Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025014.2 Cucumis melo HOM05D006203 ORTHO05D007675 1.9e-248 862.1 430 100.0
CsaV3_6G002690 Cucumis sativus L. HOM05D006203 ORTHO05D007675 1.2e-242 842.8 430 97.4
ClCG08G002400 Citrullus lanatus HOM05D006203 ORTHO05D007675 1.3e-233 812.8 430 94.2
Sed0022684 Sechium edule HOM05D006203 ORTHO05D007675 3.1e-219 765.0 430 85.8
Potri.005G193300 Populus trichocarpa HOM05D006203 ORTHO05D007675 3.7e-204 714.9 431 81.0
QL02p038832 Quercus lobata HOM05D006203 ORTHO05D007675 9.3e-200 700.3 429 79.5
Sabra05G0147700 Salix brachista HOM05D006203 ORTHO05D007675 9.3e-200 700.3 431 79.8
Thecc.08G154300 Theobroma cacao HOM05D006203 ORTHO05D007675 6.0e-199 697.6 430 78.8
Potri.002G066900 Populus trichocarpa HOM05D006203 ORTHO05D007675 6.7e-198 694.1 433 78.5
TWI60G1081 Tripterygium wilfordii HOM05D006203 ORTHO05D007675 1.1e-197 693.3 431 79.4
Eucgr.F04230 Eucalyptus grandis HOM05D006203 ORTHO05D007675 2.8e-196 688.7 431 78.0
CANSAT25G3154 Cannabis sativa HOM05D006203 ORTHO05D007675 8.2e-196 687.2 431 78.4
CiPaw.16G011200 Carya illinoinensis HOM05D006203 ORTHO05D007675 1.4e-195 686.4 430 79.1
Duzib116G0092 Durio zibethinus HOM05D006203 ORTHO05D007675 1.8e-195 686.0 430 77.7
Cpa.g.sc21.210 Carica papaya HOM05D006203 ORTHO05D007675 1.5e-194 682.9 427 78.0
Hma1.2p1_0105F.1_g050570 Hydrangea macrophylla HOM05D006203 ORTHO05D007675 3.4e-194 681.8 434 77.0
Cfa018314 Carpinus fangiana HOM05D006203 ORTHO05D007675 6.1e-191 671.0 430 77.0
COL.COLO4_29853 Corchorus olitorius HOM05D006203 ORTHO05D007675 1.1e-189 666.8 461 71.6
Manes.02G180400 Manihot esculenta HOM05D006203 ORTHO05D007675 1.1e-189 666.8 421 77.9
Gorai.002G055700 Gossypium raimondii HOM05D006203 ORTHO05D007675 2.5e-189 665.6 430 75.3
Ciclev10001246m.g Citrus clementina HOM05D006203 ORTHO05D007675 3.3e-189 665.2 431 75.6
Gohir.D03G060606 Gossypium hirsutum HOM05D006203 ORTHO05D007675 9.7e-189 663.7 430 75.1
Lj5g0013006 Lotus japonicus HOM05D006203 ORTHO05D007675 3.7e-188 661.8 432 76.4
Gohir.A02G112707 Gossypium hirsutum HOM05D006203 ORTHO05D007675 4.8e-188 661.4 430 74.9
GSVIVG01034547001 Vitis vinifera HOM05D006203 ORTHO05D007675 4.8e-188 661.4 421 76.2
Glyma.20G167800 Glycine max HOM05D006203 ORTHO05D007675 2.4e-187 659.1 433 76.0
Prupe.8G033400 Prunus persica HOM05D006203 ORTHO05D007675 6.9e-187 657.5 430 76.0
CSS0037443 Camellia sinensis var. sinensis HOM05D006203 ORTHO05D007675 2.6e-186 655.6 421 75.3
VMungo0720G1833 Vigna mungo HOM05D006203 ORTHO05D007675 3.4e-186 655.2 430 75.3
Atru.chr13.2086 Acer truncatum HOM05D006203 ORTHO05D007675 4.5e-186 654.8 421 75.8
MD10G1028400 Malus domestica HOM05D006203 ORTHO05D007675 5.9e-186 654.4 430 74.2
CSS0039383 Camellia sinensis var. sinensis HOM05D006203 ORTHO05D007675 1.0e-185 653.7 421 75.3
Actinidia29535 Actinidia chinensis HOM05D006203 ORTHO05D007675 1.3e-185 653.3 433 73.4
PGR044G2231 Punica granatum HOM05D006203 ORTHO05D007675 2.5e-184 649.0 421 75.5
PGR100G0007 Punica granatum HOM05D006203 ORTHO05D007675 2.5e-184 649.0 421 75.5
TAR628G0500 Trochodendron aralioides HOM05D006203 ORTHO05D007675 2.5e-184 649.0 421 75.1
Ca_10680_v3 Cicer arietinum L. HOM05D006203 ORTHO05D007675 4.2e-184 648.3 430 76.3
Rhsim04G0148800 Rhododendron simsii HOM05D006203 ORTHO05D007675 9.4e-184 647.1 439 72.9
TPR.G17026 Trifolium pratense HOM05D006203 ORTHO05D007675 1.6e-183 646.4 430 74.4
MD05G1027600 Malus domestica HOM05D006203 ORTHO05D007675 4.7e-183 644.8 430 73.7
Medtr1g098650 Medicago truncatula HOM05D006203 ORTHO05D007675 6.1e-183 644.4 421 75.3
EL10Ac1g01566 Beta vulgaris HOM05D006203 ORTHO05D007675 1.4e-182 643.3 430 72.1
Phvul.007G080700 Phaseolus vulgaris HOM05D006203 ORTHO05D007675 2.3e-182 642.5 432 73.8
Lj4C698G9 Lonicera japonica HOM05D006203 ORTHO05D007675 3.9e-182 641.7 433 72.1
AUR62026688 Chenopodium quinoa HOM05D006203 ORTHO05D007675 6.7e-182 641.0 433 70.7
MBI09_g13282_MAGBIO Magnolia biondii HOM05D006203 ORTHO05D007675 1.1e-181 640.2 421 73.9
AUR62040604 Chenopodium quinoa HOM05D006203 ORTHO05D007675 5.7e-181 637.9 433 70.0
Glyma.10G224051 Glycine max HOM05D006203 ORTHO05D007675 1.7e-180 636.3 417 75.3
Psat1g027320 Pisum sativum HOM05D006203 ORTHO05D007675 1.7e-180 636.3 430 73.7
RcHm_v2.0_Chr6g0275101 Rosa chinensis HOM05D006203 ORTHO05D007675 2.0e-178 629.4 429 71.1
PSO063G4112 Papaver somniferum HOM05D006203 ORTHO05D007675 8.5e-177 624.0 433 69.7
PSO017G3146 Papaver somniferum HOM05D006203 ORTHO05D007675 1.1e-176 623.6 433 69.7
Nitab4.5_0002497g0040 Nicotiana tabacum HOM05D006203 ORTHO05D007675 1.4e-176 623.2 422 72.3
CDE06G0803 Ceratophyllum demersum HOM05D006203 ORTHO05D007675 1.9e-176 622.9 429 69.2
Lalb_Chr21g0305501 Lupinus albus HOM05D006203 ORTHO05D007675 4.2e-176 621.7 430 71.4
THA.LOC104803037 Tarenaya hassleriana HOM05D006203 ORTHO05D007675 4.2e-176 621.7 430 70.5
Oeu002058.2 Olea europaea HOM05D006203 ORTHO05D007675 7.2e-176 620.9 450 69.8
Sopen04g027530 Solanum pennellii HOM05D006203 ORTHO05D007675 7.2e-176 620.9 422 72.0
Thhalv10004157m.g Eutrema salsugineum HOM05D006203 ORTHO05D007675 2.1e-175 619.4 422 72.3
Solyc04g071550.2 Solanum lycopersicum HOM05D006203 ORTHO05D007675 4.7e-175 618.2 422 71.6
PGSC0003DMG402024096 Solanum tuberosum HOM05D006203 ORTHO05D007675 1.0e-174 617.1 422 71.3
CAN.G1215.8 Capsicum annuum HOM05D006203 ORTHO05D007675 2.3e-174 615.9 422 71.6
SGA_v2.0_scaffold24G10302 Striga asiatica HOM05D006203 ORTHO05D007675 3.9e-174 615.1 422 71.1
Aa31LG6G9900 Aethionema arabicum HOM05D006203 ORTHO05D007675 8.8e-174 614.0 421 71.7
BcaB07g33983 Brassica carinata HOM05D006203 ORTHO05D007675 8.8e-174 614.0 422 72.0
SalBow7G3786 Salvia bowleyana HOM05D006203 ORTHO05D007675 4.4e-173 611.7 422 70.4
BcaC03g14869 Brassica carinata HOM05D006203 ORTHO05D007675 5.7e-173 611.3 422 72.0
BolC2t08473H Brassica oleracea HOM05D006203 ORTHO05D007675 5.7e-173 611.3 422 72.0
AL1G51640 Arabidopsis lyrata HOM05D006203 ORTHO05D007675 7.4e-173 610.9 422 71.8
C02p23400 Brassica napus HOM05D006203 ORTHO05D007675 7.4e-173 610.9 422 72.0
Hund17446 Selenicereus undatus HOM05D006203 ORTHO05D007675 7.4e-173 610.9 469 64.4
SalBow7G2343 Salvia bowleyana HOM05D006203 ORTHO05D007675 1.3e-172 610.1 422 70.4
Carub.0001s3458 Capsella rubella HOM05D006203 ORTHO05D007675 1.7e-172 609.8 422 71.6
A02p14450 Brassica napus HOM05D006203 ORTHO05D007675 4.8e-172 608.2 422 72.0
FvH4_2g13470 Fragaria vesca HOM05D006203 ORTHO05D007675 4.8e-172 608.2 421 71.5
Nitab4.5_0001187g0150 Nicotiana tabacum HOM05D006203 ORTHO05D007675 8.2e-172 607.4 445 68.1
AT1G43580 Arabidopsis thaliana HOM05D006203 ORTHO05D007675 1.1e-171 607.1 422 71.8
Sp1g32440 Schrenkiella parvula HOM05D006203 ORTHO05D007675 1.1e-171 607.1 422 71.6
DCAR_014434 Daucus carota HOM05D006203 ORTHO05D007675 7.0e-171 604.4 428 68.0
DCAR_014436 Daucus carota HOM05D006203 ORTHO05D007675 7.0e-171 604.4 428 68.0
CARHR035390 Cardamine hirsuta HOM05D006203 ORTHO05D007675 2.0e-170 602.8 422 69.2
FAN24G2615 Fragaria x ananassa HOM05D006203 ORTHO05D007675 4.5e-170 601.7 421 70.8
FAN27G1038 Fragaria x ananassa HOM05D006203 ORTHO05D007675 5.9e-170 601.3 421 71.0
arahy.Tifrunner.gnm1.ann1.1SB772 Arachis hypogaea HOM05D006203 ORTHO05D007675 7.7e-170 600.9 435 68.7
FAN15G3573 Fragaria x ananassa HOM05D006203 ORTHO05D007675 1.7e-169 599.7 421 71.0
arahy.Tifrunner.gnm1.ann1.YI7QGP Arachis hypogaea HOM05D006203 ORTHO05D007675 3.8e-169 598.6 427 69.1
vmacro12408 Vaccinium macrocarpon HOM05D006203 ORTHO05D007675 3.8e-169 598.6 531 59.7
Zm00001eb062160 Zea mays HOM05D006203 ORTHO05D007675 1.1e-168 597.0 421 67.5
Migut.C00987 Erythranthe guttata HOM05D006203 ORTHO05D007675 1.2e-167 593.6 422 68.5
Ah.05g168000 Amaranthus hybridus HOM05D006203 ORTHO05D007675 2.7e-167 592.4 421 69.6
Os04g0423700 Oryza sativa ssp. japonica HOM05D006203 ORTHO05D007675 6.1e-167 591.3 421 67.2
Lsat_1_v5_gn_9_41100 Lactuca sativa HOM05D006203 ORTHO05D007675 1.2e-165 587.0 422 67.3
Oeu051272.1 Olea europaea HOM05D006203 ORTHO05D007675 4.8e-164 581.6 418 69.6
HanXRQChr11g0320311 Helianthus annuus HOM05D006203 ORTHO05D007675 1.6e-162 576.6 422 66.4
ATR0820G052 Amborella trichopoda HOM05D006203 ORTHO05D007675 3.8e-161 572.0 421 66.3
Peaxi162Scf00599g00123 Petunia axillaris HOM05D006203 ORTHO05D007675 3.6e-159 565.5 422 67.3
ECA232G0861 Erigeron canadensis HOM05D006203 ORTHO05D007675 4.7e-159 565.1 422 64.9
Aqoxy5G02059 Aquilegia oxysepala HOM05D006203 ORTHO05D007675 4.4e-157 558.5 428 65.9
Sed0004557 Sechium edule HOM05D006203 ORTHO05D007675 4.4e-157 558.5 434 68.2
Zm00001eb243320 Zea mays HOM05D006203 ORTHO05D007675 5.4e-155 551.6 429 61.5
Os02g0543100 Oryza sativa ssp. japonica HOM05D006203 ORTHO05D007675 2.5e-152 542.7 418 64.6
SEGI_28248 Sequoiadendron giganteum HOM05D006203 ORTHO05D007675 1.5e-149 533.5 425 62.8
Haze_17763 Corylus avellana HOM05D006203 ORTHO05D007675 1.3e-145 520.4 337 76.0
HPP92_014433 Vanilla planifolia HOM05D006203 ORTHO05D007675 8.9e-142 507.7 435 60.2
AagrBONN_evm.TU.Sc2ySwM_344.5191 Anthoceros agrestis HOM05D006203 ORTHO05D007675 2.0e-141 506.5 424 58.3
Cc10_g14900 Coffea canephora HOM05D006203 ORTHO05D007675 4.4e-141 505.4 358 67.6
SMO165G0112 Selaginella moellendorffii HOM05D006203 ORTHO05D007675 1.3e-140 503.8 429 58.3
unitig_82.g27121 Utricularia gibba HOM05D006203 ORTHO05D007675 4.4e-133 478.8 432 58.8
Pp3c10_9040 Physcomitrium patens HOM05D006203 ORTHO05D007675 2.4e-131 473.0 427 54.3
Mapoly0036s0040 Marchantia polymorpha HOM05D006203 ORTHO05D007675 4.6e-130 468.8 426 53.1
SHI09072 Sapria himalayana HOM05D006203 ORTHO05D007675 6.8e-126 454.9 356 64.9
Dinv41071 Davidia involucrata HOM05D006203 ORTHO05D007675 1.5e-125 453.8 273 79.5
Sc02g0003970 Simmondsia chinensis HOM05D006203 ORTHO05D007675 1.5e-125 453.8 298 73.5
Pp3c1_26540 Physcomitrium patens HOM05D006203 ORTHO05D007675 5.6e-120 435.3 429 49.4
Dinv41073 Davidia involucrata HOM05D006203 ORTHO05D007675 2.9e-116 422.9 267 76.4
BcaC08g42813 Brassica carinata HOM05D006203 ORTHO05D007675 4.9e-116 422.2 422 55.2
Nn5g28766 Nelumbo nucifera HOM05D006203 ORTHO05D007675 6.7e-89 332.0 197 81.7
CBR_g4804 Chara braunii HOM05D006203 ORTHO05D007675 1.3e-81 307.8 425 44.0
Zm00001eb440740 Zea mays HOM05D006203 ORTHO05D007675 5.5e-75 285.8 234 57.3
C06p00250 Brassica napus HOM05D006203 ORTHO05D007675 2.4e-70 270.4 294 51.4
MSTRG.1091 Avicennia marina HOM05D006203 ORTHO05D007675 2.1e-66 257.3 186 68.3
Dinv41070 Davidia involucrata HOM05D006203 ORTHO05D007675 1.0e-49 201.8 140 72.9
SHI09073 Sapria himalayana HOM05D006203 ORTHO05D007675 1.1e-30 138.7 90 70.0
PGSC0003DMG401024096 Solanum tuberosum HOM05D006203 ORTHO05D007675 3.2e-30 137.1 88 70.5
BraA02t06509Z Brassica rapa HOM05D006203 ORTHO05D007675 7.8e-29 132.5 88 71.6
Peaxi162Scf00599g00124 Petunia axillaris HOM05D006203 ORTHO05D007675 1.8e-25 121.3 89 65.2
Cre01.g033050 Chlamydomonas reinhardtii HOM05D006203 ORTHO05D007675 4.9e-15 86.7 370 26.8
PSO063G4868 Papaver somniferum HOM05D006203 ORTHO05D007675 2.3e-09 67.8 92 42.4
CSS0028086 Camellia sinensis var. sinensis HOM05D001336 ORTHO05D001211 1.7e-07 61.6 41 63.4


User provided reference genes

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