Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025766.2 Cucumis melo HOM05D005643 ORTHO05D006819 4.5e-138 494.6 251 100.0
CsaV3_6G013840 Cucumis sativus L. HOM05D005643 ORTHO05D006819 1.2e-127 459.9 251 93.6
Sed0015117 Sechium edule HOM05D005643 ORTHO05D006819 1.7e-124 449.5 252 90.9
Cfa011331 Carpinus fangiana HOM05D005643 ORTHO05D006819 5.1e-105 384.8 252 79.0
TPR.G13337 Trifolium pratense HOM05D005643 ORTHO05D006819 1.1e-104 383.6 251 78.9
Medtr4g015590 Medicago truncatula HOM05D005643 ORTHO05D006819 5.6e-104 381.3 252 79.0
CiPaw.13G111900 Carya illinoinensis HOM05D005643 ORTHO05D006819 1.6e-103 379.8 251 78.1
arahy.Tifrunner.gnm1.ann1.9U2L6D Arachis hypogaea HOM05D005643 ORTHO05D006819 3.6e-103 378.6 249 76.3
arahy.Tifrunner.gnm1.ann1.X5NJ7E Arachis hypogaea HOM05D005643 ORTHO05D006819 6.2e-103 377.9 253 77.1
FvH4_3g32570 Fragaria vesca HOM05D005643 ORTHO05D006819 8.1e-103 377.5 252 75.8
Glyma.01G116100 Glycine max HOM05D005643 ORTHO05D006819 8.1e-103 377.5 257 75.5
Phvul.010G001900 Phaseolus vulgaris HOM05D005643 ORTHO05D006819 3.1e-102 375.6 252 75.8
Prupe.6G100100 Prunus persica HOM05D005643 ORTHO05D006819 4.0e-102 375.2 251 76.9
Lalb_Chr19g0124481 Lupinus albus HOM05D005643 ORTHO05D006819 6.8e-102 374.4 251 77.3
FAN11G2689 Fragaria x ananassa HOM05D005643 ORTHO05D006819 8.9e-102 374.0 257 73.9
Glyma.03G060100 Glycine max HOM05D005643 ORTHO05D006819 1.2e-101 373.6 253 75.9
QL01p022418 Quercus lobata HOM05D005643 ORTHO05D006819 2.6e-101 372.5 251 77.3
Psat7g245880 Pisum sativum HOM05D005643 ORTHO05D006819 1.7e-100 369.8 254 78.0
Ciclev10029093m.g Citrus clementina HOM05D005643 ORTHO05D006819 3.8e-100 368.6 257 74.7
Nitab4.5_0006757g0010 Nicotiana tabacum HOM05D005643 ORTHO05D006819 8.4e-100 367.5 249 73.1
Lj3g0018588 Lotus japonicus HOM05D005643 ORTHO05D006819 1.1e-99 367.1 251 74.9
FAN16G3648 Fragaria x ananassa HOM05D005643 ORTHO05D006819 1.9e-99 366.3 257 73.2
Cc01_g11250 Coffea canephora HOM05D005643 ORTHO05D006819 2.4e-99 365.9 252 75.4
AL8G37130 Arabidopsis lyrata HOM05D005643 ORTHO05D006819 3.2e-99 365.5 253 73.5
Dinv32759 Davidia involucrata HOM05D005643 ORTHO05D006819 3.2e-99 365.5 248 74.6
Manes.04G022200 Manihot esculenta HOM05D005643 ORTHO05D006819 3.2e-99 365.5 248 75.0
FAN21G1883 Fragaria x ananassa HOM05D005643 ORTHO05D006819 4.2e-99 365.2 270 70.4
Gohir.D05G076900 Gossypium hirsutum HOM05D005643 ORTHO05D006819 4.2e-99 365.2 253 73.5
PGSC0003DMG400008060 Solanum tuberosum HOM05D005643 ORTHO05D006819 5.4e-99 364.8 250 73.6
Thecc.09G257100 Theobroma cacao HOM05D005643 ORTHO05D006819 7.1e-99 364.4 252 73.4
Peaxi162Scf00270g00108 Petunia axillaris HOM05D005643 ORTHO05D006819 9.3e-99 364.0 248 72.2
TAR633G1751 Trochodendron aralioides HOM05D005643 ORTHO05D006819 9.3e-99 364.0 251 73.3
Gorai.009G078300 Gossypium raimondii HOM05D005643 ORTHO05D006819 1.2e-98 363.6 253 73.1
Solyc11g069290.2 Solanum lycopersicum HOM05D005643 ORTHO05D006819 1.2e-98 363.6 250 73.2
Sopen11g028020 Solanum pennellii HOM05D005643 ORTHO05D006819 1.2e-98 363.6 249 72.3
AT5G60540 Arabidopsis thaliana HOM05D005643 ORTHO05D006819 1.6e-98 363.2 253 73.1
Gohir.A05G074000 Gossypium hirsutum HOM05D005643 ORTHO05D006819 2.1e-98 362.8 253 73.1
Potri.009G012700 Populus trichocarpa HOM05D005643 ORTHO05D006819 2.1e-98 362.8 253 73.9
Sabra09G0008500 Salix brachista HOM05D005643 ORTHO05D006819 3.5e-98 362.1 252 73.4
Oeu059095.1 Olea europaea HOM05D005643 ORTHO05D006819 4.6e-98 361.7 249 73.9
Rhsim13G0093700 Rhododendron simsii HOM05D005643 ORTHO05D006819 6.0e-98 361.3 252 73.4
BolC2t07247H Brassica oleracea HOM05D005643 ORTHO05D006819 1.0e-97 360.5 254 72.0
BcaB08g36348 Brassica carinata HOM05D005643 ORTHO05D006819 1.3e-97 360.1 253 72.7
C09p53180 Brassica napus HOM05D005643 ORTHO05D006819 1.3e-97 360.1 253 72.3
BolC9t58193H Brassica oleracea HOM05D005643 ORTHO05D006819 1.3e-97 360.1 253 72.3
Atru.chr3.3643 Acer truncatum HOM05D005643 ORTHO05D006819 1.7e-97 359.8 251 73.3
A10p17720 Brassica napus HOM05D005643 ORTHO05D006819 3.0e-97 359.0 250 74.0
BraA10t43851Z Brassica rapa HOM05D005643 ORTHO05D006819 3.0e-97 359.0 250 74.0
Carub.0008s2123 Capsella rubella HOM05D005643 ORTHO05D006819 3.0e-97 359.0 253 72.3
RcHm_v2.0_Chr5g0059641 Rosa chinensis HOM05D005643 ORTHO05D006819 3.0e-97 359.0 266 70.3
Duzib170G0435 Durio zibethinus HOM05D005643 ORTHO05D006819 5.1e-97 358.2 254 72.0
Duzib170G0739 Durio zibethinus HOM05D005643 ORTHO05D006819 5.1e-97 358.2 254 72.0
CAN.G631.16 Capsicum annuum HOM05D005643 ORTHO05D006819 6.6e-97 357.8 248 73.8
TWI75G1433 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 4.3e-96 355.1 252 73.0
CAN.G1001.26 Capsicum annuum HOM05D005643 ORTHO05D006819 5.6e-96 354.8 249 72.3
THA.LOC104814830 Tarenaya hassleriana HOM05D005643 ORTHO05D006819 5.6e-96 354.8 251 73.7
Duzib150G0959 Durio zibethinus HOM05D005643 ORTHO05D006819 9.6e-96 354.0 252 71.4
Aa31LG1G12530 Aethionema arabicum HOM05D005643 ORTHO05D006819 1.3e-95 353.6 246 72.8
Eucgr.B02489 Eucalyptus grandis HOM05D005643 ORTHO05D006819 1.6e-95 353.2 248 71.4
MSTRG.21131 Avicennia marina HOM05D005643 ORTHO05D006819 2.1e-95 352.8 248 72.2
TWI79G0673 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 2.1e-95 352.8 249 73.9
Sp6g22110 Schrenkiella parvula HOM05D005643 ORTHO05D006819 3.6e-95 352.1 252 72.2
MD11G1133800 Malus domestica HOM05D005643 ORTHO05D006819 1.1e-94 350.5 269 69.9
ECA248G1947 Erigeron canadensis HOM05D005643 ORTHO05D006819 3.1e-94 349.0 253 72.7
Lj1A190T89 Lonicera japonica HOM05D005643 ORTHO05D006819 3.1e-94 349.0 250 72.0
VMungo0331G1810 Vigna mungo HOM05D005643 ORTHO05D006819 3.1e-94 349.0 236 75.0
HanXRQChr01g0018371 Helianthus annuus HOM05D005643 ORTHO05D006819 5.3e-94 348.2 254 70.9
Nn2g10757 Nelumbo nucifera HOM05D005643 ORTHO05D006819 6.9e-94 347.8 247 70.9
Thhalv10014160m.g Eutrema salsugineum HOM05D005643 ORTHO05D006819 9.0e-94 347.4 248 71.4
GSVIVG01025172001 Vitis vinifera HOM05D005643 ORTHO05D006819 1.5e-93 346.7 249 72.3
Lalb_Chr03g0043331 Lupinus albus HOM05D005643 ORTHO05D006819 2.0e-93 346.3 235 76.2
Migut.D02214 Erythranthe guttata HOM05D005643 ORTHO05D006819 2.6e-93 345.9 248 70.2
Nitab4.5_0000650g0110 Nicotiana tabacum HOM05D005643 ORTHO05D006819 3.4e-93 345.5 272 65.8
CARHR274200 Cardamine hirsuta HOM05D005643 ORTHO05D006819 4.4e-93 345.1 255 70.2
Aqoxy1G03172 Aquilegia oxysepala HOM05D005643 ORTHO05D006819 5.8e-93 344.7 247 70.4
arahy.Tifrunner.gnm1.ann1.QSC7KM Arachis hypogaea HOM05D005643 ORTHO05D006819 5.8e-93 344.7 303 64.0
Migut.D02210 Erythranthe guttata HOM05D005643 ORTHO05D006819 7.6e-93 344.4 248 69.8
SGA_v2.0_scaffold97G29210 Striga asiatica HOM05D005643 ORTHO05D006819 9.9e-93 344.0 249 69.9
PGR102G1730 Punica granatum HOM05D005643 ORTHO05D006819 2.9e-92 342.4 251 70.9
DCAR_006056 Daucus carota HOM05D005643 ORTHO05D006819 1.4e-91 340.1 247 69.6
Sc06g0010070 Simmondsia chinensis HOM05D005643 ORTHO05D006819 3.2e-91 339.0 251 67.3
SalBow5G2340 Salvia bowleyana HOM05D005643 ORTHO05D006819 1.6e-90 336.7 249 69.1
unitig_0.g1517 Utricularia gibba HOM05D005643 ORTHO05D006819 1.6e-90 336.7 247 69.6
ATR0115G033 Amborella trichopoda HOM05D005643 ORTHO05D006819 2.7e-90 335.9 229 74.2
Os02g0130100 Oryza sativa ssp. japonica HOM05D005643 ORTHO05D006819 2.7e-90 335.9 256 68.0
PSO384G4957 Papaver somniferum HOM05D005643 ORTHO05D006819 6.0e-90 334.7 249 67.5
PSO339G3071 Papaver somniferum HOM05D005643 ORTHO05D006819 7.9e-90 334.3 249 68.3
EL10Ac9g22501 Beta vulgaris HOM05D005643 ORTHO05D006819 4.3e-88 328.6 223 70.9
AUR62039626 Chenopodium quinoa HOM05D005643 ORTHO05D006819 3.6e-87 325.5 255 65.5
AUR62024993 Chenopodium quinoa HOM05D005643 ORTHO05D006819 8.1e-87 324.3 254 64.6
BcaB08g36349 Brassica carinata HOM05D005643 ORTHO05D006819 1.2e-85 320.5 239 69.0
MBI07_g41453_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 7.6e-85 317.8 235 69.8
SEGI_15740 Sequoiadendron giganteum HOM05D005643 ORTHO05D006819 9.9e-85 317.4 250 64.4
MD03G1113000 Malus domestica HOM05D005643 ORTHO05D006819 1.7e-84 316.6 244 69.3
Lsat_1_v5_gn_1_65480 Lactuca sativa HOM05D005643 ORTHO05D006819 2.9e-84 315.8 251 67.3
AagrBONN_evm.TU.Sc2ySwM_117.2790 Anthoceros agrestis HOM05D005643 ORTHO05D006819 1.9e-83 313.2 248 64.5
Hma1.2p1_1030F.1_g249820 Hydrangea macrophylla HOM05D005643 ORTHO05D006819 4.2e-83 312.0 234 67.5
HPP92_025849 Vanilla planifolia HOM05D005643 ORTHO05D006819 5.4e-83 311.6 248 63.7
Pp3c19_5510 Physcomitrium patens HOM05D005643 ORTHO05D006819 9.6e-80 300.8 251 62.5
Mapoly0081s0077 Marchantia polymorpha HOM05D005643 ORTHO05D006819 2.6e-77 292.7 248 61.7
SMO364G0700 Selaginella moellendorffii HOM05D005643 ORTHO05D006819 1.0e-76 290.8 250 62.4
Pp3c18_20140 Physcomitrium patens HOM05D005643 ORTHO05D006819 2.9e-76 289.3 223 65.9
arahy.Tifrunner.gnm1.ann1.J7FTHV Arachis hypogaea HOM05D005643 ORTHO05D006819 1.9e-75 286.6 230 67.0
Actinidia24093 Actinidia chinensis HOM05D005643 ORTHO05D006819 1.2e-74 283.9 198 70.7
Zm00001eb208970 Zea mays HOM05D005643 ORTHO05D006819 1.3e-73 280.4 177 78.0
C02p11600 Brassica napus HOM05D005643 ORTHO05D006819 1.8e-73 280.0 207 68.1
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.8e-73 280.0 236 63.6
Actinidia03737 Actinidia chinensis HOM05D005643 ORTHO05D006819 9.6e-72 274.2 201 70.1
CSS0039600 Camellia sinensis var. sinensis HOM05D005643 ORTHO05D006819 4.1e-70 268.9 251 59.8
CBR_g31179 Chara braunii HOM05D005643 ORTHO05D006819 2.5e-67 259.6 244 55.7
MD03G1113200 Malus domestica HOM05D005643 ORTHO05D006819 3.5e-66 255.8 176 75.0
Ca_09130_v3 Cicer arietinum L. HOM05D005643 ORTHO05D006819 1.9e-64 250.0 183 72.1
Oeu002854.1 Olea europaea HOM05D005643 ORTHO05D006819 2.5e-64 249.6 190 65.8
vmacro03191 Vaccinium macrocarpon HOM05D005643 ORTHO05D006819 2.0e-61 240.0 244 53.7
Cre03.g167051 Chlamydomonas reinhardtii HOM05D005643 ORTHO05D006819 2.9e-60 236.1 216 57.4
BcaC04g19711 Brassica carinata HOM05D005643 ORTHO05D006819 2.3e-57 226.5 253 53.8
MBI07_g42630_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 3.7e-55 219.2 216 56.5
MCO05G014 Micromonas commoda HOM05D005643 ORTHO05D006819 1.5e-53 213.8 221 52.5
BcaC03g13961 Brassica carinata HOM05D005643 ORTHO05D006819 4.2e-51 205.7 167 63.5
Lj2A1030T57 Lonicera japonica HOM05D005643 ORTHO05D006819 1.6e-50 203.8 113 87.6
Haze_23864 Corylus avellana HOM05D005643 ORTHO05D006819 1.9e-43 180.3 138 70.3
TAR636G3455 Trochodendron aralioides HOM05D005643 ORTHO05D006819 2.5e-43 179.9 101 82.2
CiPaw.13G111500 Carya illinoinensis HOM05D005643 ORTHO05D006819 4.4e-40 169.1 137 65.7
Cfa022863 Carpinus fangiana HOM05D005643 ORTHO05D006819 3.7e-39 166.0 273 39.2
Oeu002855.1 Olea europaea HOM05D005643 ORTHO05D006819 4.8e-39 165.6 145 58.6
Rhsim06G0101300 Rhododendron simsii HOM05D005643 ORTHO05D006819 3.6e-26 122.9 77 74.0
BraA02t05718Z Brassica rapa HOM05D005643 ORTHO05D006819 4.7e-26 122.5 67 82.1
SHI06096 Sapria himalayana HOM05D005643 ORTHO05D006819 6.3e-23 112.1 117 50.4
Cpa.g.sc216.17 Carica papaya HOM05D005643 ORTHO05D006819 9.2e-22 108.2 57 86.0
ClCG02G021090 Citrullus lanatus HOM05D005643 ORTHO05D006819 7.7e-21 105.1 75 77.3
SHI06095 Sapria himalayana HOM05D005643 ORTHO05D006819 7.3e-19 98.6 72 63.9
Dinv12496 Davidia involucrata HOM05D005643 ORTHO05D006819 1.2e-16 91.3 68 64.7
Lj2A1030T58 Lonicera japonica HOM05D005643 ORTHO05D006819 2.7e-13 80.1 70 57.1
TAR636G0837 Trochodendron aralioides HOM05D005643 ORTHO05D006819 1.7e-12 77.4 93 46.2
Cpa.g.sc216.18 Carica papaya HOM05D005643 ORTHO05D006819 1.5e-11 74.3 69 59.4
SHI06094 Sapria himalayana HOM05D000105 ORTHO05D000023 8.0e-10 68.6 58 67.2
Rhsim13G0093600 Rhododendron simsii HOM05D000699 ORTHO05D000519 3.4e-08 63.2 42 69.0
TAR005G0002 Trochodendron aralioides HOM05D005643 ORTHO05D006819 1.4e-06 57.8 71 47.9


User provided reference genes

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