Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024481.2 Cucumis melo HOM05D006951 ORTHO05D008594 1.1e-71 273.1 130 100.0
CsaV3_6G040080 Cucumis sativus L. HOM05D006951 ORTHO05D008594 1.6e-70 269.2 130 97.7
ClCG04G009460 Citrullus lanatus HOM05D006951 ORTHO05D008594 6.7e-69 263.8 130 96.2
Sed0009232 Sechium edule HOM05D006951 ORTHO05D008594 4.7e-62 241.1 131 87.0
CANSAT80G0954 Cannabis sativa HOM05D006951 ORTHO05D008594 2.0e-60 235.7 125 85.6
Haze_20517 Corylus avellana HOM05D006951 ORTHO05D008594 1.3e-59 233.0 126 82.5
Sabra06G0096900 Salix brachista HOM05D006951 ORTHO05D008594 1.3e-59 233.0 127 81.1
Cfa017635 Carpinus fangiana HOM05D006951 ORTHO05D008594 1.7e-59 232.6 126 82.5
Potri.006G122700 Populus trichocarpa HOM05D006951 ORTHO05D008594 2.8e-59 231.9 127 81.1
CiPaw.09G171000 Carya illinoinensis HOM05D006951 ORTHO05D008594 1.1e-58 229.9 127 80.3
Medtr7g102310 Medicago truncatula HOM05D006951 ORTHO05D008594 1.6e-57 226.1 126 81.0
TWI74G0247 Tripterygium wilfordii HOM05D006951 ORTHO05D008594 1.6e-57 226.1 126 79.4
COL.COLO4_26935 Corchorus olitorius HOM05D006951 ORTHO05D008594 4.5e-57 224.6 133 76.7
Atru.chr8.1776 Acer truncatum HOM05D006951 ORTHO05D008594 1.0e-56 223.4 126 78.6
FAN05G0469 Fragaria x ananassa HOM05D006951 ORTHO05D008594 1.0e-56 223.4 127 81.1
FAN14G1959 Fragaria x ananassa HOM05D006951 ORTHO05D008594 1.0e-56 223.4 127 81.1
Ca_08913_v3 Cicer arietinum L. HOM05D006951 ORTHO05D008594 1.3e-56 223.0 125 80.0
Manes.16G055400 Manihot esculenta HOM05D006951 ORTHO05D008594 1.3e-56 223.0 126 79.4
FAN05G0824 Fragaria x ananassa HOM05D006951 ORTHO05D008594 1.7e-56 222.6 127 81.1
Glyma.19G185200 Glycine max HOM05D006951 ORTHO05D008594 2.9e-56 221.9 126 77.8
Eucgr.A01658 Eucalyptus grandis HOM05D006951 ORTHO05D008594 5.0e-56 221.1 126 77.0
VMungo1383G2370 Vigna mungo HOM05D006951 ORTHO05D008594 5.0e-56 221.1 126 77.8
Duzib106G1710 Durio zibethinus HOM05D006951 ORTHO05D008594 6.6e-56 220.7 126 77.8
FAN02G4365 Fragaria x ananassa HOM05D006951 ORTHO05D008594 6.6e-56 220.7 127 80.3
RcHm_v2.0_Chr3g0470511 Rosa chinensis HOM05D006951 ORTHO05D008594 6.6e-56 220.7 127 80.3
Thecc.05G069400 Theobroma cacao HOM05D006951 ORTHO05D008594 8.6e-56 220.3 126 78.6
GSVIVG01033661001 Vitis vinifera HOM05D006951 ORTHO05D008594 8.6e-56 220.3 126 80.2
Actinidia26657 Actinidia chinensis HOM05D006951 ORTHO05D008594 1.1e-55 219.9 126 77.0
Cpa.g.sc456.2 Carica papaya HOM05D006951 ORTHO05D008594 1.1e-55 219.9 128 78.9
FvH4_6g16580 Fragaria vesca HOM05D006951 ORTHO05D008594 1.1e-55 219.9 127 80.3
Psat3g041600 Pisum sativum HOM05D006951 ORTHO05D008594 1.9e-55 219.2 127 77.2
Lalb_Chr25g0288931 Lupinus albus HOM05D006951 ORTHO05D008594 3.3e-55 218.4 128 75.8
Gohir.D09G141300 Gossypium hirsutum HOM05D006951 ORTHO05D008594 4.2e-55 218.0 126 77.8
Gorai.006G162200 Gossypium raimondii HOM05D006951 ORTHO05D008594 4.2e-55 218.0 126 77.8
Phvul.001G180100 Phaseolus vulgaris HOM05D006951 ORTHO05D008594 9.5e-55 216.9 126 76.2
THA.LOC104816356 Tarenaya hassleriana HOM05D006951 ORTHO05D008594 1.2e-54 216.5 126 76.2
Cc06_g04390 Coffea canephora HOM05D006951 ORTHO05D008594 1.6e-54 216.1 126 76.2
Prupe.7G127500 Prunus persica HOM05D006951 ORTHO05D008594 1.6e-54 216.1 126 76.2
PGR004G1868 Punica granatum HOM05D006951 ORTHO05D008594 1.6e-54 216.1 127 77.2
Actinidia28914 Actinidia chinensis HOM05D006951 ORTHO05D008594 2.1e-54 215.7 126 75.4
Ciclev10013072m.g Citrus clementina HOM05D006951 ORTHO05D008594 2.8e-54 215.3 129 74.4
Gohir.A09G145200 Gossypium hirsutum HOM05D006951 ORTHO05D008594 4.7e-54 214.5 126 77.0
TAR369G1149 Trochodendron aralioides HOM05D006951 ORTHO05D008594 4.7e-54 214.5 126 75.4
vmacro07304 Vaccinium macrocarpon HOM05D006951 ORTHO05D008594 4.7e-54 214.5 126 75.4
Lj1g0019165 Lotus japonicus HOM05D006951 ORTHO05D008594 6.1e-54 214.2 127 77.2
Peaxi162Scf00282g00715 Petunia axillaris HOM05D006951 ORTHO05D008594 6.1e-54 214.2 126 77.0
AL6G12830 Arabidopsis lyrata HOM05D006951 ORTHO05D008594 8.0e-54 213.8 126 77.8
Carub.0006s0227 Capsella rubella HOM05D006951 ORTHO05D008594 8.0e-54 213.8 126 77.8
Dinv37325 Davidia involucrata HOM05D006951 ORTHO05D008594 1.4e-53 213.0 126 74.6
TAR633G0596 Trochodendron aralioides HOM05D006951 ORTHO05D008594 1.4e-53 213.0 126 73.8
PSO339G4731 Papaver somniferum HOM05D006951 ORTHO05D008594 1.8e-53 212.6 126 73.8
QL07p042869 Quercus lobata HOM05D006951 ORTHO05D008594 1.8e-53 212.6 162 64.8
Nn6g35256 Nelumbo nucifera HOM05D006951 ORTHO05D008594 2.3e-53 212.2 125 77.6
Aa31LG1G21700 Aethionema arabicum HOM05D006951 ORTHO05D008594 3.0e-53 211.8 126 76.2
arahy.Tifrunner.gnm1.ann1.GEWQ29 Arachis hypogaea HOM05D006951 ORTHO05D008594 3.0e-53 211.8 127 74.0
arahy.Tifrunner.gnm1.ann1.U3DP0D Arachis hypogaea HOM05D006951 ORTHO05D008594 3.0e-53 211.8 127 74.0
Nitab4.5_0024714g0010 Nicotiana tabacum HOM05D006951 ORTHO05D008594 4.0e-53 211.5 125 76.8
Solyc01g097140.4 Solanum lycopersicum HOM05D006951 ORTHO05D008594 4.0e-53 211.5 126 77.0
Sopen01g040820 Solanum pennellii HOM05D006951 ORTHO05D008594 4.0e-53 211.5 126 77.0
MD12G1109000 Malus domestica HOM05D006951 ORTHO05D008594 5.2e-53 211.1 126 74.6
PGSC0003DMG400027515 Solanum tuberosum HOM05D006951 ORTHO05D008594 5.2e-53 211.1 126 77.0
ECA233G5925 Erigeron canadensis HOM05D006951 ORTHO05D008594 6.8e-53 210.7 128 75.0
Sp6g39280 Schrenkiella parvula HOM05D006951 ORTHO05D008594 6.8e-53 210.7 126 74.6
Thhalv10014956m.g Eutrema salsugineum HOM05D006951 ORTHO05D008594 8.9e-53 210.3 126 75.4
PSO801G0767 Papaver somniferum HOM05D006951 ORTHO05D008594 1.2e-52 209.9 126 73.0
CARHR209870 Cardamine hirsuta HOM05D006951 ORTHO05D008594 1.5e-52 209.5 126 75.4
Nitab4.5_0002247g0030 Nicotiana tabacum HOM05D006951 ORTHO05D008594 2.0e-52 209.1 125 76.0
Hma1.2p1_0828F.1_g225170 Hydrangea macrophylla HOM05D006951 ORTHO05D008594 3.4e-52 208.4 127 76.4
AUR62042061 Chenopodium quinoa HOM05D006951 ORTHO05D008594 7.5e-52 207.2 126 73.0
BcaB01g05838 Brassica carinata HOM05D006951 ORTHO05D008594 9.8e-52 206.8 125 74.4
A03p01180 Brassica napus HOM05D006951 ORTHO05D008594 9.8e-52 206.8 125 74.4
C03p01520 Brassica napus HOM05D006951 ORTHO05D008594 9.8e-52 206.8 125 74.4
BolC3t12706H Brassica oleracea HOM05D006951 ORTHO05D008594 9.8e-52 206.8 125 74.4
BraA03t09500Z Brassica rapa HOM05D006951 ORTHO05D008594 9.8e-52 206.8 125 74.4
EL10Ac7g16659 Beta vulgaris HOM05D006951 ORTHO05D008594 1.3e-51 206.5 126 73.0
BcaB01g05820 Brassica carinata HOM05D006951 ORTHO05D008594 1.3e-51 206.5 125 74.4
SalBow5G4485 Salvia bowleyana HOM05D006951 ORTHO05D008594 1.3e-51 206.5 126 75.4
AUR62026921 Chenopodium quinoa HOM05D006951 ORTHO05D008594 1.7e-51 206.1 126 72.2
MBI07_g19430_MAGBIO Magnolia biondii HOM05D006951 ORTHO05D008594 2.2e-51 205.7 122 73.0
Aqoxy2G01713 Aquilegia oxysepala HOM05D006951 ORTHO05D008594 3.7e-51 204.9 126 73.0
CAN.G134.74 Capsicum annuum HOM05D006951 ORTHO05D008594 6.3e-51 204.1 126 73.8
SalBow5G4376 Salvia bowleyana HOM05D006951 ORTHO05D008594 1.4e-50 203.0 126 74.6
MSTRG.10329 Avicennia marina HOM05D006951 ORTHO05D008594 1.8e-50 202.6 126 72.2
Nitab4.5_0009274g0040 Nicotiana tabacum HOM05D006951 ORTHO05D008594 2.4e-50 202.2 119 77.3
HanXRQChr02g0051701 Helianthus annuus HOM05D006951 ORTHO05D008594 1.6e-49 199.5 130 71.5
DCAR_017669 Daucus carota HOM05D006951 ORTHO05D008594 2.0e-49 199.1 126 67.5
HanXRQChr13g0400861 Helianthus annuus HOM05D006951 ORTHO05D008594 2.9e-48 195.3 130 66.9
Migut.L01713 Erythranthe guttata HOM05D006951 ORTHO05D008594 1.5e-47 193.0 124 71.0
SGA_v2.0_scaffold35G14116 Striga asiatica HOM05D006951 ORTHO05D008594 1.9e-47 192.6 126 68.3
Sc20g0005620 Simmondsia chinensis HOM05D006951 ORTHO05D008594 3.6e-46 188.3 113 76.1
CDE08G0062 Ceratophyllum demersum HOM05D006951 ORTHO05D008594 4.7e-46 188.0 126 63.5
ATR0723G063 Amborella trichopoda HOM05D006951 ORTHO05D008594 4.4e-44 181.4 124 64.5
Lsat_1_v5_gn_6_24461 Lactuca sativa HOM05D006951 ORTHO05D008594 7.5e-44 180.6 113 74.3
Os03g0108000 Oryza sativa ssp. japonica HOM05D006951 ORTHO05D008594 8.3e-43 177.2 126 59.5
Zm00001eb394010 Zea mays HOM05D006951 ORTHO05D008594 3.2e-42 175.3 127 63.0
CDE02G4226 Ceratophyllum demersum HOM05D006951 ORTHO05D008594 4.1e-42 174.9 126 61.1
HPP92_025583 Vanilla planifolia HOM05D006951 ORTHO05D008594 5.0e-40 167.9 126 58.7
unitig_8.g4717 Utricularia gibba HOM05D006951 ORTHO05D008594 1.6e-38 162.9 115 64.3
SEGI_23238 Sequoiadendron giganteum HOM05D006951 ORTHO05D008594 6.8e-37 157.5 124 56.5
Pp3c1_27510 Physcomitrium patens HOM05D006951 ORTHO05D008594 1.2e-36 156.8 128 52.3
Dinv35800 Davidia involucrata HOM05D006951 ORTHO05D008594 9.8e-36 153.7 110 68.2
AagrBONN_evm.TU.Sc2ySwM_368.1351 Anthoceros agrestis HOM05D006951 ORTHO05D008594 2.3e-32 142.5 129 49.6
AagrBONN_evm.TU.Sc2ySwM_340.899 Anthoceros agrestis HOM05D006951 ORTHO05D008594 6.6e-32 141.0 129 49.6
Mapoly0029s0104 Marchantia polymorpha HOM05D006951 ORTHO05D008594 1.1e-31 140.2 125 53.6
SMO118G0389 Selaginella moellendorffii HOM05D006951 ORTHO05D008594 4.0e-29 131.7 123 52.0
TPR.G32820 Trifolium pratense HOM05D006951 ORTHO05D008594 6.8e-29 131.0 83 72.3
HPP92_025582 Vanilla planifolia HOM05D006951 ORTHO05D008594 1.5e-28 129.8 152 45.4
CSS0013835 Camellia sinensis var. sinensis HOM05D006951 ORTHO05D008594 4.4e-28 128.3 80 71.2
AT5G03455 Arabidopsis thaliana HOM05D006951 ORTHO05D008594 8.3e-27 124.0 75 80.0
PGR004G2181 Punica granatum HOM05D006951 ORTHO05D008594 4.0e-21 105.1 68 75.0
TPR.G15158 Trifolium pratense HOM05D006951 ORTHO05D008594 6.8e-21 104.4 53 84.9
CSS0008283 Camellia sinensis var. sinensis HOM05D006951 ORTHO05D008594 5.4e-18 94.7 52 73.1
Atru.chr8.1773 Acer truncatum HOM05D006951 ORTHO05D008594 1.2e-17 93.6 53 73.6
Os10g0545700 Oryza sativa ssp. japonica HOM05D006951 ORTHO05D008594 1.7e-16 89.7 53 67.9
BcaC06g32064 Brassica carinata HOM05D006951 ORTHO05D008594 5.1e-16 88.2 52 69.2
Hund14405 Selenicereus undatus HOM05D004066 ORTHO05D004434 4.3e-07 58.5 43 60.5
Haze_20905 Corylus avellana HOM05D006951 ORTHO05D008594 9.6e-07 57.4 36 72.2
Hund00749 Selenicereus undatus HOM05D004066 ORTHO05D004434 1.3e-06 57.0 43 58.1


User provided reference genes

Program Settings