Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024624.2 Cucumis melo HOM05D006226 ORTHO05D007738 0.0e+00 1407.9 696 100.0
ClCG06G008620 Citrullus lanatus HOM05D006226 ORTHO05D007738 0.0e+00 1226.8 708 87.4
Sed0016798 Sechium edule HOM05D006226 ORTHO05D007738 4.8e-312 1073.5 713 77.1
CsaV3_1G025440 Cucumis sativus L. HOM05D006226 ORTHO05D007738 8.6e-288 993.4 542 92.1
QL02p040023 Quercus lobata HOM05D006226 ORTHO05D007738 6.9e-237 824.3 713 60.4
CiPaw.03G218400 Carya illinoinensis HOM05D006226 ORTHO05D007738 9.7e-231 803.9 706 61.0
GSVIVG01015381001 Vitis vinifera HOM05D006226 ORTHO05D007738 2.9e-227 792.3 665 60.0
Prupe.7G232400 Prunus persica HOM05D006226 ORTHO05D007738 2.5e-226 789.3 709 57.8
Cfa003249 Carpinus fangiana HOM05D006226 ORTHO05D007738 6.1e-225 784.6 707 57.3
Ciclev10007624m.g Citrus clementina HOM05D006226 ORTHO05D007738 1.3e-222 776.9 684 58.5
FvH4_1g04570 Fragaria vesca HOM05D006226 ORTHO05D007738 2.4e-221 772.7 696 56.2
CANSAT56G2062 Cannabis sativa HOM05D006226 ORTHO05D007738 9.1e-221 770.8 711 56.4
RcHm_v2.0_Chr2g0090271 Rosa chinensis HOM05D006226 ORTHO05D007738 9.1e-221 770.8 699 57.4
FAN26G0472 Fragaria x ananassa HOM05D006226 ORTHO05D007738 1.6e-220 770.0 696 56.2
FAN19G1825 Fragaria x ananassa HOM05D006226 ORTHO05D007738 2.0e-220 769.6 696 56.0
FAN23G2910 Fragaria x ananassa HOM05D006226 ORTHO05D007738 1.2e-217 760.4 669 57.5
Lj2g0027193 Lotus japonicus HOM05D006226 ORTHO05D007738 1.2e-215 753.8 668 58.7
MD15G1183800 Malus domestica HOM05D006226 ORTHO05D007738 7.5e-215 751.1 712 54.4
Glyma.07G085400 Glycine max HOM05D006226 ORTHO05D007738 1.3e-214 750.4 716 56.6
Sabra18G0068600 Salix brachista HOM05D006226 ORTHO05D007738 1.3e-214 750.4 700 56.3
arahy.Tifrunner.gnm1.ann1.ZKYF3I Arachis hypogaea HOM05D006226 ORTHO05D007738 6.3e-214 748.0 665 58.5
Manes.16G114900 Manihot esculenta HOM05D006226 ORTHO05D007738 8.2e-214 747.7 669 58.6
Medtr6g087530 Medicago truncatula HOM05D006226 ORTHO05D007738 7.0e-213 744.6 663 57.6
arahy.Tifrunner.gnm1.ann1.9IQ1SY Arachis hypogaea HOM05D006226 ORTHO05D007738 1.2e-212 743.8 665 58.2
Psat1g043440 Pisum sativum HOM05D006226 ORTHO05D007738 1.2e-212 743.8 711 56.0
COL.COLO4_34848 Corchorus olitorius HOM05D006226 ORTHO05D007738 1.6e-212 743.4 657 57.4
Glyma.09G191500 Glycine max HOM05D006226 ORTHO05D007738 5.9e-212 741.5 716 56.4
TAR383G0867 Trochodendron aralioides HOM05D006226 ORTHO05D007738 1.3e-211 740.3 701 54.9
TPR.G10046 Trifolium pratense HOM05D006226 ORTHO05D007738 2.9e-211 739.2 651 58.1
Gorai.009G025300 Gossypium raimondii HOM05D006226 ORTHO05D007738 1.2e-209 733.8 715 55.1
Phvul.004G164600 Phaseolus vulgaris HOM05D006226 ORTHO05D007738 8.8e-208 727.6 647 58.4
Dinv36642 Davidia involucrata HOM05D006226 ORTHO05D007738 5.7e-207 724.9 615 59.7
Rhsim01G0096900 Rhododendron simsii HOM05D006226 ORTHO05D007738 9.8e-207 724.2 716 54.3
VMungo0464G1421 Vigna mungo HOM05D006226 ORTHO05D007738 2.7e-204 716.1 708 54.2
Potri.018G081500 Populus trichocarpa HOM05D006226 ORTHO05D007738 1.1e-202 710.7 710 53.5
Gohir.A05G023700 Gossypium hirsutum HOM05D006226 ORTHO05D007738 3.6e-201 705.7 714 53.2
Eucgr.C01033 Eucalyptus grandis HOM05D006226 ORTHO05D007738 4.0e-200 702.2 635 55.7
vmacro20706 Vaccinium macrocarpon HOM05D006226 ORTHO05D007738 1.3e-198 697.2 793 48.9
Lj7C652G7 Lonicera japonica HOM05D006226 ORTHO05D007738 1.2e-196 690.6 645 57.1
AL3G40100 Arabidopsis lyrata HOM05D006226 ORTHO05D007738 1.6e-196 690.3 626 57.0
Carub.0003s2495 Capsella rubella HOM05D006226 ORTHO05D007738 2.7e-196 689.5 700 52.3
Aqoxy7G03848 Aquilegia oxysepala HOM05D006226 ORTHO05D007738 1.3e-195 687.2 675 54.2
Cpa.g.sc23.97 Carica papaya HOM05D006226 ORTHO05D007738 3.8e-195 685.6 621 58.8
AT3G24560 Arabidopsis thaliana HOM05D006226 ORTHO05D007738 5.0e-195 685.3 653 55.3
PGR142G1694 Punica granatum HOM05D006226 ORTHO05D007738 9.5e-194 681.0 682 54.4
CARHR100790 Cardamine hirsuta HOM05D006226 ORTHO05D007738 6.1e-193 678.3 700 52.1
PSO210G0226 Papaver somniferum HOM05D006226 ORTHO05D007738 1.2e-191 674.1 677 53.0
PSO210G1415 Papaver somniferum HOM05D006226 ORTHO05D007738 5.8e-191 671.8 682 53.2
BcaC06g35722 Brassica carinata HOM05D006226 ORTHO05D007738 4.9e-190 668.7 666 53.8
BolC7t41639H Brassica oleracea HOM05D006226 ORTHO05D007738 4.9e-190 668.7 666 53.8
HanXRQChr12g0354991 Helianthus annuus HOM05D006226 ORTHO05D007738 6.4e-190 668.3 700 50.4
Nitab4.5_0004070g0080 Nicotiana tabacum HOM05D006226 ORTHO05D007738 1.1e-189 667.5 665 51.7
Thhalv10002431m.g Eutrema salsugineum HOM05D006226 ORTHO05D007738 9.2e-189 664.5 701 51.4
THA.LOC104808766 Tarenaya hassleriana HOM05D006226 ORTHO05D007738 1.6e-188 663.7 736 49.2
Sp3g22350 Schrenkiella parvula HOM05D006226 ORTHO05D007738 2.0e-188 663.3 651 52.8
Sopen11g026750 Solanum pennellii HOM05D006226 ORTHO05D007738 2.0e-188 663.3 716 50.4
PGSC0003DMG400026545 Solanum tuberosum HOM05D006226 ORTHO05D007738 1.7e-187 660.2 647 52.6
C07p11670 Brassica napus HOM05D006226 ORTHO05D007738 2.3e-187 659.8 667 53.2
BraA07t28567Z Brassica rapa HOM05D006226 ORTHO05D007738 5.6e-186 655.2 667 52.2
AUR62010999 Chenopodium quinoa HOM05D006226 ORTHO05D007738 5.6e-186 655.2 655 52.5
BcaB06g26659 Brassica carinata HOM05D006226 ORTHO05D007738 9.5e-186 654.4 702 50.9
FAN28G0796 Fragaria x ananassa HOM05D006226 ORTHO05D007738 1.6e-185 653.7 613 55.3
Sc16g0007880 Simmondsia chinensis HOM05D006226 ORTHO05D007738 2.1e-185 653.3 659 52.4
CAN.G644.14 Capsicum annuum HOM05D006226 ORTHO05D007738 2.8e-185 652.9 713 50.2
Actinidia32679 Actinidia chinensis HOM05D006226 ORTHO05D007738 8.0e-185 651.4 616 54.5
AUR62021510 Chenopodium quinoa HOM05D006226 ORTHO05D007738 2.0e-183 646.7 656 52.1
Cc06_g09770 Coffea canephora HOM05D006226 ORTHO05D007738 4.4e-183 645.6 729 50.3
A07p07760 Brassica napus HOM05D006226 ORTHO05D007738 4.9e-182 642.1 689 50.7
Nitab4.5_0006735g0020 Nicotiana tabacum HOM05D006226 ORTHO05D007738 8.6e-179 631.3 677 49.6
ECA233G1203 Erigeron canadensis HOM05D006226 ORTHO05D007738 2.8e-177 626.3 627 53.7
DCAR_002532 Daucus carota HOM05D006226 ORTHO05D007738 1.1e-176 624.4 642 51.9
SalBow6G3053 Salvia bowleyana HOM05D006226 ORTHO05D007738 2.6e-175 619.8 664 52.3
Migut.C00317 Erythranthe guttata HOM05D006226 ORTHO05D007738 4.6e-172 609.0 667 50.5
Lsat_1_v5_gn_8_3640 Lactuca sativa HOM05D006226 ORTHO05D007738 1.3e-171 607.4 697 49.9
Migut.G00900 Erythranthe guttata HOM05D006226 ORTHO05D007738 3.6e-169 599.4 641 50.9
Aa31sc29G50 Aethionema arabicum HOM05D006226 ORTHO05D007738 2.4e-168 596.7 710 46.9
Thecc.09G109000 Theobroma cacao HOM05D006226 ORTHO05D007738 2.2e-166 590.1 490 62.0
Migut.K01516 Erythranthe guttata HOM05D006226 ORTHO05D007738 3.3e-162 576.2 663 48.4
Atru.chr7.1363 Acer truncatum HOM05D006226 ORTHO05D007738 7.3e-162 575.1 478 61.3
SGA_v2.0_scaffold57G20229 Striga asiatica HOM05D006226 ORTHO05D007738 7.6e-159 565.1 687 46.0
Gohir.D05G025200 Gossypium hirsutum HOM05D006226 ORTHO05D007738 8.4e-158 561.6 530 56.2
Zm00001eb237720 Zea mays HOM05D006226 ORTHO05D007738 1.9e-157 560.5 659 46.3
CANSAT56G4481 Cannabis sativa HOM05D006226 ORTHO05D007738 5.1e-155 552.4 504 56.7
Hund09200 Selenicereus undatus HOM05D006226 ORTHO05D007738 1.9e-146 523.9 659 45.5
CSS0010508 Camellia sinensis var. sinensis HOM05D006226 ORTHO05D007738 8.4e-142 508.4 600 47.8
EL10Ac8g18501 Beta vulgaris HOM05D006226 ORTHO05D007738 1.9e-141 507.3 635 47.6
Ah.14g081980 Amaranthus hybridus HOM05D006226 ORTHO05D007738 3.7e-137 493.0 523 50.7
CSS0044649 Camellia sinensis var. sinensis HOM05D006226 ORTHO05D007738 3.1e-136 490.0 600 47.2
Nn8g39152 Nelumbo nucifera HOM05D006226 ORTHO05D007738 1.3e-131 474.6 359 66.3
Oeu002240.1 Olea europaea HOM05D006226 ORTHO05D007738 3.1e-128 463.4 490 50.2
MBI04_g22018_MAGBIO Magnolia biondii HOM05D006226 ORTHO05D007738 1.3e-126 458.0 379 59.4
Haze_25736 Corylus avellana HOM05D006226 ORTHO05D007738 3.8e-126 456.4 311 69.8
Lalb_Chr06g0174391 Lupinus albus HOM05D006226 ORTHO05D007738 2.9e-118 430.3 314 66.9
unitig_748.g7367 Utricularia gibba HOM05D006226 ORTHO05D007738 5.3e-112 409.5 647 39.3
Solyc11g067040.2 Solanum lycopersicum HOM05D006226 ORTHO05D007738 1.0e-102 378.6 344 57.6
ATR0315G013 Amborella trichopoda HOM05D006226 ORTHO05D007738 2.1e-100 370.9 306 61.1
AagrBONN_evm.TU.Sc2ySwM_368.2586 Anthoceros agrestis HOM05D006226 ORTHO05D007738 7.0e-96 355.9 649 36.1
Peaxi162Scf01284g00025 Petunia axillaris HOM05D006226 ORTHO05D007738 2.7e-95 354.0 334 55.7
Hma1.2p1_1463F.1_g285100 Hydrangea macrophylla HOM05D006226 ORTHO05D007738 1.0e-94 352.1 401 49.6
Mapoly0045s0077 Marchantia polymorpha HOM05D006226 ORTHO05D007738 4.0e-91 340.1 687 33.6
Peaxi162Scf01284g00019 Petunia axillaris HOM05D006226 ORTHO05D007738 4.1e-80 303.5 375 44.5
Solyc11g067030.2 Solanum lycopersicum HOM05D006226 ORTHO05D007738 1.3e-78 298.5 375 43.5
Lalb_Chr06g0174401 Lupinus albus HOM05D006226 ORTHO05D007738 8.0e-76 289.3 325 47.7
ECA234G2375 Erigeron canadensis HOM05D006226 ORTHO05D007738 5.2e-75 286.6 604 32.8
SMO170G0077 Selaginella moellendorffii HOM05D006226 ORTHO05D007738 3.4e-74 283.9 662 31.9
Pp3c5_3840 Physcomitrium patens HOM05D006226 ORTHO05D007738 5.2e-67 260.0 555 31.9
Hma1.2p1_1463F.1_g285110 Hydrangea macrophylla HOM05D006226 ORTHO05D007738 3.3e-61 240.7 308 46.8
MBI04_g29967_MAGBIO Magnolia biondii HOM05D006226 ORTHO05D007738 8.1e-60 236.1 407 39.1
CDE04G3650 Ceratophyllum demersum HOM05D001758 ORTHO05D005969 4.9e-49 200.3 196 50.5
CANSAT56G3567 Cannabis sativa HOM05D006226 ORTHO05D007738 8.7e-46 189.5 183 55.2
ATR0315G018 Amborella trichopoda HOM05D006226 ORTHO05D007738 2.4e-43 181.4 333 35.1
SGA_v2.0_scaffold88G27188 Striga asiatica HOM05D006226 ORTHO05D007738 1.1e-40 172.6 208 43.3
SGA_v2.0_scaffold3110G54276 Striga asiatica HOM05D006226 ORTHO05D007738 4.3e-37 160.6 132 57.6
Nitab4.5_0004070g0110 Nicotiana tabacum HOM05D006226 ORTHO05D007738 7.3e-37 159.8 257 36.6
CBR_g23439 Chara braunii HOM05D000019 ORTHO05D000002 3.1e-35 154.5 242 40.1
Os02g0266500 Oryza sativa ssp. japonica HOM05D006226 ORTHO05D007738 3.4e-34 151.0 123 58.5
Nitab4.5_0004070g0120 Nicotiana tabacum HOM05D006226 ORTHO05D007738 2.1e-28 131.7 188 41.0
SEGI_09304 Sequoiadendron giganteum HOM05D006226 ORTHO05D007738 5.8e-26 123.6 144 41.0
HanXRQChr00c0062g0571541 Helianthus annuus HOM05D006226 ORTHO05D007738 1.6e-23 115.5 163 41.1
Lsat_1_v5_gn_4_168221 Lactuca sativa HOM05D006226 ORTHO05D007738 1.1e-21 109.4 157 44.6
CDE04G0435 Ceratophyllum demersum HOM05D006226 ORTHO05D007738 1.1e-16 92.8 167 36.5
SEGI_25817 Sequoiadendron giganteum HOM05D006226 ORTHO05D007738 1.4e-16 92.4 78 53.8
Actinidia07412 Actinidia chinensis HOM05D006226 ORTHO05D007738 9.3e-16 89.7 54 74.1
HPP92_005262 Vanilla planifolia HOM05D006226 ORTHO05D007738 9.3e-16 89.7 77 59.7
HanXRQChr00c0062g0571551 Helianthus annuus HOM05D006226 ORTHO05D007738 6.7e-14 83.6 114 41.2
MCO09G126 Micromonas commoda HOM05D006226 ORTHO05D007738 2.8e-12 78.2 216 31.0
Pp3c24_3750 Physcomitrium patens HOM05D028917 ORTHO05D023487 2.2e-09 68.6 293 24.6
PRCOL_00000419 Prasinoderma coloniale HOM05D006226 ORTHO05D023487 3.8e-09 67.8 275 24.7
Medtr6g087540 Medicago truncatula HOM05D006226 ORTHO05D007738 2.1e-07 62.0 136 33.8
HPP92_005261 Vanilla planifolia HOM05D006226 ORTHO05D007738 2.7e-07 61.6 76 40.8
AagrBONN_evm.TU.Sc2ySwM_362.2567 Anthoceros agrestis HOM05D028917 ORTHO05D023487 4.6e-07 60.8 153 32.0


User provided reference genes

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