Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C026595.2 Cucumis melo HOM05D005949 ORTHO05D006945 1.4e-178 629.8 378 100.0
CsaV3_3G042930 Cucumis sativus L. HOM05D000631 ORTHO05D000524 4.3e-164 581.6 378 92.9
Sed0011104 Sechium edule HOM05D005949 ORTHO05D006945 3.1e-154 548.9 373 88.7
ClCG10G013730 Citrullus lanatus HOM05D005949 ORTHO05D006945 3.9e-149 531.9 374 83.7
Manes.17G110300 Manihot esculenta HOM05D005949 ORTHO05D006945 1.1e-135 487.3 377 64.2
Cfa007328 Carpinus fangiana HOM05D005949 ORTHO05D006945 6.6e-133 478.0 374 70.9
CiPaw.03G046600 Carya illinoinensis HOM05D005949 ORTHO05D006945 9.6e-132 474.2 373 77.7
Nn2g12389 Nelumbo nucifera HOM05D005949 ORTHO05D006945 9.6e-132 474.2 376 72.3
Haze_14768 Corylus avellana HOM05D005949 ORTHO05D006945 2.8e-131 472.6 385 68.3
GSVIVG01032367001 Vitis vinifera HOM05D005949 ORTHO05D006945 8.1e-131 471.1 373 71.3
TAR374G0398 Trochodendron aralioides HOM05D005949 ORTHO05D006945 1.2e-126 457.2 376 60.6
CSS0029670 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 3.9e-125 452.2 373 60.1
CANSAT64G2213 Cannabis sativa HOM05D005949 ORTHO05D006945 6.6e-125 451.4 379 66.8
QL02p073821 Quercus lobata HOM05D005949 ORTHO05D006945 6.6e-125 451.4 373 68.6
Ciclev10015245m.g Citrus clementina HOM05D005949 ORTHO05D006945 2.5e-124 449.5 377 60.7
Nitab4.5_0006683g0100 Nicotiana tabacum HOM05D005949 ORTHO05D006945 3.3e-124 449.1 374 60.2
MSTRG.15541 Avicennia marina HOM05D005949 ORTHO05D006945 4.3e-124 448.7 373 58.7
Glyma.19G052100 Glycine max HOM05D005949 ORTHO05D006945 2.1e-123 446.4 373 68.9
Nitab4.5_0001562g0070 Nicotiana tabacum HOM05D005949 ORTHO05D006945 2.1e-123 446.4 373 59.8
Glyma.05G115200 Glycine max HOM05D005949 ORTHO05D006945 3.6e-123 445.7 373 67.6
Eucgr.J02262 Eucalyptus grandis HOM05D005949 ORTHO05D006945 4.8e-123 445.3 373 65.7
Phvul.004G060400 Phaseolus vulgaris HOM05D005949 ORTHO05D006945 8.1e-123 444.5 373 64.6
CAN.G1235.24 Capsicum annuum HOM05D005949 ORTHO05D006945 4.0e-122 442.2 380 58.4
Atru.chr6.2442 Acer truncatum HOM05D005949 ORTHO05D006945 2.0e-121 439.9 354 65.8
COL.COLO4_29188 Corchorus olitorius HOM05D005949 ORTHO05D006945 5.8e-121 438.3 373 66.0
RhsimUnG0006400 Rhododendron simsii HOM05D005949 ORTHO05D006945 5.8e-121 438.3 372 57.8
RhsimUnG0087200 Rhododendron simsii HOM05D005949 ORTHO05D006945 5.8e-121 438.3 372 57.8
Lj7C602T3 Lonicera japonica HOM05D005949 ORTHO05D006945 1.1e-119 434.1 401 55.9
RcHm_v2.0_Chr2g0173461 Rosa chinensis HOM05D005949 ORTHO05D006945 4.2e-119 432.2 376 72.3
Duzib264G1167 Durio zibethinus HOM05D005949 ORTHO05D006945 5.4e-119 431.8 373 59.0
VMungo0464G1442 Vigna mungo HOM05D005949 ORTHO05D006945 5.4e-119 431.8 373 67.8
Migut.K01417 Erythranthe guttata HOM05D005949 ORTHO05D006945 7.1e-119 431.4 373 70.5
Lalb_Chr06g0174481 Lupinus albus HOM05D005949 ORTHO05D006945 7.1e-119 431.4 374 68.2
Aqoxy5G03678 Aquilegia oxysepala HOM05D005949 ORTHO05D006945 1.6e-118 430.3 376 58.5
FAN09G2334 Fragaria x ananassa HOM05D005949 ORTHO05D006945 1.6e-118 430.3 376 58.0
FAN05G2654 Fragaria x ananassa HOM05D005949 ORTHO05D006945 2.1e-118 429.9 377 71.9
PGSC0003DMG400018653 Solanum tuberosum HOM05D005949 ORTHO05D006945 4.6e-118 428.7 374 57.8
Sopen01g054070 Solanum pennellii HOM05D005949 ORTHO05D006945 3.0e-117 426.0 374 57.2
FvH4_6g51990 Fragaria vesca HOM05D005949 ORTHO05D006945 5.1e-117 425.2 377 71.4
ATR0199G040 Amborella trichopoda HOM05D005949 ORTHO05D006945 1.1e-116 424.1 373 64.6
Solyc01g112020.3 Solanum lycopersicum HOM05D005949 ORTHO05D006945 1.5e-116 423.7 374 57.2
MD17G1021300 Malus domestica HOM05D005949 ORTHO05D006945 3.3e-116 422.5 376 70.2
MD09G1021300 Malus domestica HOM05D005949 ORTHO05D006945 2.8e-115 419.5 377 69.5
Lj2g0004695 Lotus japonicus HOM05D005949 ORTHO05D006945 6.2e-115 418.3 374 70.1
FAN02G3213 Fragaria x ananassa HOM05D005949 ORTHO05D006945 1.8e-114 416.8 377 70.0
FAN14G1023 Fragaria x ananassa HOM05D005949 ORTHO05D006945 1.8e-114 416.8 377 70.6
Ca_04380_v3 Cicer arietinum L. HOM05D005949 ORTHO05D006945 3.1e-114 416.0 375 60.5
HanXRQChr15g0486811 Helianthus annuus HOM05D005949 ORTHO05D006945 3.1e-114 416.0 373 55.0
Thecc.04G021200 Theobroma cacao HOM05D005949 ORTHO05D006945 3.1e-114 416.0 372 64.0
Lsat_1_v5_gn_4_184520 Lactuca sativa HOM05D005949 ORTHO05D006945 1.5e-113 413.7 373 55.5
Medtr6g021740 Medicago truncatula HOM05D005949 ORTHO05D006945 2.0e-113 413.3 372 60.8
Gorai.011G094000 Gossypium raimondii HOM05D005949 ORTHO05D006945 3.4e-113 412.5 373 64.3
Gohir.D10G085800 Gossypium hirsutum HOM05D005949 ORTHO05D006945 1.3e-112 410.6 373 64.1
Prupe.3G295200 Prunus persica HOM05D005949 ORTHO05D006945 2.9e-112 409.5 376 69.9
TPR.G16864 Trifolium pratense HOM05D005949 ORTHO05D006945 4.9e-112 408.7 372 61.0
ECA232G4961 Erigeron canadensis HOM05D005949 ORTHO05D006945 3.2e-111 406.0 373 53.9
PGR083G1217 Punica granatum HOM05D005949 ORTHO05D006945 1.6e-110 403.7 373 61.4
TPR.G8694 Trifolium pratense HOM05D005949 ORTHO05D006945 1.6e-110 403.7 372 60.8
Gohir.A10G101600 Gossypium hirsutum HOM05D005949 ORTHO05D006945 2.1e-110 403.3 373 63.3
SGA_v2.0_scaffold47G17523 Striga asiatica HOM05D005949 ORTHO05D006945 4.6e-110 402.1 373 53.4
TWI12G1469 Tripterygium wilfordii HOM05D005949 ORTHO05D006945 3.0e-109 399.4 371 63.1
THA.LOC104819734 Tarenaya hassleriana HOM05D005949 ORTHO05D006945 1.1e-108 397.5 373 66.2
PSO063G1157 Papaver somniferum HOM05D005949 ORTHO05D006945 1.9e-108 396.7 371 55.5
AUR62028447 Chenopodium quinoa HOM05D005949 ORTHO05D006945 4.3e-108 395.6 352 56.2
Cc09_g05780 Coffea canephora HOM05D005949 ORTHO05D006945 3.7e-107 392.5 371 67.9
PSO754G0010 Papaver somniferum HOM05D005949 ORTHO05D006945 8.1e-107 391.3 371 55.3
arahy.Tifrunner.gnm1.ann1.4A4JE9 Arachis hypogaea HOM05D005949 ORTHO05D006945 9.0e-106 387.9 373 65.4
Carub.0007s0438 Capsella rubella HOM05D005949 ORTHO05D006945 1.5e-105 387.1 373 63.5
Psat5g064960 Pisum sativum HOM05D005949 ORTHO05D006945 4.5e-105 385.6 279 64.2
arahy.Tifrunner.gnm1.ann1.BK7H4N Arachis hypogaea HOM05D005949 ORTHO05D006945 1.7e-104 383.6 392 63.0
CARHR244220 Cardamine hirsuta HOM05D005949 ORTHO05D006945 2.2e-104 383.3 373 64.6
AUR62043287 Chenopodium quinoa HOM05D005949 ORTHO05D006945 2.2e-104 383.3 337 56.7
Thhalv10025194m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 2.2e-104 383.3 376 62.8
AT4G35850 Arabidopsis thaliana HOM05D005949 ORTHO05D006945 3.8e-104 382.5 373 63.0
AL7G15220 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 4.9e-104 382.1 373 62.5
unitig_88.g27782 Utricularia gibba HOM05D005949 ORTHO05D006945 8.4e-104 381.3 278 65.1
Aa31LG6G12800 Aethionema arabicum HOM05D005949 ORTHO05D006945 3.2e-103 379.4 373 64.6
C01p03190 Brassica napus HOM05D005949 ORTHO05D006945 9.3e-103 377.9 373 61.7
BraA01t00268Z Brassica rapa HOM05D005949 ORTHO05D006945 9.3e-103 377.9 373 61.4
A01p02870 Brassica napus HOM05D005949 ORTHO05D006945 2.7e-102 376.3 373 60.9
Peaxi162Scf00420g00016 Petunia axillaris HOM05D005949 ORTHO05D006945 3.5e-102 375.9 374 53.5
BolC1t00304H Brassica oleracea HOM05D005949 ORTHO05D006945 6.0e-102 375.2 373 60.9
EL10Ac6g14123 Beta vulgaris HOM05D005949 ORTHO05D006945 1.8e-101 373.6 425 47.1
BcaNung04881 Brassica carinata HOM05D005949 ORTHO05D006945 1.8e-101 373.6 373 62.5
Potri.001G341400 Populus trichocarpa HOM05D005949 ORTHO05D006945 4.8e-99 365.5 374 64.7
BcaNung00787 Brassica carinata HOM05D005949 ORTHO05D006945 6.9e-98 361.7 373 49.3
HPP92_016937 Vanilla planifolia HOM05D005949 ORTHO05D006945 9.0e-98 361.3 376 51.9
SHI03792 Sapria himalayana HOM05D005949 ORTHO05D006945 1.2e-97 360.9 252 67.5
Sabra16G0221400 Salix brachista HOM05D005949 ORTHO05D006945 1.5e-97 360.5 363 65.6
Ah.02g128260 Amaranthus hybridus HOM05D005949 ORTHO05D006945 1.7e-96 357.1 380 48.9
Zm00001eb354320 Zea mays HOM05D005949 ORTHO05D006945 5.0e-96 355.5 380 63.9
SEGI_30195 Sequoiadendron giganteum HOM05D005949 ORTHO05D006945 4.2e-95 352.4 359 64.6
Os05g0145600 Oryza sativa ssp. japonica HOM05D005949 ORTHO05D006945 2.7e-94 349.7 377 64.5
CSS0002019 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 2.8e-91 339.7 275 60.4
DCAR_021740 Daucus carota HOM05D005949 ORTHO05D006945 1.9e-87 327.0 374 46.5
Sc09g0007150 Simmondsia chinensis HOM05D005949 ORTHO05D006945 6.1e-86 322.0 303 58.4
Thhalv10023015m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 7.9e-86 321.6 373 55.2
Dinv25719 Davidia involucrata HOM05D005949 ORTHO05D006945 2.2e-80 303.5 264 64.8
Actinidia36133 Actinidia chinensis HOM05D005949 ORTHO05D006945 4.0e-69 266.2 244 75.0
Duzib147G0933 Durio zibethinus HOM05D005949 ORTHO05D006945 1.6e-65 254.2 337 43.0
vmacro05885 Vaccinium macrocarpon HOM05D005949 ORTHO05D006945 5.0e-64 249.2 252 52.4
CSS0020931 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 1.2e-57 228.0 159 66.7
CDE04G3569 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 3.0e-53 213.4 264 52.3
SMO201G0168 Selaginella moellendorffii HOM05D005949 ORTHO05D006945 4.9e-51 206.1 363 46.6
Cpa.g.sc130.71 Carica papaya HOM05D005949 ORTHO05D006945 2.7e-49 200.3 209 68.9
AL7G15200 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 2.8e-46 190.3 230 43.5
Mapoly0062s0069 Marchantia polymorpha HOM05D005949 ORTHO05D006945 1.0e-45 188.3 376 38.6
Pp3c1_21850 Physcomitrium patens HOM05D005949 ORTHO05D006945 2.6e-44 183.7 358 45.3
CBR_g20407 Chara braunii HOM05D005949 ORTHO05D006945 6.4e-43 179.1 364 42.0
CBR_g20410 Chara braunii HOM05D005949 ORTHO05D006945 6.4e-43 179.1 364 42.6
Actinidia36134 Actinidia chinensis HOM05D005949 ORTHO05D006945 2.5e-39 167.2 112 67.0
Pp3c14_7210 Physcomitrium patens HOM05D005949 ORTHO05D006945 3.3e-39 166.8 371 41.8
Sc07g0004380 Simmondsia chinensis HOM05D005949 ORTHO05D006945 5.6e-39 166.0 144 56.9
MBI10_g37260_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 2.1e-38 164.1 212 59.0
MBI10_g15883_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 6.8e-37 159.1 206 46.6
MD09G1021100 Malus domestica HOM05D005949 ORTHO05D006945 4.4e-36 156.4 114 61.4
AagrBONN_evm.TU.Sc2ySwM_117.2156 Anthoceros agrestis HOM05D005949 ORTHO05D006945 3.7e-35 153.3 364 42.0
Psat1g081680 Pisum sativum HOM05D005949 ORTHO05D006945 1.2e-33 148.3 103 63.1
CAN.G370.99 Capsicum annuum HOM05D000140 ORTHO05D000087 2.7e-33 147.1 111 61.3
Zm00001eb120940 Zea mays HOM05D005949 ORTHO05D006945 1.6e-30 137.9 132 54.5
Hma1.2p1_0818F.1_g223360 Hydrangea macrophylla HOM05D005949 ORTHO05D006945 3.6e-30 136.7 103 64.1
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 6.4e-27 125.9 193 43.5
Psat1g081720 Pisum sativum HOM05D005949 ORTHO05D006945 4.1e-26 123.2 183 39.9
Sp7g33630 Schrenkiella parvula HOM05D005949 ORTHO05D006945 5.4e-26 122.9 112 55.4
CDE04G3731 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 1.2e-14 85.1 61 65.6
Cpa.g.sc130.69 Carica papaya HOM05D005949 ORTHO05D006945 1.4e-13 81.6 68 60.3
CAN.G15.16 Capsicum annuum HOM05D005949 ORTHO05D006945 1.5e-12 78.2 57 61.4
CAN.G479.6 Capsicum annuum HOM05D005949 ORTHO05D006945 5.8e-12 76.3 169 32.5
Sc07g0004370 Simmondsia chinensis HOM05D005949 ORTHO05D006945 7.6e-12 75.9 65 56.9
SHI03793 Sapria himalayana HOM05D005949 ORTHO05D006945 9.3e-10 68.9 42 73.8
CAN.G1258.4 Capsicum annuum HOM05D005949 ORTHO05D006945 2.7e-09 67.4 38 78.9
CAN.G2149.1 Capsicum annuum HOM05D001265 ORTHO05D006945 7.8e-09 65.9 38 76.3
MBI07_g20478_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D001968 7.8e-09 65.9 49 65.3
CAN.G898.5 Capsicum annuum HOM05D005949 ORTHO05D006945 5.1e-08 63.2 38 73.7
CAN.G1086.1 Capsicum annuum HOM05D005949 ORTHO05D006945 2.5e-07 60.8 40 70.0
CAN.G1258.5 Capsicum annuum HOM05D005949 ORTHO05D006945 8.1e-06 55.8 35 71.4


User provided reference genes

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