Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C026794.2 Cucumis melo HOM05D003492 ORTHO05D005115 0.0e+00 3748.4 1859 100.0
CsaV3_5G010260 Cucumis sativus L. HOM05D003492 ORTHO05D005115 0.0e+00 3570.8 1824 97.1
ClCG07G004320 Citrullus lanatus HOM05D003492 ORTHO05D005115 0.0e+00 3524.9 1824 95.9
Sed0003450 Sechium edule HOM05D003492 ORTHO05D005115 0.0e+00 3395.5 1825 92.4
Prupe.2G252000 Prunus persica HOM05D003492 ORTHO05D005115 0.0e+00 2697.2 1826 73.2
MD07G1223400 Malus domestica HOM05D003492 ORTHO05D005115 0.0e+00 2687.5 1830 72.5
QL08p063313 Quercus lobata HOM05D003492 ORTHO05D005115 0.0e+00 2676.4 1936 70.1
CANSAT56G1673 Cannabis sativa HOM05D003492 ORTHO05D005115 0.0e+00 2649.8 1837 71.5
Cfa001305 Carpinus fangiana HOM05D003492 ORTHO05D005115 0.0e+00 2635.1 1796 73.0
Dinv10611 Davidia involucrata HOM05D003492 ORTHO05D005115 0.0e+00 2630.1 1849 71.3
FvH4_7g24630 Fragaria vesca HOM05D003492 ORTHO05D005115 0.0e+00 2630.1 1835 71.4
GSVIVG01032797001 Vitis vinifera HOM05D003492 ORTHO05D005115 0.0e+00 2629.0 1925 68.2
RcHm_v2.0_Chr1g0370461 Rosa chinensis HOM05D003492 ORTHO05D005115 0.0e+00 2627.8 1831 71.7
Manes.07G131200 Manihot esculenta HOM05D003492 ORTHO05D005115 0.0e+00 2622.8 1830 71.4
Potri.008G070300 Populus trichocarpa HOM05D003492 ORTHO05D005115 0.0e+00 2612.4 1830 71.1
FAN06G4945 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2611.6 1841 70.9
FAN10G4174 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2602.4 1853 70.4
Atru.chr12.67 Acer truncatum HOM05D003492 ORTHO05D005115 0.0e+00 2600.1 1832 70.7
Gorai.011G292500 Gossypium raimondii HOM05D003492 ORTHO05D005115 0.0e+00 2588.9 1828 70.4
Gohir.D10G252000 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 2588.5 1828 70.3
FAN01G1605 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2582.4 1888 69.1
TWI09G0940 Tripterygium wilfordii HOM05D003492 ORTHO05D005115 0.0e+00 2573.5 1829 69.7
Duzib106G0351 Durio zibethinus HOM05D003492 ORTHO05D005115 0.0e+00 2562.7 1828 69.7
Haze_17240 Corylus avellana HOM05D003492 ORTHO05D005115 0.0e+00 2530.4 1896 68.5
Ca_05974_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 0.0e+00 2528.4 1824 68.4
Sabra08G0051700 Salix brachista HOM05D003492 ORTHO05D005115 0.0e+00 2525.7 1965 65.9
TPR.G38386 Trifolium pratense HOM05D003492 ORTHO05D005115 0.0e+00 2523.0 1823 68.4
LjContig00357g0011776 Lotus japonicus HOM05D003492 ORTHO05D005115 0.0e+00 2521.9 1825 68.5
Glyma.02G258100 Glycine max HOM05D003492 ORTHO05D005115 0.0e+00 2519.6 1833 68.4
Lalb_Chr04g0250511 Lupinus albus HOM05D003492 ORTHO05D005115 0.0e+00 2515.3 1823 68.7
Phvul.008G222900 Phaseolus vulgaris HOM05D003492 ORTHO05D005115 0.0e+00 2507.6 1821 68.1
Nn2g10890 Nelumbo nucifera HOM05D003492 ORTHO05D005115 0.0e+00 2502.6 1827 67.7
arahy.Tifrunner.gnm1.ann1.J7W2E5 Arachis hypogaea HOM05D003492 ORTHO05D005115 0.0e+00 2498.8 1828 68.1
arahy.Tifrunner.gnm1.ann1.V2YUX7 Arachis hypogaea HOM05D003492 ORTHO05D005115 0.0e+00 2488.8 1867 66.9
Medtr5g082890 Medicago truncatula HOM05D003492 ORTHO05D005115 0.0e+00 2488.0 1821 67.5
Psat2g032000 Pisum sativum HOM05D003492 ORTHO05D005115 0.0e+00 2487.6 1837 67.3
Glyma.14G058400 Glycine max HOM05D003492 ORTHO05D005115 0.0e+00 2460.3 1825 67.4
vmacro10035 Vaccinium macrocarpon HOM05D003492 ORTHO05D005115 0.0e+00 2449.9 1950 64.1
Rhsim09G0177900 Rhododendron simsii HOM05D003492 ORTHO05D005115 0.0e+00 2439.5 1944 63.6
CSS0013780 Camellia sinensis var. sinensis HOM05D003492 ORTHO05D005115 0.0e+00 2435.6 1826 67.2
Thecc.10G014500 Theobroma cacao HOM05D003492 ORTHO05D005115 0.0e+00 2426.0 1699 70.7
VMungo0647G1152 Vigna mungo HOM05D003492 ORTHO05D005115 0.0e+00 2426.0 1823 66.8
Lsat_1_v5_gn_2_124500 Lactuca sativa HOM05D003492 ORTHO05D005115 0.0e+00 2393.6 1839 65.4
Aqoxy4G02502 Aquilegia oxysepala HOM05D003492 ORTHO05D005115 0.0e+00 2388.6 1827 64.2
PSO339G2087 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 2381.3 1826 64.7
PSO384G0172 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 2380.5 1826 64.8
Sopen06g014600 Solanum pennellii HOM05D003492 ORTHO05D005115 0.0e+00 2369.0 1826 65.1
ECA238G3428 Erigeron canadensis HOM05D003492 ORTHO05D005115 0.0e+00 2359.3 1830 64.3
Sc11g0005130 Simmondsia chinensis HOM05D003492 ORTHO05D005115 0.0e+00 2347.4 1827 64.2
HanXRQChr14g0459601 Helianthus annuus HOM05D003492 ORTHO05D005115 0.0e+00 2342.4 1831 64.3
MSTRG.8339 Avicennia marina HOM05D003492 ORTHO05D005115 0.0e+00 2333.1 1818 64.5
Migut.F01404 Erythranthe guttata HOM05D003492 ORTHO05D005115 0.0e+00 2313.5 1820 63.3
THA.LOC104816541 Tarenaya hassleriana HOM05D003492 ORTHO05D005115 0.0e+00 2309.6 1827 63.4
AUR62012268 Chenopodium quinoa HOM05D003492 ORTHO05D005115 0.0e+00 2302.3 1820 63.6
PGR142G1812 Punica granatum HOM05D003492 ORTHO05D005115 0.0e+00 2295.8 1828 64.3
Eucgr.G03070 Eucalyptus grandis HOM05D003492 ORTHO05D005115 0.0e+00 2278.4 1732 65.3
Gohir.A10G240100 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 2270.4 1595 70.5
AUR62022903 Chenopodium quinoa HOM05D003492 ORTHO05D005115 0.0e+00 2266.5 1829 62.9
Sp6g37310 Schrenkiella parvula HOM05D003492 ORTHO05D005115 0.0e+00 2264.2 1829 62.7
Carub.0006s0446 Capsella rubella HOM05D003492 ORTHO05D005115 0.0e+00 2256.5 1832 61.9
AT5G05560 Arabidopsis thaliana HOM05D003492 ORTHO05D005115 0.0e+00 2249.9 1827 62.0
AL6G15450 Arabidopsis lyrata HOM05D003492 ORTHO05D005115 0.0e+00 2244.2 1831 61.9
BcaB01g05759 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 2242.6 1830 62.2
Solyc06g048460.2 Solanum lycopersicum HOM05D003492 ORTHO05D005115 0.0e+00 2240.3 1700 66.0
DCAR_011823 Daucus carota HOM05D003492 ORTHO05D005115 0.0e+00 2239.5 1729 65.2
EL10Ac2g04850 Beta vulgaris HOM05D003492 ORTHO05D005115 0.0e+00 2230.7 1951 58.5
C02p02390 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 2225.3 1841 61.4
BraA03t09597Z Brassica rapa HOM05D003492 ORTHO05D005115 0.0e+00 2221.4 1834 61.5
CARHR207700 Cardamine hirsuta HOM05D003492 ORTHO05D005115 0.0e+00 2197.9 1828 61.5
BraA02t04853Z Brassica rapa HOM05D003492 ORTHO05D005115 0.0e+00 2192.2 1871 60.4
BcaB01g05953 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 2190.2 1827 61.0
A03p02330 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 2187.9 1834 60.7
C03p02660 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 2184.1 1846 60.7
BolC2t06204H Brassica oleracea HOM05D003492 ORTHO05D005115 0.0e+00 2172.1 1858 59.8
SGA_v2.0_scaffold365G49997 Striga asiatica HOM05D003492 ORTHO05D005115 0.0e+00 2157.5 1847 60.2
BolC3t12820H Brassica oleracea HOM05D003492 ORTHO05D005115 0.0e+00 2157.1 1860 59.9
ATR0681G383 Amborella trichopoda HOM05D003492 ORTHO05D005115 0.0e+00 2126.7 1840 58.4
Aa31LG11G6620 Aethionema arabicum HOM05D003492 ORTHO05D005115 0.0e+00 2119.4 1858 58.7
Ah.16g103640 Amaranthus hybridus HOM05D003492 ORTHO05D005115 0.0e+00 2094.3 1836 58.7
Cpa.g.sc19.161 Carica papaya HOM05D003492 ORTHO05D005115 0.0e+00 2078.5 1856 58.6
Ciclev10030498m.g Citrus clementina HOM05D003492 ORTHO05D005115 0.0e+00 2077.0 1451 70.8
Nitab4.5_0000797g0050 Nicotiana tabacum HOM05D003492 ORTHO05D005115 0.0e+00 2058.1 1791 60.5
Thhalv10012420m.g Eutrema salsugineum HOM05D003492 ORTHO05D005115 0.0e+00 2048.9 1842 58.4
TAR623G0495 Trochodendron aralioides HOM05D003492 ORTHO05D005115 0.0e+00 1974.5 1471 67.2
BcaB05g21711 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 1812.0 1518 61.6
FAN03G1412 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 1783.8 1211 73.5
Hund15919 Selenicereus undatus HOM05D003492 ORTHO05D005115 0.0e+00 1723.4 1226 68.8
Cc02_g06280 Coffea canephora HOM05D003492 ORTHO05D005115 0.0e+00 1690.6 1327 64.1
unitig_60.g25675 Utricularia gibba HOM05D003492 ORTHO05D005115 0.0e+00 1638.2 1749 51.0
Oeu049666.1 Olea europaea HOM05D003492 ORTHO05D005115 0.0e+00 1593.2 1412 58.7
CiPaw.01G300000 Carya illinoinensis HOM05D003492 ORTHO05D005115 0.0e+00 1536.5 970 79.2
Pp3c11_19460 Physcomitrium patens HOM05D003492 ORTHO05D005115 0.0e+00 1464.5 1951 42.9
Mapoly0044s0071 Marchantia polymorpha HOM05D003492 ORTHO05D005115 0.0e+00 1439.1 1939 42.2
AagrBONN_evm.TU.Sc2ySwM_344.5492 Anthoceros agrestis HOM05D003492 ORTHO05D005115 0.0e+00 1402.9 1787 44.2
Actinidia13945 Actinidia chinensis HOM05D003492 ORTHO05D005115 0.0e+00 1382.1 1050 65.1
Nitab4.5_0011089g0010 Nicotiana tabacum HOM05D003492 ORTHO05D005115 0.0e+00 1341.3 1352 55.3
Os05g0354300 Oryza sativa ssp. japonica HOM05D003492 ORTHO05D005115 0.0e+00 1230.7 934 65.0
MBI15_g19421_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 0.0e+00 1189.1 1151 56.3
SMO331G0080 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 0.0e+00 1186.0 1858 39.5
HPP92_012039 Vanilla planifolia HOM05D003492 ORTHO05D005115 0.0e+00 1185.6 903 63.6
Zm00001eb286110 Zea mays HOM05D003492 ORTHO05D005115 0.0e+00 1153.7 1222 51.1
Peaxi162Scf00284g00913 Petunia axillaris HOM05D003492 ORTHO05D005115 0.0e+00 1137.5 787 71.7
Lj8C65G6 Lonicera japonica HOM05D003492 ORTHO05D005115 0.0e+00 1075.5 908 62.7
CBR_g22845 Chara braunii HOM05D003492 ORTHO05D005115 1.4e-297 1027.3 2194 33.5
Peaxi162Scf00284g00912 Petunia axillaris HOM05D003492 ORTHO05D005115 1.4e-289 1000.7 910 57.1
CAN.G78.68 Capsicum annuum HOM05D003492 ORTHO05D005115 5.2e-255 885.9 816 55.8
CiPaw.01G300100 Carya illinoinensis HOM05D003492 ORTHO05D005115 8.6e-234 815.5 634 65.5
CDE12G0911 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 1.1e-231 808.5 725 56.0
SMO105G0008 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 7.8e-227 792.3 864 49.3
Actinidia13944 Actinidia chinensis HOM05D003492 ORTHO05D005115 5.6e-217 759.6 516 70.9
FAN03G1608 Fragaria x ananassa HOM05D003492 ORTHO05D005115 3.1e-215 753.8 625 61.8
CAN.G1193.3 Capsicum annuum HOM05D003492 ORTHO05D005115 1.5e-206 724.9 519 68.2
SHI03328 Sapria himalayana HOM05D003492 ORTHO05D005115 8.7e-202 709.1 512 68.4
CDE12G0028 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 1.8e-183 648.3 1077 37.8
SEGI_27844 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 3.8e-181 640.6 523 59.5
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 8.7e-178 629.4 900 44.7
Rhsim10G0095300 Rhododendron simsii HOM05D003492 ORTHO05D005115 1.6e-176 625.2 565 60.5
MCO04G065 Micromonas commoda HOM05D003492 ORTHO05D005115 3.6e-171 607.4 883 41.1
SEGI_00595 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 3.0e-154 551.2 723 43.4
Cc02_g06300 Coffea canephora HOM05D003492 ORTHO05D005115 9.1e-151 539.7 399 64.9
SHI03332 Sapria himalayana HOM05D003492 ORTHO05D005115 8.5e-149 533.1 432 62.7
CAN.G78.71 Capsicum annuum HOM05D003492 ORTHO05D005115 1.5e-132 479.2 330 69.7
CAN.G1782.1 Capsicum annuum HOM05D003492 ORTHO05D005115 5.2e-130 470.7 439 55.1
Hund29345 Selenicereus undatus HOM05D003492 ORTHO05D005115 1.3e-128 466.1 533 46.3
SalBow5G5368 Salvia bowleyana HOM05D003492 ORTHO05D005115 8.9e-122 443.4 376 59.0
Hund28567 Selenicereus undatus HOM05D003492 ORTHO05D005115 1.2e-121 443.0 512 46.1
Lj8A65G43 Lonicera japonica HOM05D003492 ORTHO05D005115 2.0e-121 442.2 312 68.9
TAR623G0911 Trochodendron aralioides HOM05D003492 ORTHO05D005115 6.0e-118 430.6 311 66.6
Hma1.2p1_0235F.1_g098570 Hydrangea macrophylla HOM05D003492 ORTHO05D005115 4.6e-110 404.4 347 58.8
Cre13.g579100 Chlamydomonas reinhardtii HOM05D003492 ORTHO05D005115 1.2e-107 396.4 838 33.3
Ca_30996_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 8.1e-107 393.7 311 62.4
Nitab4.5_0011089g0020 Nicotiana tabacum HOM05D003492 ORTHO05D005115 2.4e-103 382.1 396 52.3
Gorai.011G292700 Gossypium raimondii HOM05D003492 ORTHO05D005115 7.1e-103 380.6 254 75.2
Actinidia35642 Actinidia chinensis HOM05D003492 ORTHO05D005115 3.5e-102 378.3 386 55.7
HPP92_012038 Vanilla planifolia HOM05D003492 ORTHO05D005115 1.7e-101 375.9 398 50.8
Cfa022850 Carpinus fangiana HOM05D003492 ORTHO05D005115 4.6e-86 324.7 811 30.7
CAN.G78.70 Capsicum annuum HOM05D003492 ORTHO05D005115 1.8e-85 322.8 186 84.9
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 3.1e-82 312.0 421 42.8
Psat2g110320 Pisum sativum HOM05D003492 ORTHO05D005115 2.1e-75 289.3 384 44.0
Lj8A65T41 Lonicera japonica HOM05D003492 ORTHO05D005115 3.3e-60 238.8 178 66.9
HPP92_012036 Vanilla planifolia HOM05D003492 ORTHO05D005115 4.2e-47 195.3 233 45.9
Psat1g148680 Pisum sativum HOM05D003492 ORTHO05D024801 7.2e-47 194.5 154 63.0
Psat7g005400 Pisum sativum HOM05D003492 ORTHO05D024801 4.8e-43 181.8 186 51.6
SHI03327 Sapria himalayana HOM05D003492 ORTHO05D000001 3.1e-42 179.1 454 29.3
Thhalv10015394m.g Eutrema salsugineum HOM05D003492 ORTHO05D035223 8.5e-40 171.0 143 62.2
Duzib114G0096 Durio zibethinus HOM05D003492 ORTHO05D005115 1.9e-39 169.9 126 65.9
Lsat_1_v5_gn_2_57160 Lactuca sativa HOM05D003492 ORTHO05D022499 5.5e-39 168.3 228 41.2
Cc02_g06290 Coffea canephora HOM05D003492 ORTHO05D005115 3.0e-37 162.5 101 75.2
Psat2g065680 Pisum sativum HOM05D003492 ORTHO05D005115 4.4e-36 158.7 122 62.3
Lj8C65T9 Lonicera japonica HOM05D003492 ORTHO05D019467 1.8e-34 153.3 130 60.8
SEGI_23081 Sequoiadendron giganteum HOM05D003492 ORTHO05D019467 1.2e-33 150.6 200 39.5
MBI08_g18764_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 2.5e-31 142.9 170 47.1
CAN.G78.72 Capsicum annuum HOM05D003492 ORTHO05D019467 7.2e-31 141.4 162 46.3
HPP92_012037 Vanilla planifolia HOM05D003492 ORTHO05D005115 3.6e-30 139.0 155 47.7
CAN.G78.73 Capsicum annuum HOM05D003492 ORTHO05D005115 2.6e-28 132.9 300 31.7
Lsat_1_v5_gn_4_75100 Lactuca sativa HOM05D003492 ORTHO05D016080 5.7e-28 131.7 99 63.6
SEGI_03313 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 4.8e-27 128.6 216 37.0
Rhsim10G0095400 Rhododendron simsii HOM05D003492 ORTHO05D005115 1.1e-26 127.5 103 60.2
Lsat_1_v5_gn_1_82880 Lactuca sativa HOM05D003492 ORTHO05D005115 1.8e-26 126.7 109 63.3
MBI12_g24829_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D011152 5.4e-26 125.2 164 45.7
Actinidia00955 Actinidia chinensis HOM05D003492 ORTHO05D019467 9.1e-26 124.4 108 58.3
SHI03333 Sapria himalayana HOM05D003492 ORTHO05D005115 2.7e-25 122.9 181 41.4
Psat7g097320 Pisum sativum HOM05D003492 ORTHO05D024801 5.9e-25 121.7 102 59.8
CAN.G1193.2 Capsicum annuum HOM05D003492 ORTHO05D019467 1.1e-23 117.5 127 48.0
SHI03336 Sapria himalayana HOM05D003492 ORTHO05D005115 3.0e-21 109.4 141 43.3
Actinidia03517 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.5e-20 107.1 54 81.5
BcaB01g05927 Brassica carinata HOM05D003492 ORTHO05D016080 3.4e-20 105.9 122 50.8
Lsat_1_v5_gn_9_80501 Lactuca sativa HOM05D003662 ORTHO05D001824 1.1e-18 100.9 144 48.6
Lj8A65T40 Lonicera japonica HOM05D003492 ORTHO05D005115 2.4e-18 99.8 74 62.2
DCAR_011824 Daucus carota HOM05D003492 ORTHO05D005115 9.2e-18 97.8 76 61.8
Psat4g081200 Pisum sativum HOM05D003492 ORTHO05D000696 1.6e-17 97.1 94 48.9
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 4.5e-17 95.5 86 51.2
Lsat_1_v5_gn_7_99341 Lactuca sativa HOM05D003492 ORTHO05D016080 7.8e-17 94.7 141 40.4
SHI03335 Sapria himalayana HOM05D003492 ORTHO05D005115 7.8e-17 94.7 86 51.2
CAN.G78.69 Capsicum annuum HOM05D003492 ORTHO05D024801 1.2e-14 87.4 71 63.4
GSVIVG01034775001 Vitis vinifera HOM05D003492 ORTHO05D035223 1.6e-14 87.0 58 75.9
Actinidia02211 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.3e-11 77.4 102 44.1
Potri.010G187201 Populus trichocarpa HOM05D003492 ORTHO05D019467 4.9e-11 75.5 62 54.8
SHI03338 Sapria himalayana HOM05D003492 ORTHO05D005115 1.0e-08 67.8 71 46.5
MBI18_g01105_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 1.7e-08 67.0 61 59.0
Sabra10G0144400 Salix brachista HOM05D003492 ORTHO05D019467 2.3e-08 66.6 129 35.7
CAN.G3101.1 Capsicum annuum HOM05D003492 ORTHO05D005115 2.5e-07 63.2 71 49.3
HanXRQChr15g0464841 Helianthus annuus HOM05D003492 ORTHO05D005115 5.6e-07 62.0 75 49.3


User provided reference genes

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