Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C026213.2 Cucumis melo HOM05D004813 ORTHO05D005889 1.5e-263 912.5 552 100.0
CsaV3_1G000640 Cucumis sativus L. HOM05D004813 ORTHO05D005889 1.3e-249 866.3 555 94.6
ClCG06G017810 Citrullus lanatus HOM05D004813 ORTHO05D005889 1.5e-213 746.5 670 74.9
Sed0018710 Sechium edule HOM05D004813 ORTHO05D005889 9.5e-205 717.2 561 82.7
Dinv20637 Davidia involucrata HOM05D004813 ORTHO05D005889 1.4e-152 543.9 552 64.7
Nn4g22713 Nelumbo nucifera HOM05D004813 ORTHO05D005889 2.1e-151 540.0 547 65.6
Cc04_g12130 Coffea canephora HOM05D004813 ORTHO05D005889 1.3e-148 530.8 560 63.4
CSS0044871 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 9.0e-147 524.6 546 62.3
CSS0009747 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 2.0e-146 523.5 546 63.7
TAR629G2765 Trochodendron aralioides HOM05D004813 ORTHO05D005889 2.7e-143 513.1 524 65.1
Cfa019150 Carpinus fangiana HOM05D004813 ORTHO05D005889 4.6e-143 512.3 527 57.9
Ciclev10019513m.g Citrus clementina HOM05D004813 ORTHO05D005889 3.9e-142 509.2 556 60.4
Potri.012G082600 Populus trichocarpa HOM05D004813 ORTHO05D005889 1.9e-141 506.9 548 60.9
Manes.14G064300 Manihot esculenta HOM05D004813 ORTHO05D005889 2.5e-141 506.5 550 60.5
Nitab4.5_0000514g0060 Nicotiana tabacum HOM05D004813 ORTHO05D005889 3.3e-141 506.1 536 64.0
Thecc.03G014500 Theobroma cacao HOM05D004813 ORTHO05D005889 1.1e-139 501.1 562 62.6
Cpa.g.sc76.31 Carica papaya HOM05D004813 ORTHO05D005889 1.8e-139 500.4 522 64.4
TWI14G0980 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 1.2e-138 497.7 582 59.1
Eucgr.K02829 Eucalyptus grandis HOM05D004813 ORTHO05D005889 1.5e-138 497.3 588 62.1
MBI16_g39216_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 5.9e-138 495.4 550 60.7
MD06G1172400 Malus domestica HOM05D004813 ORTHO05D005889 1.7e-137 493.8 528 64.8
MBI17_g17505_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 2.2e-137 493.4 536 65.5
Gorai.008G296300 Gossypium raimondii HOM05D004813 ORTHO05D005889 1.1e-136 491.1 563 62.3
PGR044G0958 Punica granatum HOM05D004813 ORTHO05D005889 1.1e-136 491.1 559 61.7
CiPaw.11G024600 Carya illinoinensis HOM05D004813 ORTHO05D005889 1.4e-136 490.7 547 62.7
MD14G1178200 Malus domestica HOM05D004813 ORTHO05D005889 4.2e-136 489.2 526 63.3
TWI23G0210 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 7.2e-136 488.4 568 60.4
Gohir.D12G275800 Gossypium hirsutum HOM05D004813 ORTHO05D005889 1.6e-135 487.3 563 62.7
MBI16_g37492_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 3.6e-135 486.1 542 63.8
Sabra15G0103000 Salix brachista HOM05D004813 ORTHO05D005889 4.6e-135 485.7 554 61.7
Oeu016404.1 Olea europaea HOM05D004813 ORTHO05D005889 6.1e-135 485.3 561 59.5
Haze_07517 Corylus avellana HOM05D004813 ORTHO05D005889 1.8e-134 483.8 561 62.4
Peaxi162Scf00089g01844 Petunia axillaris HOM05D004813 ORTHO05D005889 3.0e-134 483.0 544 59.0
CANSAT80G1068 Cannabis sativa HOM05D004813 ORTHO05D005889 3.9e-134 482.6 551 63.0
Prupe.5G171700 Prunus persica HOM05D004813 ORTHO05D005889 1.1e-133 481.1 548 63.5
GSVIVG01007723001 Vitis vinifera HOM05D004813 ORTHO05D005889 3.3e-133 479.6 538 54.1
Glyma.05G038800 Glycine max HOM05D004813 ORTHO05D005889 7.4e-133 478.4 529 62.2
BcaB02g10019 Brassica carinata HOM05D004813 ORTHO05D005889 9.7e-133 478.0 540 62.0
COL.COLO4_30069 Corchorus olitorius HOM05D004813 ORTHO05D005889 8.2e-132 474.9 539 57.7
Gohir.A12G275100 Gossypium hirsutum HOM05D004813 ORTHO05D005889 1.8e-131 473.8 553 61.7
Phvul.003G201700 Phaseolus vulgaris HOM05D004813 ORTHO05D005889 1.8e-131 473.8 554 57.2
QL10p010983 Quercus lobata HOM05D004813 ORTHO05D005889 1.8e-131 473.8 564 59.2
Thhalv10003981m.g Eutrema salsugineum HOM05D004813 ORTHO05D005889 2.4e-131 473.4 546 61.2
BolC9t54072H Brassica oleracea HOM05D004813 ORTHO05D005889 3.1e-131 473.0 548 61.5
arahy.Tifrunner.gnm1.ann1.9LWV25 Arachis hypogaea HOM05D004813 ORTHO05D005889 1.2e-130 471.1 553 59.7
arahy.Tifrunner.gnm1.ann1.J26J1M Arachis hypogaea HOM05D004813 ORTHO05D005889 2.6e-130 469.9 550 59.3
CARHR281210 Cardamine hirsuta HOM05D004813 ORTHO05D005889 2.6e-130 469.9 548 59.7
BcaNung05723 Brassica carinata HOM05D004813 ORTHO05D005889 4.5e-130 469.2 550 60.5
BcaC04g23133 Brassica carinata HOM05D004813 ORTHO05D005889 1.0e-129 468.0 552 61.2
A07p17440 Brassica napus HOM05D004813 ORTHO05D005889 2.2e-129 466.8 542 60.3
Sp2g30180 Schrenkiella parvula HOM05D004813 ORTHO05D005889 5.0e-129 465.7 542 60.7
DCAR_031351 Daucus carota HOM05D004813 ORTHO05D005889 4.2e-128 462.6 527 60.3
Carub.0002s0981 Capsella rubella HOM05D004813 ORTHO05D005889 5.5e-128 462.2 545 59.3
C09p11820 Brassica napus HOM05D004813 ORTHO05D005889 7.2e-128 461.8 552 60.3
A09p09960 Brassica napus HOM05D004813 ORTHO05D005889 9.4e-128 461.5 541 61.4
AT5G66540 Arabidopsis thaliana HOM05D004813 ORTHO05D005889 1.2e-127 461.1 541 61.0
Atru.chr8.1447 Acer truncatum HOM05D004813 ORTHO05D005889 3.6e-127 459.5 558 58.2
Glyma.17G088200 Glycine max HOM05D004813 ORTHO05D005889 6.1e-127 458.8 531 61.2
BraA09t36642Z Brassica rapa HOM05D004813 ORTHO05D005889 1.0e-126 458.0 541 60.8
vmacro16622 Vaccinium macrocarpon HOM05D004813 ORTHO05D005889 2.3e-126 456.8 576 56.4
Lalb_Chr07g0182801 Lupinus albus HOM05D004813 ORTHO05D005889 3.0e-126 456.4 532 61.1
Potri.015G078500 Populus trichocarpa HOM05D004813 ORTHO05D005889 5.1e-126 455.7 550 59.5
VMungo1215G0389 Vigna mungo HOM05D004813 ORTHO05D005889 5.1e-126 455.7 534 58.8
Carub.0008s2799 Capsella rubella HOM05D004813 ORTHO05D005889 2.0e-125 453.8 549 58.7
Lsat_1_v5_gn_4_75841 Lactuca sativa HOM05D004813 ORTHO05D005889 4.3e-125 452.6 556 54.7
Sc04g0001740 Simmondsia chinensis HOM05D004813 ORTHO05D005889 7.4e-125 451.8 570 56.7
Hund02755 Selenicereus undatus HOM05D004813 ORTHO05D005889 1.7e-124 450.7 549 58.1
Psat4g058360 Pisum sativum HOM05D004813 ORTHO05D005889 2.8e-124 449.9 540 50.7
Rhsim12G0165800 Rhododendron simsii HOM05D004813 ORTHO05D005889 1.1e-123 448.0 528 51.7
RcHm_v2.0_Chr7g0193361 Rosa chinensis HOM05D004813 ORTHO05D005889 1.4e-123 447.6 532 59.8
CDE05G0644 Ceratophyllum demersum HOM05D004813 ORTHO05D005889 6.9e-123 445.3 551 59.2
Medtr4g105590 Medicago truncatula HOM05D004813 ORTHO05D005889 1.2e-122 444.5 542 60.0
PGSC0003DMG400018096 Solanum tuberosum HOM05D004813 ORTHO05D005889 3.4e-122 443.0 548 61.3
Sopen03g031900 Solanum pennellii HOM05D004813 ORTHO05D005889 1.0e-121 441.4 544 61.4
ECA232G2493 Erigeron canadensis HOM05D004813 ORTHO05D005889 5.0e-121 439.1 551 51.2
Solyc03g112820.4 Solanum lycopersicum HOM05D004813 ORTHO05D005889 5.0e-121 439.1 548 61.1
Aa31LG1G15060 Aethionema arabicum HOM05D004813 ORTHO05D005889 8.5e-121 438.3 559 58.3
Lj4g0001275 Lotus japonicus HOM05D004813 ORTHO05D005889 8.5e-121 438.3 548 58.2
AL8G44980 Arabidopsis lyrata HOM05D004813 ORTHO05D005889 3.2e-120 436.4 545 59.8
Ca_21934_v3 Cicer arietinum L. HOM05D004813 ORTHO05D005889 3.2e-120 436.4 534 59.4
Aqoxy3G02883 Aquilegia oxysepala HOM05D004813 ORTHO05D005889 4.2e-120 436.0 554 57.6
PSO063G0570 Papaver somniferum HOM05D004813 ORTHO05D005889 7.2e-120 435.3 533 55.7
PSO832G2178 Papaver somniferum HOM05D004813 ORTHO05D005889 9.4e-120 434.9 546 55.9
HanXRQChr15g0463041 Helianthus annuus HOM05D004813 ORTHO05D005889 4.7e-119 432.6 565 54.5
FAN13G1879 Fragaria x ananassa HOM05D004813 ORTHO05D005889 2.8e-116 423.3 527 56.7
FAN04G1884 Fragaria x ananassa HOM05D004813 ORTHO05D005889 4.8e-116 422.5 527 56.4
FAN08G2504 Fragaria x ananassa HOM05D004813 ORTHO05D005889 4.8e-116 422.5 528 58.3
TPR.G37503 Trifolium pratense HOM05D004813 ORTHO05D005889 6.3e-116 422.2 551 56.6
unitig_0.g15 Utricularia gibba HOM05D004813 ORTHO05D005889 3.1e-115 419.9 529 54.6
Lj9A420T39 Lonicera japonica HOM05D004813 ORTHO05D005889 4.1e-115 419.5 550 49.6
SGA_v2.0_scaffold114G31819 Striga asiatica HOM05D004813 ORTHO05D005889 5.3e-115 419.1 610 55.4
FAN18G4177 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.2e-114 417.9 527 55.2
FvH4_5g05471 Fragaria vesca HOM05D004813 ORTHO05D005889 1.0e-113 414.8 527 58.6
Migut.D01957 Erythranthe guttata HOM05D004813 ORTHO05D005889 1.1e-112 411.4 565 54.5
Atru.chr9.2495 Acer truncatum HOM05D004813 ORTHO05D005889 1.5e-112 411.0 558 54.7
FAN18G0441 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.9e-112 410.6 526 56.1
ATR1091G095 Amborella trichopoda HOM05D004813 ORTHO05D005889 2.1e-111 407.1 524 48.7
SalBow6G0518 Salvia bowleyana HOM05D004813 ORTHO05D005889 3.6e-111 406.4 576 54.7
EL10Ac9g21440 Beta vulgaris HOM05D004813 ORTHO05D005889 7.5e-109 398.7 566 54.9
BraA07t29465Z Brassica rapa HOM05D004813 ORTHO05D005889 1.7e-108 397.5 474 58.9
AUR62010096 Chenopodium quinoa HOM05D004813 ORTHO05D005889 1.8e-107 394.0 534 46.3
AUR62013092 Chenopodium quinoa HOM05D004813 ORTHO05D005889 2.4e-107 393.7 512 48.2
Haze_17000 Corylus avellana HOM05D004813 ORTHO05D005889 7.7e-106 388.7 545 50.1
Zm00001eb293550 Zea mays HOM05D004813 ORTHO05D005889 9.4e-104 381.7 535 52.1
Os12g0133900 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 4.5e-98 362.8 548 51.3
Os11g0137100 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 5.0e-97 359.4 545 52.5
HPP92_018752 Vanilla planifolia HOM05D004813 ORTHO05D005889 3.2e-96 356.7 519 49.5
Ah.01g009190 Amaranthus hybridus HOM05D004813 ORTHO05D005889 1.2e-90 338.2 577 50.8
MD01G1006000 Malus domestica HOM05D004813 ORTHO05D005889 2.1e-87 327.4 350 60.9
Nitab4.5_0008678g0020 Nicotiana tabacum HOM05D004813 ORTHO05D005889 5.7e-85 319.3 354 59.9
Psat4g058280 Pisum sativum HOM05D004813 ORTHO05D005889 3.0e-81 307.0 520 39.8
Pp3c4_31210 Physcomitrium patens HOM05D004813 ORTHO05D005889 1.9e-80 304.3 535 48.0
Mapoly0077s0037 Marchantia polymorpha HOM05D004813 ORTHO05D005889 2.5e-80 303.9 553 43.4
Actinidia19105 Actinidia chinensis HOM05D004813 ORTHO05D005889 4.0e-78 296.6 370 56.5
SMO367G0656 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 1.1e-75 288.5 494 43.1
Oeu020911.1 Olea europaea HOM05D004813 ORTHO05D005889 3.5e-74 283.5 540 43.7
SMO275G0031 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 3.9e-73 280.0 473 42.9
AagrBONN_evm.TU.Sc2ySwM_369.357 Anthoceros agrestis HOM05D004813 ORTHO05D005889 9.5e-72 275.4 557 37.5
CAN.G1166.5 Capsicum annuum HOM05D004813 ORTHO05D005889 5.2e-54 216.5 159 72.3
CAN.G1166.4 Capsicum annuum HOM05D004813 ORTHO05D005889 1.2e-53 215.3 356 51.1
BolC7t43059H Brassica oleracea HOM05D004813 ORTHO05D005889 2.0e-53 214.5 253 51.8
arahy.Tifrunner.gnm1.ann1.J34B41 Arachis hypogaea HOM05D004813 ORTHO05D005889 2.6e-53 214.2 204 59.8
PGR044G0267 Punica granatum HOM05D004813 ORTHO05D005889 1.1e-51 208.8 215 57.7
CBR_g26354 Chara braunii HOM05D004813 ORTHO05D005889 6.6e-49 199.5 241 47.3
Cre08.g370601 Chlamydomonas reinhardtii HOM05D004813 ORTHO05D005889 1.3e-47 195.3 241 46.9
SEGI_37748 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 2.0e-45 188.0 400 46.2
Actinidia19106 Actinidia chinensis HOM05D004813 ORTHO05D005889 7.6e-45 186.0 126 76.2
C07p25370 Brassica napus HOM05D004813 ORTHO05D005889 1.9e-43 181.4 246 49.2
BcaC06g34713 Brassica carinata HOM05D004813 ORTHO05D005889 7.6e-37 159.5 191 49.7
BcaNung06644 Brassica carinata HOM05D004813 ORTHO05D005889 7.6e-37 159.5 191 49.7
PRCOL_00002680 Prasinoderma coloniale HOM05D004813 ORTHO05D005889 9.3e-35 152.5 261 39.8
SEGI_16864 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 3.4e-29 134.0 100 70.0
BcaB02g10018 Brassica carinata HOM05D004813 ORTHO05D005889 7.1e-27 126.3 184 62.0
MBI07_g10351_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 4.3e-24 117.1 152 50.7
Haze_20617 Corylus avellana HOM05D004813 ORTHO05D005889 3.7e-23 114.0 152 48.7
MBI14_g23619_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.9e-19 101.7 62 80.6
MCO01G452 Micromonas commoda HOM05D004813 ORTHO05D005889 4.6e-18 97.1 331 30.8
Potri.003G194550 Populus trichocarpa HOM05D004813 ORTHO05D005889 9.7e-16 89.4 85 57.6
MBI05_g41028_MAGBIO Magnolia biondii HOM05D000669 ORTHO05D005889 4.8e-15 87.0 69 68.1
HanXRQChr11g0336351 Helianthus annuus HOM05D004813 ORTHO05D005889 1.8e-14 85.1 77 57.1
Lj3g0016907 Lotus japonicus HOM05D004813 ORTHO05D005889 4.1e-14 84.0 62 69.4
SEGI_40991 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 6.5e-12 76.6 79 51.9
SalBow1G5081 Salvia bowleyana HOM05D004813 ORTHO05D018488 8.5e-12 76.3 73 61.6
BcaC04g21797 Brassica carinata HOM05D004813 ORTHO05D005889 9.4e-11 72.8 101 45.5
Lj6g0012951 Lotus japonicus HOM05D004813 ORTHO05D005889 3.6e-10 70.9 69 58.0
arahy.Tifrunner.gnm1.ann1.YI6NTU Arachis hypogaea HOM05D004813 ORTHO05D005889 6.1e-10 70.1 66 60.6
MBI03_g03787_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 3.3e-08 64.3 37 81.1
BcaC06g34714 Brassica carinata HOM05D000589 ORTHO05D001885 4.8e-07 60.5 47 68.1


User provided reference genes

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