyptus grandis HOM05D007280 ORTHO05D009108 2.9e-69 267.3 279 48.4
Solyc04g008570.4 Solanum lycopersicum HOM05D007280 ORTHO05D009108 6.4e-69 266.2 338 42.6
PGSC0003DMG400031369 Solanum tuberosum HOM05D007280 ORTHO05D009108 6.4e-69 266.2 341 43.7
TWI74G1184 Tripterygium wilfordii HOM05D007280 ORTHO05D009108 8.3e-69 265.8 326 46.0
Sopen04g003730 Solanum pennellii HOM05D007280 ORTHO05D009108 1.1e-68 265.4 338 42.6
TPR.G35854 Trifolium pratense HOM05D007280 ORTHO05D009108 1.9e-68 264.6 279 47.3
Duzib168G0083 Durio zibethinus HOM05D007280 ORTHO05D009108 2.4e-68 264.2 295 48.1
CAN.G458.1 Capsicum annuum HOM05D007280 ORTHO05D009108 6.0e-67 259.6 241 51.9
Dinv17118 Davidia involucrata HOM05D007280 ORTHO05D009108 5.0e-66 256.5 203 60.1
CDE08G0845 Ceratophyllum demersum HOM05D007280 ORTHO05D009108 1.5e-65 255.0 279 46.2
Cc11_g02870 Coffea canephora HOM05D007280 ORTHO05D009108 4.3e-65 253.4 276 46.7
PSO782G1316 Papaver somniferum HOM05D007280 ORTHO05D009108 5.6e-65 253.1 234 49.6
PSO063G1027 Papaver somniferum HOM05D007280 ORTHO05D009108 7.3e-65 252.7 232 49.1
CSS0013384 Camellia sinensis var. sinensis HOM05D007280 ORTHO05D009108 9.5e-65 252.3 343 42.6
Sabra08G0108600 Salix brachista HOM05D007280 ORTHO05D009108 4.7e-64 250.0 321 45.2
HanXRQChr16g0526501 Helianthus annuus HOM05D007280 ORTHO05D009108 8.9e-63 245.7 293 43.7
Aqoxy3G04194 Aquilegia oxysepala HOM05D007280 ORTHO05D009108 1.5e-62 245.0 277 47.7
GSVIVG01010259001 Vitis vinifera HOM05D007280 ORTHO05D009108 2.6e-62 244.2 244 51.6
GSVIVG01032336001 Vitis vinifera HOM05D007280 ORTHO05D009108 9.9e-62 242.3 261 49.4
Lsat_1_v5_gn_4_26101 Lactuca sativa HOM05D007280 ORTHO05D009108 6.4e-61 239.6 249 47.0
Aa31sc65G20 Aethionema arabicum HOM05D007280 ORTHO05D009108 1.1e-60 238.8 238 49.2
THA.LOC104819105 Tarenaya hassleriana HOM05D007280 ORTHO05D009108 2.4e-60 237.7 284 43.3
PGR044G2110 Punica granatum HOM05D007280 ORTHO05D009108 2.7e-59 234.2 281 44.8
SalBow3G1417 Salvia bowleyana HOM05D007280 ORTHO05D009108 6.0e-59 233.0 277 41.5
COL.COLO4_36459 Corchorus olitorius HOM05D007280 ORTHO05D009108 3.0e-58 230.7 321 42.4
MSTRG.17728 Avicennia marina HOM05D007280 ORTHO05D009108 8.6e-58 229.2 284 44.0
CiPaw.05G161600 Carya illinoinensis HOM05D007280 ORTHO05D009108 1.5e-57 228.4 323 41.5
Oeu006355.1 Olea europaea HOM05D007280 ORTHO05D009108 3.1e-55 220.7 272 44.5
Gohir.D09G108900 Gossypium hirsutum HOM05D007280 ORTHO05D009108 8.9e-55 219.2 331 39.0
Migut.N02514 Erythranthe guttata HOM05D007280 ORTHO05D009108 1.2e-54 218.8 263 44.1
ECA246G2688 Erigeron canadensis HOM05D007280 ORTHO05D009108 4.4e-54 216.9 242 46.3
ATR0705G126 Amborella trichopoda HOM05D007280 ORTHO05D009108 7.6e-54 216.1 259 43.6
Gohir.D06G095050 Gossypium hirsutum HOM05D007280 ORTHO05D009108 7.6e-54 216.1 331 38.4
AL6G24390 Arabidopsis lyrata HOM05D007280 ORTHO05D009108 1.7e-53 214.9 239 47.7
Gorai.006G126500 Gossypium raimondii HOM05D007280 ORTHO05D009108 2.9e-53 214.2 330 38.8
AT5G13770 Arabidopsis thaliana HOM05D007280 ORTHO05D009108 8.4e-53 212.6 238 47.9
CDE04G3512 Ceratophyllum demersum HOM05D007280 ORTHO05D009108 1.1e-52 212.2 279 41.9
Thhalv10016019m.g Eutrema salsugineum HOM05D007280 ORTHO05D009108 1.4e-52 211.8 239 46.9
Lsat_1_v5_gn_3_27640 Lactuca sativa HOM05D007280 ORTHO05D009108 4.1e-52 210.3 268 40.7
Gohir.A09G112200 Gossypium hirsutum HOM05D007280 ORTHO05D009108 2.7e-51 207.6 239 43.9
Sp6g30250 Schrenkiella parvula HOM05D007280 ORTHO05D009108 2.7e-51 207.6 239 45.6
Carub.0006s1195 Capsella rubella HOM05D007280 ORTHO05D009108 1.0e-50 205.7 239 44.4
MBI03_g37599_MAGBIO Magnolia biondii HOM05D007280 ORTHO05D009108 1.0e-50 205.7 211 49.3
Ah.13g070140 Amaranthus hybridus HOM05D007280 ORTHO05D009108 1.7e-50 204.9 278 40.6
A02p02170 Brassica napus HOM05D007280 ORTHO05D009108 1.1e-49 202.2 236 44.5
BraA02t05191Z Brassica rapa HOM05D007280 ORTHO05D009108 1.5e-49 201.8 236 44.1
C02p06420 Brassica napus HOM05D007280 ORTHO05D009108 4.3e-49 200.3 237 44.7
BolC2t06588H Brassica oleracea HOM05D007280 ORTHO05D009108 4.3e-49 200.3 237 44.7
CARHR199670 Cardamine hirsuta HOM05D007280 ORTHO05D009108 2.1e-48 198.0 214 48.1
BcaNung04186 Brassica carinata HOM05D007280 ORTHO05D009108 9.9e-46 189.1 239 43.5
AUR62019383 Chenopodium quinoa HOM05D007280 ORTHO05D009108 1.3e-45 188.7 282 38.3
AUR62006107 Chenopodium quinoa HOM05D007280 ORTHO05D009108 1.1e-44 185.7 281 38.1
Ah.07g205740 Amaranthus hybridus HOM05D007280 ORTHO05D009108 1.0e-42 179.1 276 36.2
Sc14g0006690 Simmondsia chinensis HOM05D007280 ORTHO05D009108 1.0e-42 179.1 214 42.1
Os04g0583101 Oryza sativa ssp. japonica HOM05D007280 ORTHO05D009108 5.1e-42 176.8 276 37.7
Zm00001eb072910 Zea mays HOM05D007280 ORTHO05D009108 1.4e-36 158.7 236 36.0
QL11p025168 Quercus lobata HOM05D007280 ORTHO05D009108 6.9e-31 139.8 156 43.6
Ciclev10006779m.g Citrus clementina HOM05D007280 ORTHO05D009108 5.8e-30 136.7 105 62.9
Nitab4.5_0000129g0410 Nicotiana tabacum HOM05D007280 ORTHO05D009108 4.6e-27 127.1 105 57.1
Nitab4.5_0003882g0050 Nicotiana tabacum HOM05D007280 ORTHO05D009108 3.0e-26 124.4 105 57.1
QL11p025101 Quercus lobata HOM05D007280 ORTHO05D009108 1.4e-23 115.5 108 50.9
RcHm_v2.0_Chr4g0445881 Rosa chinensis HOM05D007280 ORTHO05D009108 6.0e-19 100.1 277 30.7
SEGI_25718 Sequoiadendron giganteum HOM05D007280 ORTHO05D009108 6.1e-11 73.6 130 31.5
Sp3g31980 Schrenkiella parvula HOM05D000891 ORTHO05D000761 9.7e-09 66.2 161 24.2
C09p14070 Brassica napus HOM05D000891 ORTHO05D000761 1.7e-08 65.5 161 24.8
BraA09t36840Z Brassica rapa HOM05D000891 ORTHO05D000761 2.2e-08 65.1 161 24.8
A09p11950 Brassica napus HOM05D000891 ORTHO05D000761 3.7e-08 64.3 161 24.2
Thhalv10023199m.g Eutrema salsugineum HOM05D000891 ORTHO05D000761 3.7e-08 64.3 161 24.2
BcaC04g22899 Brassica carinata HOM05D000891 ORTHO05D000761 4.8e-08 63.9 161 24.2
BolC9t54304H Brassica oleracea HOM05D000891 ORTHO05D000761 4.8e-08 63.9 161 24.2
CARHR109130 Cardamine hirsuta HOM05D000891 ORTHO05D000761 8.2e-08 63.2 161 23.6
AL3G51870 Arabidopsis lyrata HOM05D000891 ORTHO05D000761 2.4e-07 61.6 160 23.8
BcaB03g12377 Brassica carinata HOM05D000891 ORTHO05D000761 2.4e-07 61.6 154 27.9
AT2G18520 Arabidopsis thaliana HOM05D000891 ORTHO05D000761 1.2e-06 59.3 160 23.8
A07p07090 Brassica napus HOM05D007486 ORTHO05D003673 1.5e-06 58.9 241 21.6
Cpa.g.sc8.109 Carica papaya HOM05D007486 ORTHO05D003673 4.5e-06 57.4 224 23.7
Potri.005G187800 Populus trichocarpa HOM05D000001 ORTHO05D000003 4.5e-06 57.4 131 23.7


User provided reference genes

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