Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024899.2 Cucumis melo HOM05D004814 ORTHO05D005778 2.8e-129 465.3 238 100.0
CsaV3_7G018640 Cucumis sativus L. HOM05D004814 ORTHO05D005778 2.3e-107 392.5 207 97.1
ClCG09G021040 Citrullus lanatus HOM05D004814 ORTHO05D005778 8.8e-107 390.6 207 97.1
Sed0017349 Sechium edule HOM05D004814 ORTHO05D005778 5.0e-94 348.2 208 88.0
CANSAT11G0174 Cannabis sativa HOM05D004814 ORTHO05D005778 6.1e-76 288.1 208 75.5
Cfa020215 Carpinus fangiana HOM05D004814 ORTHO05D005778 1.4e-75 287.0 207 73.4
QL08p004842 Quercus lobata HOM05D004814 ORTHO05D005778 1.8e-75 286.6 207 75.4
CiPaw.12G136400 Carya illinoinensis HOM05D004814 ORTHO05D005778 6.8e-75 284.6 207 73.4
Dinv40842 Davidia involucrata HOM05D004814 ORTHO05D005778 4.4e-74 282.0 208 74.5
arahy.Tifrunner.gnm1.ann1.CWZH2K Arachis hypogaea HOM05D004814 ORTHO05D005778 8.3e-73 277.7 214 71.0
TAR629G3287 Trochodendron aralioides HOM05D004814 ORTHO05D005778 1.1e-72 277.3 207 72.5
arahy.Tifrunner.gnm1.ann1.0CA1AM Arachis hypogaea HOM05D004814 ORTHO05D005778 3.1e-72 275.8 207 72.0
FvH4_3g29500 Fragaria vesca HOM05D004814 ORTHO05D005778 2.0e-71 273.1 208 75.5
FAN11G3417 Fragaria x ananassa HOM05D004814 ORTHO05D005778 2.0e-71 273.1 208 75.5
FAN16G2593 Fragaria x ananassa HOM05D004814 ORTHO05D005778 2.0e-71 273.1 208 75.5
FAN25G3790 Fragaria x ananassa HOM05D004814 ORTHO05D005778 4.5e-71 271.9 208 75.5
arahy.Tifrunner.gnm1.ann1.X98J9H Arachis hypogaea HOM05D004814 ORTHO05D005778 5.9e-71 271.6 206 71.4
FAN21G1289 Fragaria x ananassa HOM05D004814 ORTHO05D005778 1.0e-70 270.8 208 75.0
MD03G1187000 Malus domestica HOM05D004814 ORTHO05D005778 2.3e-70 269.6 208 71.6
Dinv10318 Davidia involucrata HOM05D004814 ORTHO05D005778 3.8e-70 268.9 208 73.1
TAR626G1431 Trochodendron aralioides HOM05D004814 ORTHO05D005778 5.0e-70 268.5 207 72.5
Manes.15G061900 Manihot esculenta HOM05D004814 ORTHO05D005778 6.6e-70 268.1 219 68.0
RcHm_v2.0_Chr5g0054381 Rosa chinensis HOM05D004814 ORTHO05D005778 2.5e-69 266.2 209 74.6
arahy.Tifrunner.gnm1.ann1.RG8M6K Arachis hypogaea HOM05D004814 ORTHO05D005778 4.2e-69 265.4 207 69.6
Manes.03G139872 Manihot esculenta HOM05D004814 ORTHO05D005778 4.2e-69 265.4 211 68.2
Hma1.2p1_0889F.1_g232870 Hydrangea macrophylla HOM05D004814 ORTHO05D005778 7.2e-69 264.6 220 70.0
Nn1g03216 Nelumbo nucifera HOM05D004814 ORTHO05D005778 7.2e-69 264.6 207 71.0
Glyma.08G327500 Glycine max HOM05D004814 ORTHO05D005778 2.1e-68 263.1 214 71.0
Haze_09803 Corylus avellana HOM05D004814 ORTHO05D005778 3.6e-68 262.3 207 71.0
CSS0025876 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 1.0e-67 260.8 210 73.3
GSVIVG01014640001 Vitis vinifera HOM05D004814 ORTHO05D005778 1.0e-67 260.8 209 70.8
Glyma.18G079900 Glycine max HOM05D004814 ORTHO05D005778 1.4e-67 260.4 207 72.0
PSO541G0969 Papaver somniferum HOM05D004814 ORTHO05D005778 8.9e-67 257.7 209 67.9
PSO675G8482 Papaver somniferum HOM05D004814 ORTHO05D005778 8.9e-67 257.7 211 68.2
TWI38G0785 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 7.5e-66 254.6 218 67.4
Lalb_Chr05g0211691 Lupinus albus HOM05D004814 ORTHO05D005778 1.3e-65 253.8 210 67.6
Potri.011G092800 Populus trichocarpa HOM05D004814 ORTHO05D005778 2.2e-65 253.1 207 65.7
Sabra11G0087000 Salix brachista HOM05D004814 ORTHO05D005778 2.2e-65 253.1 210 66.2
Potri.001G365600 Populus trichocarpa HOM05D004814 ORTHO05D005778 2.8e-65 252.7 207 65.2
TWI39G1010 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 4.9e-65 251.9 212 68.4
Ca_20138_v3 Cicer arietinum L. HOM05D004814 ORTHO05D005778 8.3e-65 251.1 208 68.3
Actinidia30418 Actinidia chinensis HOM05D004814 ORTHO05D005778 1.8e-64 250.0 209 68.4
DCAR_013223 Daucus carota HOM05D004814 ORTHO05D005778 3.1e-64 249.2 211 69.7
MD11G1202000 Malus domestica HOM05D004814 ORTHO05D005778 7.0e-64 248.1 208 67.3
Prupe.4G239600 Prunus persica HOM05D004814 ORTHO05D005778 1.2e-63 247.3 208 67.8
Aa31LG8G330 Aethionema arabicum HOM05D004814 ORTHO05D005778 1.6e-63 246.9 211 66.8
Phvul.001G030600 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 1.6e-63 246.9 209 66.5
Phvul.006G055300 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 1.6e-63 246.9 209 66.5
TPR.G30737 Trifolium pratense HOM05D004814 ORTHO05D005778 1.6e-63 246.9 208 66.3
THA.LOC104822735 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 3.5e-63 245.7 209 68.4
Sabra16G0239200 Salix brachista HOM05D004814 ORTHO05D005778 5.9e-63 245.0 211 64.5
Actinidia05019 Actinidia chinensis HOM05D004814 ORTHO05D005778 1.3e-62 243.8 209 67.0
THA.LOC104810287 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 1.7e-62 243.4 210 66.7
Rhsim06G0227300 Rhododendron simsii HOM05D004814 ORTHO05D005778 2.9e-62 242.7 209 65.1
vmacro22713 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 3.8e-62 242.3 209 65.6
Carub.0003s1246 Capsella rubella HOM05D004814 ORTHO05D005778 1.9e-61 240.0 217 63.1
CARHR087710 Cardamine hirsuta HOM05D004814 ORTHO05D005778 1.9e-61 240.0 209 65.6
BolC5t34154H Brassica oleracea HOM05D004814 ORTHO05D005778 2.5e-61 239.6 211 64.9
AL3G24860 Arabidopsis lyrata HOM05D004814 ORTHO05D005778 3.3e-61 239.2 211 65.4
AT3G13120 Arabidopsis thaliana HOM05D004814 ORTHO05D005778 4.3e-61 238.8 212 64.6
Oeu057089.1 Olea europaea HOM05D004814 ORTHO05D005778 4.3e-61 238.8 209 63.6
Psat5g170120 Pisum sativum HOM05D004814 ORTHO05D005778 4.3e-61 238.8 210 64.8
BcaB06g25486 Brassica carinata HOM05D004814 ORTHO05D005778 5.6e-61 238.4 209 66.0
Sc16g0007970 Simmondsia chinensis HOM05D004814 ORTHO05D005778 5.6e-61 238.4 207 65.7
Atru.chr2.3664 Acer truncatum HOM05D004814 ORTHO05D005778 7.3e-61 238.0 210 66.2
EL10Ac4g07605 Beta vulgaris HOM05D004814 ORTHO05D005778 7.3e-61 238.0 212 66.5
C03p46130 Brassica napus HOM05D004814 ORTHO05D005778 7.3e-61 238.0 209 67.0
BraA03t12957Z Brassica rapa HOM05D004814 ORTHO05D005778 7.3e-61 238.0 213 64.3
BcaC01g04010 Brassica carinata HOM05D004814 ORTHO05D005778 9.5e-61 237.7 209 66.5
BolC3t16886H Brassica oleracea HOM05D004814 ORTHO05D005778 9.5e-61 237.7 209 66.5
Hund01909 Selenicereus undatus HOM05D004814 ORTHO05D005778 1.2e-60 237.3 207 66.2
BcaC05g29209 Brassica carinata HOM05D004814 ORTHO05D005778 1.6e-60 236.9 211 64.5
C05p54820 Brassica napus HOM05D004814 ORTHO05D005778 1.6e-60 236.9 211 64.5
Thhalv10021566m.g Eutrema salsugineum HOM05D004814 ORTHO05D005778 1.6e-60 236.9 211 64.9
A03p38040 Brassica napus HOM05D004814 ORTHO05D005778 2.1e-60 236.5 213 63.8
Ciclev10009615m.g Citrus clementina HOM05D004814 ORTHO05D005778 2.1e-60 236.5 210 67.1
Cc05_g14790 Coffea canephora HOM05D004814 ORTHO05D005778 2.1e-60 236.5 195 66.7
THA.LOC104815700 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 2.1e-60 236.5 216 67.1
PGSC0003DMG400014378 Solanum tuberosum HOM05D004814 ORTHO05D005778 2.8e-60 236.1 211 64.0
BraA05t22442Z Brassica rapa HOM05D004814 ORTHO05D005778 3.6e-60 235.7 211 64.9
Sopen10g001990 Solanum pennellii HOM05D004814 ORTHO05D005778 3.6e-60 235.7 209 63.6
Lsat_1_v5_gn_9_90400 Lactuca sativa HOM05D004814 ORTHO05D005778 8.0e-60 234.6 214 65.9
Oeu049351.1 Olea europaea HOM05D004814 ORTHO05D005778 8.0e-60 234.6 209 64.6
Thecc.07G016800 Theobroma cacao HOM05D004814 ORTHO05D005778 8.0e-60 234.6 214 65.9
Sp3g11290 Schrenkiella parvula HOM05D004814 ORTHO05D005778 1.0e-59 234.2 213 63.8
A01p40420 Brassica napus HOM05D004814 ORTHO05D005778 1.4e-59 233.8 214 63.6
BraA01t04077Z Brassica rapa HOM05D004814 ORTHO05D005778 1.4e-59 233.8 214 63.6
COL.COLO4_09806 Corchorus olitorius HOM05D004814 ORTHO05D005778 1.4e-59 233.8 208 66.8
A05p36420 Brassica napus HOM05D004814 ORTHO05D005778 1.8e-59 233.4 211 64.5
Medtr3g058430 Medicago truncatula HOM05D004814 ORTHO05D005778 2.3e-59 233.0 211 64.9
Gorai.007G310400 Gossypium raimondii HOM05D004814 ORTHO05D005778 3.1e-59 232.6 212 66.0
PGR031G1774 Punica granatum HOM05D004814 ORTHO05D005778 4.0e-59 232.3 209 64.6
Aa31LG10G250 Aethionema arabicum HOM05D004814 ORTHO05D005778 5.2e-59 231.9 211 64.9
BcaNung05270 Brassica carinata HOM05D004814 ORTHO05D005778 5.2e-59 231.9 211 64.0
Gohir.D11G287000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 5.2e-59 231.9 212 66.0
Solyc10g006030.3 Solanum lycopersicum HOM05D004814 ORTHO05D005778 5.2e-59 231.9 209 63.2
Nitab4.5_0006756g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 8.9e-59 231.1 211 63.0
Duzib213G0234 Durio zibethinus HOM05D004814 ORTHO05D005778 1.2e-58 230.7 207 65.2
AUR62036421 Chenopodium quinoa HOM05D004814 ORTHO05D005778 3.4e-58 229.2 214 64.5
AUR62036427 Chenopodium quinoa HOM05D004814 ORTHO05D005778 3.4e-58 229.2 214 64.5
AUR62040646 Chenopodium quinoa HOM05D004814 ORTHO05D005778 3.4e-58 229.2 214 64.5
Gohir.A11G276900 Gossypium hirsutum HOM05D004814 ORTHO05D005778 3.4e-58 229.2 212 64.6
CAN.G492.31 Capsicum annuum HOM05D004814 ORTHO05D005778 4.4e-58 228.8 212 64.6
Aqoxy4G02247 Aquilegia oxysepala HOM05D004814 ORTHO05D005778 5.8e-58 228.4 213 63.8
Gohir.D01G075300 Gossypium hirsutum HOM05D004814 ORTHO05D005778 7.5e-58 228.0 209 66.5
Gorai.002G098500 Gossypium raimondii HOM05D004814 ORTHO05D005778 7.5e-58 228.0 209 66.5
Gohir.A01G090000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 9.8e-58 227.6 209 66.0
AUR62017069 Chenopodium quinoa HOM05D004814 ORTHO05D005778 1.3e-57 227.3 211 64.5
Nitab4.5_0003491g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 1.7e-57 226.9 207 60.9
Ah.06g181280 Amaranthus hybridus HOM05D004814 ORTHO05D005778 2.2e-57 226.5 207 64.7
SGA_v2.0_scaffold8G04398 Striga asiatica HOM05D004814 ORTHO05D005778 6.4e-57 224.9 209 63.6
Ah.04g166490 Amaranthus hybridus HOM05D004814 ORTHO05D005778 1.1e-56 224.2 208 63.5
Eucgr.F03697 Eucalyptus grandis HOM05D004814 ORTHO05D005778 1.1e-56 224.2 220 63.6
ECA240G4731 Erigeron canadensis HOM05D001580 ORTHO05D001517 1.4e-56 223.8 166 71.7
MSTRG.14478 Avicennia marina HOM05D004814 ORTHO05D005778 2.4e-56 223.0 209 64.1
A01p40680 Brassica napus HOM05D004814 ORTHO05D005778 1.6e-55 220.3 190 65.3
Peaxi162Scf00900g00010 Petunia axillaris HOM05D004814 ORTHO05D005778 1.6e-55 220.3 145 79.3
HanXRQChr03g0061321 Helianthus annuus HOM05D004814 ORTHO05D005778 4.6e-55 218.8 211 62.6
HanXRQChr13g0408121 Helianthus annuus HOM05D004814 ORTHO05D005778 6.0e-55 218.4 208 62.5
CSS0019029 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 2.3e-54 216.5 117 90.6
Zm00001eb401060 Zea mays HOM05D004814 ORTHO05D005778 2.3e-54 216.5 189 63.5
unitig_62.g23297 Utricularia gibba HOM05D004814 ORTHO05D005778 3.0e-54 216.1 207 61.8
Actinidia05024 Actinidia chinensis HOM05D004814 ORTHO05D005778 1.5e-53 213.8 209 60.3
Cpa.g.sc12.175 Carica papaya HOM05D004814 ORTHO05D005778 1.9e-53 213.4 104 99.0
Zm00001eb008100 Zea mays HOM05D004814 ORTHO05D005778 1.9e-53 213.4 201 61.2
CDE10G1086 Ceratophyllum demersum HOM05D004814 ORTHO05D005778 4.3e-53 212.2 111 91.9
HPP92_020399 Vanilla planifolia HOM05D004814 ORTHO05D005778 7.3e-53 211.5 190 61.6
Lj1P888T30 Lonicera japonica HOM05D004814 ORTHO05D005778 9.5e-53 211.1 104 98.1
VMungo0248G0001 Vigna mungo HOM05D004814 ORTHO05D005778 6.2e-52 208.4 104 95.2
ATR0624G087 Amborella trichopoda HOM05D004814 ORTHO05D005778 8.0e-52 208.0 104 96.2
Os03g0196800 Oryza sativa ssp. japonica HOM05D004814 ORTHO05D005778 5.2e-51 205.3 207 57.0
BraA01t04102Z Brassica rapa HOM05D004814 ORTHO05D005778 6.8e-51 204.9 104 94.2
C01p51960 Brassica napus HOM05D004814 ORTHO05D005778 8.9e-51 204.5 185 62.2
PSO832G2117 Papaver somniferum HOM05D004814 ORTHO05D005778 5.8e-50 201.8 209 56.9
QL05p065674 Quercus lobata HOM05D004814 ORTHO05D005778 3.7e-49 199.1 110 89.1
MBI19_g45743_MAGBIO Magnolia biondii HOM05D004814 ORTHO05D005778 1.0e-46 191.0 100 90.0
QL05p065593 Quercus lobata HOM05D004814 ORTHO05D005778 2.3e-46 189.9 103 91.3
AagrBONN_evm.TU.Sc2ySwM_117.1321 Anthoceros agrestis HOM05D004814 ORTHO05D005778 1.1e-43 181.0 124 71.0
Mapoly0009s0107 Marchantia polymorpha HOM05D004814 ORTHO05D005778 5.8e-42 175.3 100 81.0
Pp3c20_8830 Physcomitrium patens HOM05D004814 ORTHO05D005778 5.8e-42 175.3 125 69.6
Pp3c24_19230 Physcomitrium patens HOM05D004814 ORTHO05D005778 1.7e-41 173.7 102 80.4
Pp3c8_18990 Physcomitrium patens HOM05D004814 ORTHO05D005778 1.1e-40 171.0 111 72.1
SEGI_32296 Sequoiadendron giganteum HOM05D004814 ORTHO05D005778 2.5e-37 159.8 101 75.2
MSTRG.13015 Avicennia marina HOM05D004814 ORTHO05D005778 4.3e-37 159.1 162 56.8
CBR_g19640 Chara braunii HOM05D004814 ORTHO05D005778 6.2e-36 155.2 101 69.3
SMO228G0012 Selaginella moellendorffii HOM05D004814 ORTHO05D005778 1.9e-32 143.7 102 64.7
MCO07G521 Micromonas commoda HOM05D004814 ORTHO05D005778 1.3e-30 137.5 132 53.8
PRCOL_00000430 Prasinoderma coloniale HOM05D004814 ORTHO05D005778 1.2e-23 114.4 100 52.0
Cre03.g195650 Chlamydomonas reinhardtii HOM05D004814 ORTHO05D005778 1.3e-20 104.4 156 35.9
vmacro17432 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 5.3e-11 72.4 210 33.8
MBI19_g09202_MAGBIO Magnolia biondii HOM05D004814 ORTHO05D244005 5.1e-06 55.8 115 36.5
FAN07G0629 Fragaria x ananassa HOM05D001946 ORTHO05D002111 6.7e-06 55.5 123 30.9


User provided reference genes

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