Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025771.2 Cucumis melo HOM05D004188 ORTHO05D004445 1.4e-60 236.9 200 100.0
CsaV3_6G013900 Cucumis sativus L. HOM05D004188 ORTHO05D004445 6.0e-32 141.7 166 74.1
ClCG02G021140 Citrullus lanatus HOM05D004188 ORTHO05D004445 1.3e-23 114.0 60 96.7
Sed0015663 Sechium edule HOM05D004188 ORTHO05D004445 2.2e-18 96.7 62 80.6
CANSAT54G2412 Cannabis sativa HOM05D004188 ORTHO05D004445 1.9e-14 83.6 59 69.5
Duzib168G0960 Durio zibethinus HOM05D004188 ORTHO05D004445 4.3e-14 82.4 72 63.9
Hma1.2p1_1031F.1_g250070 Hydrangea macrophylla HOM05D004188 ORTHO05D004445 7.3e-14 81.6 69 63.8
Potri.004G210300 Populus trichocarpa HOM05D004188 ORTHO05D004445 9.5e-14 81.3 81 59.3
Gohir.D03G134100 Gossypium hirsutum HOM05D004188 ORTHO05D004445 1.2e-13 80.9 73 61.6
Gorai.003G141200 Gossypium raimondii HOM05D004188 ORTHO05D004445 1.6e-13 80.5 73 61.6
Gohir.A03G034200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 2.1e-13 80.1 73 61.6
Gorai.009G106500 Gossypium raimondii HOM05D004188 ORTHO05D004445 2.1e-13 80.1 50 78.0
Lsat_1_v5_gn_6_46020 Lactuca sativa HOM05D004188 ORTHO05D004445 2.8e-13 79.7 71 60.6
Solyc06g016790.3 Solanum lycopersicum HOM05D004188 ORTHO05D004445 4.7e-13 79.0 80 56.2
Lsat_1_v5_gn_1_65340 Lactuca sativa HOM05D004188 ORTHO05D004445 6.2e-13 78.6 58 67.2
Rhsim01G0217000 Rhododendron simsii HOM05D004188 ORTHO05D004445 6.2e-13 78.6 51 76.5
Rhsim01G0217100 Rhododendron simsii HOM05D004188 ORTHO05D004445 6.2e-13 78.6 51 76.5
Potri.009G013500 Populus trichocarpa HOM05D004188 ORTHO05D004445 1.1e-12 77.8 75 60.0
MBI07_g19312_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 1.4e-12 77.4 72 65.3
EL10Ac9g22513 Beta vulgaris HOM05D004188 ORTHO05D004445 1.8e-12 77.0 55 63.6
Duzib170G0015 Durio zibethinus HOM05D004188 ORTHO05D004445 1.8e-12 77.0 84 53.6
Oeu002868.1 Olea europaea HOM05D004188 ORTHO05D004445 2.4e-12 76.6 80 50.0
Sabra04G0141900 Salix brachista HOM05D004188 ORTHO05D004445 3.1e-12 76.3 50 76.0
CARHR150740 Cardamine hirsuta HOM05D004188 ORTHO05D004445 4.0e-12 75.9 68 61.8
CAN.G631.25 Capsicum annuum HOM05D004188 ORTHO05D004445 5.2e-12 75.5 51 70.6
Migut.D02222 Erythranthe guttata HOM05D004188 ORTHO05D004445 8.9e-12 74.7 51 74.5
Migut.D02278 Erythranthe guttata HOM05D004188 ORTHO05D004445 8.9e-12 74.7 51 74.5
Cfa011320 Carpinus fangiana HOM05D004188 ORTHO05D004445 1.2e-11 74.3 73 57.5
AT3G45230 Arabidopsis thaliana HOM05D004188 ORTHO05D004445 1.5e-11 73.9 68 58.8
MELO3C026856.2 Cucumis melo HOM05D004188 ORTHO05D004445 1.5e-11 73.9 73 57.5
Duzib150G1311 Durio zibethinus HOM05D004188 ORTHO05D004445 1.5e-11 73.9 73 57.5
BraA06t25239Z Brassica rapa HOM05D004188 ORTHO05D004445 2.0e-11 73.6 68 60.3
Peaxi162Scf00092g00152 Petunia axillaris HOM05D004188 ORTHO05D004445 2.0e-11 73.6 56 67.9
AL5G23790 Arabidopsis lyrata HOM05D004188 ORTHO05D004445 2.6e-11 73.2 72 55.6
BcaC01g01980 Brassica carinata HOM05D004188 ORTHO05D004445 2.6e-11 73.2 75 57.3
A06p21540 Brassica napus HOM05D004188 ORTHO05D004445 2.6e-11 73.2 75 57.3
C03p69850 Brassica napus HOM05D004188 ORTHO05D004445 2.6e-11 73.2 75 57.3
BolC3t19246H Brassica oleracea HOM05D004188 ORTHO05D004445 2.6e-11 73.2 75 57.3
CAN.G920.1 Capsicum annuum HOM05D004188 ORTHO05D004445 2.6e-11 73.2 81 53.1
Cc01_g11150 Coffea canephora HOM05D004188 ORTHO05D004445 2.6e-11 73.2 83 53.0
ECA233G4889 Erigeron canadensis HOM05D004188 ORTHO05D004445 2.6e-11 73.2 59 62.7
Sopen06g005740 Solanum pennellii HOM05D004188 ORTHO05D004445 2.6e-11 73.2 68 60.3
PGSC0003DMG400008124 Solanum tuberosum HOM05D004188 ORTHO05D004445 2.6e-11 73.2 70 54.3
PGSC0003DMG400029164 Solanum tuberosum HOM05D004188 ORTHO05D004445 2.6e-11 73.2 68 58.8
Gohir.D05G102200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 3.4e-11 72.8 95 46.3
RcHm_v2.0_Chr5g0059401 Rosa chinensis HOM05D004188 ORTHO05D004445 3.4e-11 72.8 80 55.0
TWI75G1406 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 3.4e-11 72.8 58 63.8
MSTRG.21125 Avicennia marina HOM05D004188 ORTHO05D004445 4.4e-11 72.4 57 64.9
BcaB01g01101 Brassica carinata HOM05D004188 ORTHO05D004445 4.4e-11 72.4 68 60.3
CsaV3_1G012810 Cucumis sativus L. HOM05D004188 ORTHO05D004445 4.4e-11 72.4 70 57.1
FAN21G0748 Fragaria x ananassa HOM05D004188 ORTHO05D004445 4.4e-11 72.4 51 70.6
Sabra09G0008000 Salix brachista HOM05D004188 ORTHO05D004445 5.8e-11 72.0 78 51.3
Actinidia24099 Actinidia chinensis HOM05D004188 ORTHO05D004445 7.6e-11 71.6 66 54.5
FvH4_3g32420 Fragaria vesca HOM05D004188 ORTHO05D004445 7.6e-11 71.6 51 70.6
Oeu001268.1 Olea europaea HOM05D004188 ORTHO05D004445 7.6e-11 71.6 78 53.8
Nitab4.5_0000650g0240 Nicotiana tabacum HOM05D004188 ORTHO05D004445 9.9e-11 71.2 70 57.1
FAN11G3469 Fragaria x ananassa HOM05D004188 ORTHO05D004445 1.3e-10 70.9 63 61.9
Nitab4.5_0011114g0020 Nicotiana tabacum HOM05D004188 ORTHO05D004445 1.3e-10 70.9 56 66.1
Prupe.6G101100 Prunus persica HOM05D004188 ORTHO05D004445 1.7e-10 70.5 70 54.3
Sed0026517 Sechium edule HOM05D004188 ORTHO05D004445 1.7e-10 70.5 71 56.3
arahy.Tifrunner.gnm1.ann1.70MDEI Arachis hypogaea HOM05D004188 ORTHO05D004445 2.2e-10 70.1 74 52.7
arahy.Tifrunner.gnm1.ann1.P4NYDW Arachis hypogaea HOM05D004188 ORTHO05D004445 2.2e-10 70.1 74 52.7
ECA248G2476 Erigeron canadensis HOM05D004188 ORTHO05D004445 2.9e-10 69.7 79 46.8
Psat7g224760 Pisum sativum HOM05D004188 ORTHO05D004445 2.9e-10 69.7 63 58.7
THA.LOC104799503 Tarenaya hassleriana HOM05D004188 ORTHO05D004445 2.9e-10 69.7 65 61.5
FAN16G2082 Fragaria x ananassa HOM05D004188 ORTHO05D004445 3.8e-10 69.3 73 54.8
Actinidia03061 Actinidia chinensis HOM05D004188 ORTHO05D004445 4.9e-10 68.9 49 67.3
Manes.04G021600 Manihot esculenta HOM05D004188 ORTHO05D004445 4.9e-10 68.9 93 46.2
Oeu030181.1 Olea europaea HOM05D004188 ORTHO05D004445 4.9e-10 68.9 80 51.2
Phvul.011G078900 Phaseolus vulgaris HOM05D004188 ORTHO05D004445 4.9e-10 68.9 59 62.7
FAN25G0660 Fragaria x ananassa HOM05D004188 ORTHO05D004445 6.4e-10 68.6 63 60.3
Lsat_1_v5_gn_2_98481 Lactuca sativa HOM05D004188 ORTHO05D004445 6.4e-10 68.6 92 41.3
Prupe.2G214100 Prunus persica HOM05D004188 ORTHO05D004445 6.4e-10 68.6 53 58.5
ClCG03G002160 Citrullus lanatus HOM05D004188 ORTHO05D004445 8.4e-10 68.2 73 53.4
Medtr4g059520 Medicago truncatula HOM05D004188 ORTHO05D004445 1.1e-09 67.8 70 55.7
Medtr4g459420 Medicago truncatula HOM05D004188 ORTHO05D004445 1.1e-09 67.8 70 55.7
Dinv32748 Davidia involucrata HOM05D004188 ORTHO05D004445 1.4e-09 67.4 56 64.3
Thhalv10002916m.g Eutrema salsugineum HOM05D004188 ORTHO05D004445 1.4e-09 67.4 68 55.9
MBI10_g41700_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 1.4e-09 67.4 55 61.8
Rhsim13G0094200 Rhododendron simsii HOM05D004188 ORTHO05D004445 1.9e-09 67.0 58 55.2
Solyc11g069390.1 Solanum lycopersicum HOM05D004188 ORTHO05D004445 2.4e-09 66.6 71 52.1
DCAR_006061 Daucus carota HOM05D004188 ORTHO05D004445 3.2e-09 66.2 53 60.4
Atru.chr3.3633 Acer truncatum HOM05D004188 ORTHO05D004445 4.1e-09 65.9 42 76.2
Carub.0005s1101 Capsella rubella HOM05D004188 ORTHO05D004445 4.1e-09 65.9 65 61.5
Aa31LG4G14540 Aethionema arabicum HOM05D004188 ORTHO05D004445 7.1e-09 65.1 50 64.0
CiPaw.14G080400 Carya illinoinensis HOM05D004188 ORTHO05D004445 7.1e-09 65.1 66 51.5
Ca_05256_v3 Cicer arietinum L. HOM05D004188 ORTHO05D004445 7.1e-09 65.1 70 51.4
arahy.Tifrunner.gnm1.ann1.D47N05 Arachis hypogaea HOM05D004188 ORTHO05D004445 9.2e-09 64.7 73 56.2
TPR.G15542 Trifolium pratense HOM05D004188 ORTHO05D004445 1.2e-08 64.3 69 53.6
Glyma.12G172900 Glycine max HOM05D004188 ORTHO05D004445 1.6e-08 63.9 57 54.4
arahy.Tifrunner.gnm1.ann1.86U5T6 Arachis hypogaea HOM05D004188 ORTHO05D004445 2.7e-08 63.2 72 55.6
PSO384G1281 Papaver somniferum HOM05D004188 ORTHO05D004445 2.7e-08 63.2 62 54.8
C03p12760 Brassica napus HOM05D004188 ORTHO05D004445 3.5e-08 62.8 59 61.0
BolC3t13742H Brassica oleracea HOM05D004188 ORTHO05D004445 4.6e-08 62.4 59 61.0
Glyma.12G067800 Glycine max HOM05D004188 ORTHO05D004445 6.0e-08 62.0 69 52.2
Nitab4.5_0012712g0020 Nicotiana tabacum HOM05D004188 ORTHO05D004445 6.0e-08 62.0 39 69.2
Sopen11g028110 Solanum pennellii HOM05D004188 ORTHO05D004445 6.0e-08 62.0 69 50.7
Ah.01g014350 Amaranthus hybridus HOM05D004188 ORTHO05D004445 7.8e-08 61.6 58 51.7
unitig_699.g19195 Utricularia gibba HOM05D004188 ORTHO05D004445 7.8e-08 61.6 45 64.4
BcaB01g04664 Brassica carinata HOM05D004188 ORTHO05D004445 1.0e-07 61.2 59 59.3
Manes.11G144800 Manihot esculenta HOM05D004188 ORTHO05D004445 1.0e-07 61.2 59 57.6
arahy.Tifrunner.gnm1.ann1.H0Z3H2 Arachis hypogaea HOM05D004188 ORTHO05D004445 1.3e-07 60.8 57 54.4
Peaxi162Scf00270g00089 Petunia axillaris HOM05D004188 ORTHO05D004445 1.3e-07 60.8 65 52.3
CiPaw.13G112700 Carya illinoinensis HOM05D004188 ORTHO05D004445 1.7e-07 60.5 81 49.4
Lalb_Chr14g0374691 Lupinus albus HOM05D004188 ORTHO05D004445 1.7e-07 60.5 77 50.6
PGR102G1665 Punica granatum HOM05D004188 ORTHO05D004445 2.3e-07 60.1 60 56.7
PSO339G1636 Papaver somniferum HOM05D004188 ORTHO05D004445 3.0e-07 59.7 63 52.4
Sc06g0010170 Simmondsia chinensis HOM05D004188 ORTHO05D004445 3.0e-07 59.7 53 58.5
A03p11070 Brassica napus HOM05D004188 ORTHO05D004445 3.9e-07 59.3 59 57.6
BraA03t10421Z Brassica rapa HOM05D004188 ORTHO05D004445 3.9e-07 59.3 59 57.6
THA.LOC104810856 Tarenaya hassleriana HOM05D004188 ORTHO05D004445 3.9e-07 59.3 38 73.7
BraA10t43861Z Brassica rapa HOM05D004188 ORTHO05D004445 5.1e-07 58.9 71 52.1
Dinv31327 Davidia involucrata HOM05D001979 ORTHO05D001961 5.1e-07 58.9 45 60.0
Glyma.11G146900 Glycine max HOM05D004188 ORTHO05D004445 5.1e-07 58.9 72 51.4
TWI31G0432 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 5.1e-07 58.9 71 50.7
Mapoly0127s0007 Marchantia polymorpha HOM05D004188 ORTHO05D004445 6.6e-07 58.5 62 51.6
CANSAT56G2191 Cannabis sativa HOM05D004188 ORTHO05D004445 1.1e-06 57.8 51 56.9
VMungo1080G0149 Vigna mungo HOM05D004188 ORTHO05D004445 1.1e-06 57.8 53 52.8
VMungo1127G1131 Vigna mungo HOM05D000847 ORTHO05D003278 1.1e-06 57.8 72 50.0
A10p17820 Brassica napus HOM05D004188 ORTHO05D004445 1.5e-06 57.4 71 50.7
HanXRQChr13g0403511 Helianthus annuus HOM05D004188 ORTHO05D004445 1.5e-06 57.4 71 49.3
Lalb_Chr22g0350231 Lupinus albus HOM05D004188 ORTHO05D004445 1.5e-06 57.4 77 45.5
TAR629G0463 Trochodendron aralioides HOM05D004188 ORTHO05D004445 1.5e-06 57.4 80 43.8
QL08p056015 Quercus lobata HOM05D007562 ORTHO05D009721 1.9e-06 57.0 45 57.8
Ca_01416_v3 Cicer arietinum L. HOM05D004188 ORTHO05D004445 3.3e-06 56.2 72 51.4
Thhalv10015987m.g Eutrema salsugineum HOM05D004188 ORTHO05D004445 3.3e-06 56.2 79 48.1
Sp6g22190 Schrenkiella parvula HOM05D004188 ORTHO05D004445 3.3e-06 56.2 59 54.2
Ciclev10029471m.g Citrus clementina HOM05D004188 ORTHO05D004445 4.3e-06 55.8 76 50.0
Lj2g0024305 Lotus japonicus HOM05D004188 ORTHO05D004445 4.3e-06 55.8 74 44.6
AL8G37220 Arabidopsis lyrata HOM05D004188 ORTHO05D004445 5.6e-06 55.5 57 52.6
TWI79G1650 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 5.6e-06 55.5 40 67.5
BcaB08g36360 Brassica carinata HOM05D004188 ORTHO05D004445 7.3e-06 55.1 64 54.7
C09p53350 Brassica napus HOM05D004188 ORTHO05D004445 7.3e-06 55.1 55 56.4
Lj3g0014225 Lotus japonicus HOM05D004188 ORTHO05D004445 7.3e-06 55.1 71 46.5
Nitab4.5_0007218g0010 Nicotiana tabacum HOM05D004188 ORTHO05D004445 7.3e-06 55.1 33 72.7
Os03g0852400 Oryza sativa ssp. japonica HOM05D004188 ORTHO05D004445 7.3e-06 55.1 50 54.0
Medtr2g094170 Medicago truncatula HOM05D004188 ORTHO05D004445 9.6e-06 54.7 79 41.8
Phvul.005G135700 Phaseolus vulgaris HOM05D004188 ORTHO05D004445 9.6e-06 54.7 53 52.8


User provided reference genes

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