Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C026499.2 Cucumis melo HOM05D006778 ORTHO05D008341 4.8e-70 267.7 134 100.0
CsaV3_6G036140 Cucumis sativus L. HOM05D006778 ORTHO05D008341 2.7e-65 251.9 134 94.0
ClCG07G001620 Citrullus lanatus HOM05D006778 ORTHO05D008341 2.1e-57 225.7 133 84.2
Sed0012724 Sechium edule HOM05D006778 ORTHO05D008341 9.8e-55 216.9 134 82.1
Manes.12G043800 Manihot esculenta HOM05D006778 ORTHO05D008341 4.7e-41 171.4 134 65.7
Glyma.13G130200 Glycine max HOM05D006778 ORTHO05D008341 3.2e-37 158.7 133 57.9
Glyma.10G042900 Glycine max HOM05D006778 ORTHO05D008341 5.4e-37 157.9 132 59.8
SGA_v2.0_scaffold8G04666 Striga asiatica HOM05D006778 ORTHO05D008341 7.8e-36 154.1 131 58.0
Prupe.8G209000 Prunus persica HOM05D006778 ORTHO05D008341 1.3e-35 153.3 134 60.4
CiPaw.03G152900 Carya illinoinensis HOM05D006778 ORTHO05D008341 2.3e-35 152.5 132 62.1
FAN15G2222 Fragaria x ananassa HOM05D006778 ORTHO05D008341 2.3e-35 152.5 132 58.3
Lj3g0024250 Lotus japonicus HOM05D006778 ORTHO05D008341 5.0e-35 151.4 129 59.7
Actinidia37573 Actinidia chinensis HOM05D006778 ORTHO05D008341 6.6e-35 151.0 132 59.1
Migut.D00505 Erythranthe guttata HOM05D006778 ORTHO05D008341 8.6e-35 150.6 136 55.1
RcHm_v2.0_Chr6g0285481 Rosa chinensis HOM05D006778 ORTHO05D008341 8.6e-35 150.6 142 57.0
Sabra02G0191900 Salix brachista HOM05D006778 ORTHO05D008341 1.1e-34 150.2 135 62.2
Nitab4.5_0001740g0070 Nicotiana tabacum HOM05D006778 ORTHO05D008341 1.9e-34 149.4 139 55.4
Nitab4.5_0003180g0010 Nicotiana tabacum HOM05D006778 ORTHO05D008341 3.3e-34 148.7 139 54.7
Lalb_Chr21g0314231 Lupinus albus HOM05D006778 ORTHO05D008341 9.5e-34 147.1 134 56.7
GSVIVG01028519001 Vitis vinifera HOM05D006778 ORTHO05D008341 1.2e-33 146.7 132 59.1
FvH4_2g19780 Fragaria vesca HOM05D006778 ORTHO05D008341 2.1e-33 146.0 145 52.4
CAN.G941.43 Capsicum annuum HOM05D006778 ORTHO05D008341 2.8e-33 145.6 137 56.2
Cfa002523 Carpinus fangiana HOM05D006778 ORTHO05D008341 2.8e-33 145.6 126 60.3
Lj5g0022938 Lotus japonicus HOM05D006778 ORTHO05D008341 4.7e-33 144.8 132 57.6
arahy.Tifrunner.gnm1.ann1.01AYHN Arachis hypogaea HOM05D006778 ORTHO05D008341 6.2e-33 144.4 133 51.9
THA.LOC104820057 Tarenaya hassleriana HOM05D006778 ORTHO05D008341 6.2e-33 144.4 134 56.7
MD05G1182200 Malus domestica HOM05D006778 ORTHO05D008341 1.0e-32 143.7 134 56.7
arahy.Tifrunner.gnm1.ann1.PE83GC Arachis hypogaea HOM05D006778 ORTHO05D008341 1.4e-32 143.3 133 51.9
CANSAT01G2408 Cannabis sativa HOM05D006778 ORTHO05D008341 2.3e-32 142.5 151 49.0
CANSAT01G3118 Cannabis sativa HOM05D006778 ORTHO05D008341 2.3e-32 142.5 151 49.0
Solyc06g008020.3 Solanum lycopersicum HOM05D006778 ORTHO05D008341 2.3e-32 142.5 139 54.7
Potri.002G252700 Populus trichocarpa HOM05D006778 ORTHO05D008341 4.0e-32 141.7 130 60.8
CiPaw.04G108200 Carya illinoinensis HOM05D006778 ORTHO05D008341 5.2e-32 141.4 161 49.7
Cc01_g17420 Coffea canephora HOM05D006778 ORTHO05D008341 5.2e-32 141.4 132 57.6
TAR362G0656 Trochodendron aralioides HOM05D006778 ORTHO05D008341 6.8e-32 141.0 130 58.5
Phvul.007G156300 Phaseolus vulgaris HOM05D006778 ORTHO05D008341 8.9e-32 140.6 132 57.6
Rhsim13G0042100 Rhododendron simsii HOM05D006778 ORTHO05D008341 2.0e-31 139.4 135 56.3
ECA247G0226 Erigeron canadensis HOM05D000070 ORTHO05D003190 3.4e-31 138.7 131 55.7
FAN24G1005 Fragaria x ananassa HOM05D006778 ORTHO05D008341 2.9e-30 135.6 146 50.7
Nn1g03098 Nelumbo nucifera HOM05D006778 ORTHO05D008341 3.2e-29 132.1 146 50.0
PGR044G1830 Punica granatum HOM05D006778 ORTHO05D008341 3.2e-29 132.1 129 51.2
Sopen06g002860 Solanum pennellii HOM05D006778 ORTHO05D008341 4.1e-29 131.7 139 51.8
Psat6g064720 Pisum sativum HOM05D006778 ORTHO05D008341 9.2e-29 130.6 147 46.9
BcaNung01362 Brassica carinata HOM05D006778 ORTHO05D008341 1.2e-28 130.2 160 48.8
Cpa.g.sc8.198 Carica papaya HOM05D006778 ORTHO05D008341 1.2e-28 130.2 131 54.2
QL07p037469 Quercus lobata HOM05D006778 ORTHO05D008341 1.2e-28 130.2 168 47.6
Medtr1g069150 Medicago truncatula HOM05D006778 ORTHO05D008341 1.6e-28 129.8 148 49.3
DCAR_012626 Daucus carota HOM05D006778 ORTHO05D008341 2.7e-28 129.0 148 48.6
Sed0026958 Sechium edule HOM05D006778 ORTHO05D008341 4.6e-28 128.3 77 85.7
TPR.G33801 Trifolium pratense HOM05D006778 ORTHO05D008341 4.6e-28 128.3 146 48.6
BcaC09g51658 Brassica carinata HOM05D006778 ORTHO05D008341 3.0e-27 125.6 161 47.2
Sp7g26820 Schrenkiella parvula HOM05D006778 ORTHO05D008341 5.0e-27 124.8 161 49.1
PGR044G0410 Punica granatum HOM05D006778 ORTHO05D008341 4.3e-26 121.7 128 47.7
EL10Ac7g17819 Beta vulgaris HOM05D006778 ORTHO05D008341 5.6e-26 121.3 141 45.4
Thecc.01G232400 Theobroma cacao HOM05D006778 ORTHO05D008341 5.6e-26 121.3 169 44.4
Thhalv10026155m.g Eutrema salsugineum HOM05D006778 ORTHO05D008341 7.3e-26 120.9 167 45.5
Pp3c19_5220 Physcomitrium patens HOM05D006778 ORTHO05D008341 9.5e-26 120.6 138 45.7
CARHR236610 Cardamine hirsuta HOM05D006778 ORTHO05D008341 2.8e-25 119.0 164 45.7
Gohir.D08G211201 Gossypium hirsutum HOM05D006778 ORTHO05D008341 2.8e-25 119.0 156 45.5
AUR62031811 Chenopodium quinoa HOM05D006778 ORTHO05D008341 3.6e-25 118.6 163 40.5
ATR0787G018 Amborella trichopoda HOM05D006778 ORTHO05D008341 4.7e-25 118.2 132 49.2
Mapoly0102s0014 Marchantia polymorpha HOM05D006778 ORTHO05D008341 4.7e-25 118.2 138 47.8
vmacro02733 Vaccinium macrocarpon HOM05D006778 ORTHO05D008341 1.1e-24 117.1 158 44.9
HPP92_014070 Vanilla planifolia HOM05D006778 ORTHO05D008341 2.3e-24 115.9 135 48.9
COL.COLO4_28579 Corchorus olitorius HOM05D006778 ORTHO05D008341 3.1e-24 115.5 154 44.8
Duzib133G1327 Durio zibethinus HOM05D006778 ORTHO05D008341 3.1e-24 115.5 168 41.7
Gohir.A08G193200 Gossypium hirsutum HOM05D006778 ORTHO05D008341 3.1e-24 115.5 164 42.7
Aqoxy2G03836 Aquilegia oxysepala HOM05D006778 ORTHO05D008341 1.5e-23 113.2 132 47.0
AT4G28820 Arabidopsis thaliana HOM05D006778 ORTHO05D008341 1.5e-23 113.2 164 45.1
Gorai.004G223900 Gossypium raimondii HOM05D006778 ORTHO05D008341 1.5e-23 113.2 170 42.4
Carub.0007s1182 Capsella rubella HOM05D006778 ORTHO05D008341 2.0e-23 112.8 164 43.3
TWI14G0487 Tripterygium wilfordii HOM05D006778 ORTHO05D008341 1.7e-22 109.8 186 41.4
CDE06G1811 Ceratophyllum demersum HOM05D006778 ORTHO05D008341 2.2e-22 109.4 151 39.7
A01p09090 Brassica napus HOM05D006778 ORTHO05D008341 5.4e-21 104.8 172 42.4
Haze_24755 Corylus avellana HOM05D006778 ORTHO05D008341 9.2e-21 104.0 85 58.8
Haze_24757 Corylus avellana HOM05D006778 ORTHO05D008341 9.2e-21 104.0 85 58.8
BolC1t01026H Brassica oleracea HOM05D006778 ORTHO05D008341 1.6e-20 103.2 176 39.8
Dinv19236 Davidia involucrata HOM05D006778 ORTHO05D008341 2.1e-20 102.8 135 42.2
CDE07G0370 Ceratophyllum demersum HOM05D006778 ORTHO05D008341 2.7e-20 102.4 132 42.4
CSS0042066 Camellia sinensis var. sinensis HOM05D006778 ORTHO05D008341 3.5e-20 102.1 144 43.8
CBR_g29688 Chara braunii HOM05D006778 ORTHO05D008341 7.8e-20 100.9 136 40.4
AagrBONN_evm.TU.Sc2ySwM_228.3325 Anthoceros agrestis HOM05D006778 ORTHO05D008341 1.3e-19 100.1 133 44.4
PGSC0003DMG400014691 Solanum tuberosum HOM05D006778 ORTHO05D008341 1.7e-19 99.8 119 48.7
SMO111G0074 Selaginella moellendorffii HOM05D006778 ORTHO05D008341 3.9e-19 98.6 138 41.3
AL7G23670 Arabidopsis lyrata HOM05D006778 ORTHO05D008341 6.6e-19 97.8 196 38.3
C01p10640 Brassica napus HOM05D006778 ORTHO05D008341 6.6e-19 97.8 173 38.7
BolC7t46124H Brassica oleracea HOM05D006778 ORTHO05D008341 7.3e-18 94.4 197 35.0
BraA01t00857Z Brassica rapa HOM05D006778 ORTHO05D008341 7.3e-18 94.4 173 35.8
C07p56450 Brassica napus HOM05D006778 ORTHO05D008341 1.4e-16 90.1 197 33.5
Zm00001eb149030 Zea mays HOM05D006778 ORTHO05D008341 1.8e-16 89.7 132 37.9
MSTRG.18371 Avicennia marina HOM05D006778 ORTHO05D008341 8.9e-16 87.4 135 37.8
AagrBONN_evm.TU.Sc2ySwM_368.1574 Anthoceros agrestis HOM05D006778 ORTHO05D008341 4.4e-15 85.1 104 46.2
VMungo0720G2677 Vigna mungo HOM05D006778 ORTHO05D008341 7.6e-15 84.3 98 48.0
A03p58430 Brassica napus HOM05D006778 ORTHO05D008341 4.9e-14 81.6 187 34.8
Atru.chr5.1931 Acer truncatum HOM05D006778 ORTHO05D008341 2.4e-13 79.3 99 49.5
Aa31LG2G21570 Aethionema arabicum HOM05D006778 ORTHO05D008341 3.2e-13 79.0 161 37.3
Lsat_1_v5_gn_9_11140 Lactuca sativa HOM05D006778 ORTHO05D008341 9.2e-13 77.4 97 47.4
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 9.2e-13 77.4 136 33.8
Peaxi162Scf00499g00413 Petunia axillaris HOM05D006778 ORTHO05D008341 9.2e-13 77.4 99 43.4
AUR62008897 Chenopodium quinoa HOM05D006778 ORTHO05D008341 1.2e-12 77.0 141 34.0
Hma1.2p1_1858F.1_g305520 Hydrangea macrophylla HOM05D006778 ORTHO05D008341 4.6e-12 75.1 48 64.6
Sc17g0002480 Simmondsia chinensis HOM05D006778 ORTHO05D008341 7.8e-12 74.3 95 46.3
Ca_09622_v3 Cicer arietinum L. HOM05D006778 ORTHO05D008341 1.0e-11 73.9 108 42.6
Actinidia30101 Actinidia chinensis HOM05D006778 ORTHO05D008341 6.6e-11 71.2 77 50.6
unitig_749.g13722 Utricularia gibba HOM05D006778 ORTHO05D008341 3.3e-10 68.9 91 45.1
MD10G1170500 Malus domestica HOM05D006778 ORTHO05D008341 5.6e-10 68.2 128 37.5
Hund05528 Selenicereus undatus HOM05D006778 ORTHO05D008341 9.6e-10 67.4 124 39.5
SEGI_27672 Sequoiadendron giganteum HOM05D006778 ORTHO05D008341 1.1e-08 63.9 52 65.4
SalBow4G2567 Salvia bowleyana HOM05D006778 ORTHO05D008341 8.9e-08 60.8 52 59.6
Gohir.A05G416601 Gossypium hirsutum HOM05D006778 ORTHO05D008341 1.5e-07 60.1 77 48.1
Gohir.A05G417001 Gossypium hirsutum HOM05D006778 ORTHO05D008341 1.5e-07 60.1 77 48.1
Gorai.012G000200 Gossypium raimondii HOM05D006778 ORTHO05D008341 1.5e-07 60.1 77 48.1
Gohir.D08G007200 Gossypium hirsutum HOM05D006778 ORTHO05D008341 4.4e-07 58.5 77 48.1
MBI11_g20194_MAGBIO Magnolia biondii HOM05D006778 ORTHO05D008341 2.2e-06 56.2 52 57.7


User provided reference genes

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