Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025231.2 Cucumis melo HOM05D003612 ORTHO05D004323 3.1e-184 648.3 312 100.0
CsaV3_4G027280 Cucumis sativus L. HOM05D003612 ORTHO05D004323 2.1e-148 529.3 268 94.4
ClCG04G006280 Citrullus lanatus HOM05D003612 ORTHO05D004323 9.3e-141 503.8 319 78.4
Sed0024079 Sechium edule HOM05D003612 ORTHO05D004323 2.4e-120 436.0 268 78.7
ClCG10G015700 Citrullus lanatus HOM05D003612 ORTHO05D004323 3.3e-114 415.6 245 84.1
Dinv02797 Davidia involucrata HOM05D003612 ORTHO05D004323 9.4e-93 344.4 268 60.4
Lj2A386T88 Lonicera japonica HOM05D003612 ORTHO05D004323 1.3e-86 323.9 268 57.5
Dinv39651 Davidia involucrata HOM05D003612 ORTHO05D004323 5.0e-86 322.0 268 57.1
CSS0036075 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 1.2e-84 317.4 268 58.2
Rhsim04G0105800 Rhododendron simsii HOM05D003612 ORTHO05D004323 1.4e-80 303.9 274 55.1
Nitab4.5_0000082g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 3.1e-80 302.8 269 55.4
Actinidia22794 Actinidia chinensis HOM05D003612 ORTHO05D004323 2.0e-79 300.1 266 56.0
MBI16_g21161_MAGBIO Magnolia biondii HOM05D003612 ORTHO05D004323 4.5e-79 298.9 265 55.1
PGR004G2683 Punica granatum HOM05D003612 ORTHO05D004323 4.5e-79 298.9 269 55.4
Nitab4.5_0000082g0220 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.0e-78 297.7 270 55.6
PGSC0003DMG400008168 Solanum tuberosum HOM05D003612 ORTHO05D004323 1.0e-78 297.7 269 54.3
QL07p002913 Quercus lobata HOM05D003612 ORTHO05D004323 1.7e-78 297.0 270 56.3
GSVIVG01033242001 Vitis vinifera HOM05D003612 ORTHO05D004323 3.8e-78 295.8 257 56.8
Sopen10g029960 Solanum pennellii HOM05D003612 ORTHO05D004323 5.0e-78 295.4 269 54.6
Potri.017G142200 Populus trichocarpa HOM05D003612 ORTHO05D004323 6.6e-78 295.0 265 54.0
QL11p026785 Quercus lobata HOM05D003612 ORTHO05D004323 6.6e-78 295.0 270 55.2
Hund23474 Selenicereus undatus HOM05D003612 ORTHO05D004323 1.9e-77 293.5 266 56.4
Peaxi162Scf00059g01812 Petunia axillaris HOM05D003612 ORTHO05D004323 2.5e-77 293.1 278 52.5
Solyc10g079310.2 Solanum lycopersicum HOM05D003612 ORTHO05D004323 9.5e-77 291.2 269 54.3
Eucgr.B02734 Eucalyptus grandis HOM05D003612 ORTHO05D004323 2.1e-76 290.0 272 54.8
Ciclev10005938m.g Citrus clementina HOM05D003612 ORTHO05D004323 2.8e-76 289.7 275 52.4
Nitab4.5_0010316g0020 Nicotiana tabacum HOM05D003612 ORTHO05D004323 2.8e-76 289.7 269 53.5
Sabra17G0119100 Salix brachista HOM05D003612 ORTHO05D004323 4.7e-76 288.9 264 53.4
Nitab4.5_0000912g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 6.1e-76 288.5 267 53.9
CiPaw.09G039700 Carya illinoinensis HOM05D003612 ORTHO05D004323 8.0e-76 288.1 267 52.8
Manes.04G104200 Manihot esculenta HOM05D003612 ORTHO05D004323 8.0e-76 288.1 270 54.8
TPR.G18234 Trifolium pratense HOM05D003612 ORTHO05D004323 1.0e-75 287.7 267 53.9
TPR.G6202 Trifolium pratense HOM05D003612 ORTHO05D004323 1.0e-75 287.7 269 52.4
Psat3g074360 Pisum sativum HOM05D003612 ORTHO05D004323 2.3e-75 286.6 269 53.5
vmacro09060 Vaccinium macrocarpon HOM05D003612 ORTHO05D004323 2.3e-75 286.6 268 54.5
CAN.G641.26 Capsicum annuum HOM05D003612 ORTHO05D004323 3.0e-75 286.2 270 53.3
Cc04_g15140 Coffea canephora HOM05D003612 ORTHO05D004323 8.9e-75 284.6 268 50.4
Eucgr.A02322 Eucalyptus grandis HOM05D003612 ORTHO05D004323 1.2e-74 284.3 272 52.9
Gorai.002G227800 Gossypium raimondii HOM05D003612 ORTHO05D004323 1.2e-74 284.3 266 53.4
Oeu023123.1 Olea europaea HOM05D003612 ORTHO05D004323 1.2e-74 284.3 260 53.8
Cfa016791 Carpinus fangiana HOM05D003612 ORTHO05D004323 5.7e-74 282.0 271 54.2
Hund15698 Selenicereus undatus HOM05D003612 ORTHO05D004323 5.7e-74 282.0 268 54.9
Cc06_g17860 Coffea canephora HOM05D003612 ORTHO05D004323 9.8e-74 281.2 268 51.1
TWI53G1732 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 1.3e-73 280.8 268 54.1
Medtr8g090105 Medicago truncatula HOM05D003612 ORTHO05D004323 1.7e-73 280.4 270 50.7
Lj1g0003709 Lotus japonicus HOM05D003612 ORTHO05D004323 6.4e-73 278.5 255 52.9
Gohir.A01G194000 Gossypium hirsutum HOM05D003612 ORTHO05D004323 8.3e-73 278.1 266 53.4
CANSAT80G2682 Cannabis sativa HOM05D003612 ORTHO05D004323 1.1e-72 277.7 256 50.8
arahy.Tifrunner.gnm1.ann1.GM1CB9 Arachis hypogaea HOM05D003612 ORTHO05D004323 1.4e-72 277.3 253 54.5
Oeu008170.1 Olea europaea HOM05D003612 ORTHO05D004323 3.2e-72 276.2 253 53.0
Nitab4.5_0004416g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 4.1e-72 275.8 253 53.8
arahy.Tifrunner.gnm1.ann1.65NHSX Arachis hypogaea HOM05D003612 ORTHO05D004323 9.2e-72 274.6 253 53.8
VMungo1309G0648 Vigna mungo HOM05D003612 ORTHO05D004323 3.5e-71 272.7 273 49.8
Prupe.7G055000 Prunus persica HOM05D003612 ORTHO05D004323 4.6e-71 272.3 269 51.3
TWI74G0690 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 2.3e-70 270.0 272 48.9
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 3.9e-70 269.2 292 47.9
TAR369G0285 Trochodendron aralioides HOM05D003612 ORTHO05D004323 5.0e-70 268.9 251 54.2
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 1.1e-69 267.7 247 51.4
DCAR_030722 Daucus carota HOM05D003612 ORTHO05D004323 2.5e-69 266.5 268 50.0
FAN02G1760 Fragaria x ananassa HOM05D003612 ORTHO05D004323 7.3e-69 265.0 247 51.0
COL.COLO4_19254 Corchorus olitorius HOM05D003612 ORTHO05D004323 1.6e-68 263.8 271 50.2
SGA_v2.0_scaffold94G28492 Striga asiatica HOM05D003612 ORTHO05D004323 1.6e-68 263.8 274 49.3
MD12G1080400 Malus domestica HOM05D003612 ORTHO05D004323 2.8e-68 263.1 271 50.2
Migut.K00098 Erythranthe guttata HOM05D003612 ORTHO05D004323 3.6e-68 262.7 256 50.4
COL.COLO4_22302 Corchorus olitorius HOM05D003612 ORTHO05D004323 1.0e-67 261.2 271 50.6
Thecc.05G151100 Theobroma cacao HOM05D003612 ORTHO05D004323 1.0e-67 261.2 213 57.7
RcHm_v2.0_Chr3g0483371 Rosa chinensis HOM05D003612 ORTHO05D004323 1.4e-67 260.8 270 48.5
Psat7g055720 Pisum sativum HOM05D003612 ORTHO05D004323 3.1e-67 259.6 255 51.0
SalBow1G2865 Salvia bowleyana HOM05D003612 ORTHO05D004323 8.9e-67 258.1 253 51.4
Actinidia17229 Actinidia chinensis HOM05D003612 ORTHO05D004323 1.2e-66 257.7 234 53.8
CSS0050265 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 2.6e-66 256.5 200 58.5
Nn1g01643 Nelumbo nucifera HOM05D003612 ORTHO05D004323 1.7e-65 253.8 268 50.0
Lj6g0010730 Lotus japonicus HOM05D003612 ORTHO05D004323 2.9e-65 253.1 228 53.5
Zm00001eb102310 Zea mays HOM05D003612 ORTHO05D004323 4.9e-65 252.3 264 47.0
Ca_08432_v3 Cicer arietinum L. HOM05D003612 ORTHO05D004323 1.9e-64 250.4 253 49.4
VMungo1383G3573 Vigna mungo HOM05D003612 ORTHO05D004323 1.9e-64 250.4 257 48.2
MSTRG.26129 Avicennia marina HOM05D003612 ORTHO05D004323 3.2e-64 249.6 256 48.0
Cpa.g.sc182.7 Carica papaya HOM05D003612 ORTHO05D004323 3.2e-64 249.6 254 49.6
Nn8g39441 Nelumbo nucifera HOM05D003612 ORTHO05D004323 7.0e-64 248.4 252 50.4
Aqoxy7G03372 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 1.6e-63 247.3 245 45.7
Lsat_1_v5_gn_7_11501 Lactuca sativa HOM05D000048 ORTHO05D000436 2.0e-63 246.9 224 51.3
Dinv02795 Davidia involucrata HOM05D003612 ORTHO05D004323 2.7e-63 246.5 190 59.5
Phvul.007G088100 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 2.7e-63 246.5 217 53.0
HanXRQChr04g0113101 Helianthus annuus HOM05D003612 ORTHO05D004323 1.7e-62 243.8 220 51.8
FvH4_6g24380 Fragaria vesca HOM05D003612 ORTHO05D004323 3.0e-62 243.0 233 49.4
SHI13547 Sapria himalayana HOM05D003612 ORTHO05D004323 3.0e-62 243.0 269 46.8
Haze_19817 Corylus avellana HOM05D003612 ORTHO05D004323 3.9e-62 242.7 277 48.0
AL3G11670 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 6.6e-62 241.9 243 48.1
Carub.0005s2421 Capsella rubella HOM05D003612 ORTHO05D004323 1.9e-61 240.4 269 43.5
AL5G38900 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 2.5e-61 240.0 269 43.1
AT3G57360 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 5.6e-61 238.8 267 43.1
Haze_19820 Corylus avellana HOM05D003612 ORTHO05D004323 5.6e-61 238.8 275 48.0
Carub.0001s3481 Capsella rubella HOM05D003612 ORTHO05D004323 1.2e-60 237.7 269 43.9
Sopen03g026320 Solanum pennellii HOM05D003612 ORTHO05D004323 2.8e-60 236.5 202 55.4
C04p35070 Brassica napus HOM05D003612 ORTHO05D004323 4.7e-60 235.7 269 44.6
BolC4t25063H Brassica oleracea HOM05D003612 ORTHO05D004323 4.7e-60 235.7 269 44.6
Aqoxy7G03834 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 6.2e-60 235.3 248 46.8
BcaC02g09930 Brassica carinata HOM05D003612 ORTHO05D004323 6.2e-60 235.3 268 44.8
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 8.1e-60 235.0 250 46.8
BraA04t16040Z Brassica rapa HOM05D003612 ORTHO05D004323 1.8e-59 233.8 268 44.0
Lalb_Chr20g0110641 Lupinus albus HOM05D003612 ORTHO05D004323 3.1e-59 233.0 274 45.6
HPP92_020032 Vanilla planifolia HOM05D003612 ORTHO05D004323 4.0e-59 232.6 211 50.2
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 6.8e-59 231.9 250 46.4
AUR62029731 Chenopodium quinoa HOM05D003612 ORTHO05D004323 1.5e-58 230.7 292 41.1
Sp5g05240 Schrenkiella parvula HOM05D003612 ORTHO05D004323 1.5e-58 230.7 270 43.0
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 2.0e-58 230.3 224 49.1
THA.LOC104802043 Tarenaya hassleriana HOM05D003612 ORTHO05D004323 3.4e-58 229.6 271 43.9
CARHR167560 Cardamine hirsuta HOM05D003612 ORTHO05D004323 4.4e-58 229.2 271 41.7
PSO648G0079 Papaver somniferum HOM05D003612 ORTHO05D004323 1.7e-57 227.3 266 48.1
EL10Ac6g13255 Beta vulgaris HOM05D003612 ORTHO05D004323 2.9e-57 226.5 283 42.4
Os09g0504800 Oryza sativa ssp. japonica HOM05D003612 ORTHO05D004323 6.4e-57 225.3 255 42.7
A09p50260 Brassica napus HOM05D003612 ORTHO05D004323 8.3e-57 224.9 270 41.5
BraA09t40476Z Brassica rapa HOM05D003612 ORTHO05D004323 8.3e-57 224.9 270 41.5
MELO3C030712.2 Cucumis melo HOM05D003612 ORTHO05D004323 8.3e-57 224.9 131 81.7
Sc04g0007910 Simmondsia chinensis HOM05D003612 ORTHO05D004323 8.3e-57 224.9 179 58.1
Aa31LG10G12210 Aethionema arabicum HOM05D000708 ORTHO05D004323 1.4e-56 224.2 255 43.1
A04p03190 Brassica napus HOM05D003612 ORTHO05D004323 1.9e-56 223.8 280 40.0
C08p32750 Brassica napus HOM05D003612 ORTHO05D004323 1.9e-56 223.8 270 43.0
BolC8t50886H Brassica oleracea HOM05D003612 ORTHO05D004323 1.9e-56 223.8 270 43.0
Thhalv10006455m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 2.4e-56 223.4 243 43.2
PSO210G2319 Papaver somniferum HOM05D003612 ORTHO05D004323 2.4e-56 223.4 279 45.5
ECA236G0894 Erigeron canadensis HOM05D003612 ORTHO05D004323 9.2e-56 221.5 257 46.7
Ah.03g134750 Amaranthus hybridus HOM05D003612 ORTHO05D004323 1.2e-55 221.1 285 43.2
ATR0829G008 Amborella trichopoda HOM05D003612 ORTHO05D004323 2.1e-55 220.3 316 41.5
Prupe.5G048800 Prunus persica HOM05D003612 ORTHO05D004323 3.5e-55 219.5 214 47.2
PSO210G3983 Papaver somniferum HOM05D003612 ORTHO05D004323 1.0e-54 218.0 257 45.9
PGSC0003DMG400011936 Solanum tuberosum HOM05D003612 ORTHO05D004323 1.0e-54 218.0 273 43.2
Aa31LG1G13790 Aethionema arabicum HOM05D003612 ORTHO05D004323 1.3e-54 217.6 255 43.1
unitig_52.g17667 Utricularia gibba HOM05D003612 ORTHO05D004323 5.1e-54 215.7 241 46.5
AT3G02370 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 8.6e-54 214.9 211 47.4
AUR62032829 Chenopodium quinoa HOM05D003612 ORTHO05D004323 1.9e-53 213.8 277 40.8
BcaC07g40390 Brassica carinata HOM05D003612 ORTHO05D004323 3.3e-53 213.0 212 47.2
Phvul.008G158112 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 1.2e-52 211.1 226 46.5
BcaB02g08320 Brassica carinata HOM05D003612 ORTHO05D004323 1.6e-52 210.7 221 43.0
Sopen03g026330 Solanum pennellii HOM05D003612 ORTHO05D004323 2.1e-52 210.3 313 39.9
Duzib128G0868 Durio zibethinus HOM05D003612 ORTHO05D004323 2.8e-52 209.9 272 44.1
Thhalv10009639m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 3.6e-52 209.5 270 41.1
Thhalv10008553m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 1.1e-51 208.0 212 44.8
PSO339G0745 Papaver somniferum HOM05D003612 ORTHO05D004323 6.8e-51 205.3 232 48.7
TAR369G0664 Trochodendron aralioides HOM05D003612 ORTHO05D004323 8.4e-49 198.4 171 53.8
Glyma.07G129400 Glycine max HOM05D003612 ORTHO05D004323 1.4e-48 197.6 281 39.5
Gohir.D01G184300 Gossypium hirsutum HOM05D003612 ORTHO05D004323 1.4e-48 197.6 181 50.8
Peaxi162Scf00244g00019 Petunia axillaris HOM05D003612 ORTHO05D004323 1.4e-48 197.6 179 52.0
Thhalv10009908m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 3.2e-48 196.4 259 40.5
Lj1C1128T4 Lonicera japonica HOM05D003612 ORTHO05D004323 2.7e-47 193.4 159 56.6
BolC8t50888H Brassica oleracea HOM05D003612 ORTHO05D004323 2.5e-45 186.8 268 37.7
Eucgr.A02319 Eucalyptus grandis HOM05D003612 ORTHO05D004323 4.7e-44 182.6 268 39.6
AUR62005836 Chenopodium quinoa HOM05D000760 ORTHO05D004323 8.9e-43 178.3 243 39.9
GSVIVG01033245001 Vitis vinifera HOM05D003612 ORTHO05D004323 1.1e-40 171.4 155 54.2
CDE09G0671 Ceratophyllum demersum HOM05D003612 ORTHO05D004323 2.4e-40 170.2 239 41.0
PSO339G0740 Papaver somniferum HOM05D003612 ORTHO05D004323 3.2e-40 169.9 182 50.0
MD14G1076600 Malus domestica HOM05D003612 ORTHO05D004323 3.5e-39 166.4 241 40.2
PSO339G6630 Papaver somniferum HOM05D003612 ORTHO05D004323 1.5e-37 161.0 222 45.5
CSS0020602 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 1.9e-37 160.6 180 46.7
SMO364G0364 Selaginella moellendorffii HOM05D003612 ORTHO05D004323 3.6e-36 156.4 222 36.5
BcaNung07094 Brassica carinata HOM05D003612 ORTHO05D004323 5.3e-35 152.5 168 42.9
AagrBONN_evm.TU.Sc2ySwM_368.1563 Anthoceros agrestis HOM05D003612 ORTHO05D004323 1.7e-33 147.5 302 30.1
Ah.02g117470 Amaranthus hybridus HOM05D003612 ORTHO05D004323 3.8e-33 146.4 238 39.1
SGA_v2.0_scaffold1G00588 Striga asiatica HOM05D003612 ORTHO05D004323 6.4e-33 145.6 221 38.5
Mapoly0007s0121 Marchantia polymorpha HOM05D003612 ORTHO05D004323 1.9e-32 144.1 320 30.9
Nn2g10440 Nelumbo nucifera HOM05D003612 ORTHO05D004323 2.7e-31 140.2 122 58.2
SEGI_02185 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 5.1e-30 136.0 240 33.3
Nitab4.5_0001598g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 4.0e-27 126.3 196 41.3
Pp3c3_37380 Physcomitrium patens HOM05D003612 ORTHO05D004323 9.0e-27 125.2 237 31.2
PSO339G4790 Papaver somniferum HOM05D003612 ORTHO05D004323 1.5e-26 124.4 168 44.6
Glyma.19G136600 Glycine max HOM05D003612 ORTHO05D004323 6.4e-25 119.0 262 31.3
Solyc03g096220.3 Solanum lycopersicum HOM05D003612 ORTHO05D004323 6.4e-25 119.0 85 61.2
RcHm_v2.0_Chr1g0361791 Rosa chinensis HOM05D003612 ORTHO05D004323 1.9e-24 117.5 136 41.9
Eucgr.A02317 Eucalyptus grandis HOM05D003612 ORTHO05D004323 2.7e-23 113.6 81 61.7
BcaNung07092 Brassica carinata HOM05D003612 ORTHO05D004323 1.3e-22 111.3 267 28.5
C08p32770 Brassica napus HOM05D003612 ORTHO05D004323 4.3e-21 106.3 268 28.4
Duzib093G1009 Durio zibethinus HOM05D003612 ORTHO05D004323 1.3e-20 104.8 74 60.8
CsaV3_3G040730 Cucumis sativus L. HOM05D003612 ORTHO05D004323 2.1e-20 104.0 66 80.3
Glyma.03G134401 Glycine max HOM05D003612 ORTHO05D004323 2.9e-17 93.6 94 47.9
PGSC0003DMG400013536 Solanum tuberosum HOM05D003612 ORTHO05D004323 1.1e-16 91.7 90 55.6
Peaxi162Scf00002g03215 Petunia axillaris HOM05D003612 ORTHO05D004323 5.5e-16 89.4 145 37.2
CBR_g2822 Chara braunii HOM05D000019 ORTHO05D000048 9.3e-16 88.6 215 29.8
QL07p002858 Quercus lobata HOM05D003612 ORTHO05D004323 1.8e-14 84.3 132 36.4
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 1.5e-13 81.3 122 39.3
Lj1A1128T58 Lonicera japonica HOM05D003612 ORTHO05D004323 1.4e-11 74.7 46 71.7
SEGI_36865 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 9.0e-11 72.0 92 44.6
CAN.G125.23 Capsicum annuum HOM05D000107 ORTHO05D000062 1.5e-10 71.2 137 33.6
Lj1A1127T48 Lonicera japonica HOM05D003612 ORTHO05D004323 3.4e-10 70.1 41 73.2
Actinidia09310 Actinidia chinensis HOM05D003612 ORTHO05D004323 1.2e-07 61.6 44 59.1
Cfa015703 Carpinus fangiana HOM05D003612 ORTHO05D004323 3.6e-07 60.1 59 50.8


User provided reference genes

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