Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024451.2 Cucumis melo HOM05D005732 ORTHO05D007062 6.3e-109 397.5 211 100.0
CsaV3_7G035420 Cucumis sativus L. HOM05D005732 ORTHO05D007062 2.4e-100 369.0 211 91.9
Sed0001710 Sechium edule HOM05D005732 ORTHO05D007062 3.9e-82 308.5 211 78.7
CiPaw.01G232900 Carya illinoinensis HOM05D005732 ORTHO05D007062 3.8e-61 238.8 212 61.8
Cfa003665 Carpinus fangiana HOM05D005732 ORTHO05D007062 8.4e-61 237.7 202 62.9
Haze_15828 Corylus avellana HOM05D005732 ORTHO05D007062 9.3e-60 234.2 206 62.1
Dinv37994 Davidia involucrata HOM05D005732 ORTHO05D007062 2.7e-59 232.6 207 60.4
Hma1.2p1_1689F.1_g297591 Hydrangea macrophylla HOM05D005732 ORTHO05D007062 1.8e-58 229.9 201 59.2
PGR102G2433 Punica granatum HOM05D005732 ORTHO05D007062 6.7e-58 228.0 210 60.0
arahy.Tifrunner.gnm1.ann1.U1FWF5 Arachis hypogaea HOM05D005732 ORTHO05D007062 9.6e-57 224.2 198 61.1
arahy.Tifrunner.gnm1.ann1.Z2G3LM Arachis hypogaea HOM05D005732 ORTHO05D007062 9.6e-57 224.2 198 61.1
Lj5A55G45 Lonicera japonica HOM05D005732 ORTHO05D007062 2.1e-56 223.0 207 59.9
Potri.003G050400 Populus trichocarpa HOM05D005732 ORTHO05D007062 4.8e-56 221.9 220 55.5
VMungo0331G0354 Vigna mungo HOM05D005732 ORTHO05D007062 6.2e-56 221.5 200 61.0
MD09G1205900 Malus domestica HOM05D005732 ORTHO05D007062 1.8e-55 219.9 170 65.3
Migut.I00910 Erythranthe guttata HOM05D005732 ORTHO05D007062 2.4e-55 219.5 214 56.1
Potri.001G188000 Populus trichocarpa HOM05D005732 ORTHO05D007062 5.3e-55 218.4 207 56.5
Phvul.010G146500 Phaseolus vulgaris HOM05D005732 ORTHO05D007062 6.9e-55 218.0 205 59.5
Glyma.07G017000 Glycine max HOM05D005732 ORTHO05D007062 1.2e-54 217.2 207 59.9
TAR383G0371 Trochodendron aralioides HOM05D005732 ORTHO05D007062 1.2e-54 217.2 206 55.8
Lj3g0008110 Lotus japonicus HOM05D005732 ORTHO05D007062 2.6e-54 216.1 172 64.5
FvH4_6g32160 Fragaria vesca HOM05D005732 ORTHO05D007062 5.8e-54 214.9 196 57.7
Sabra03G0028400 Salix brachista HOM05D005732 ORTHO05D007062 7.6e-54 214.5 220 55.9
Eucgr.F03064 Eucalyptus grandis HOM05D005732 ORTHO05D007062 1.3e-53 213.8 206 57.3
CSS0006657 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 1.7e-53 213.4 204 56.4
FAN02G4216 Fragaria x ananassa HOM05D005732 ORTHO05D007062 2.2e-53 213.0 170 62.9
FAN14G0018 Fragaria x ananassa HOM05D005732 ORTHO05D007062 2.9e-53 212.6 196 56.6
MSTRG.22648 Avicennia marina HOM05D005732 ORTHO05D007062 3.8e-53 212.2 206 56.8
Aqoxy7G01470 Aquilegia oxysepala HOM05D005732 ORTHO05D007062 4.9e-53 211.8 211 56.4
FAN05G5290 Fragaria x ananassa HOM05D005732 ORTHO05D007062 8.4e-53 211.1 170 62.9
CSS0032474 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 1.4e-52 210.3 209 57.4
MBI04_g40322_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 1.9e-52 209.9 211 51.2
RcHm_v2.0_Chr2g0140051 Rosa chinensis HOM05D005732 ORTHO05D007062 1.9e-52 209.9 170 62.4
Manes.11G035100 Manihot esculenta HOM05D005732 ORTHO05D007062 2.5e-52 209.5 211 56.9
CSS0002541 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 4.2e-52 208.8 209 56.9
Lalb_Chr04g0262901 Lupinus albus HOM05D005732 ORTHO05D007062 4.2e-52 208.8 207 56.5
Manes.04G132400 Manihot esculenta HOM05D005732 ORTHO05D007062 4.2e-52 208.8 208 55.8
TAR626G0582 Trochodendron aralioides HOM05D005732 ORTHO05D007062 4.2e-52 208.8 192 56.8
Actinidia09002 Actinidia chinensis HOM05D005732 ORTHO05D007062 7.1e-52 208.0 203 55.7
FAN09G2308 Fragaria x ananassa HOM05D005732 ORTHO05D007062 7.1e-52 208.0 170 62.4
Gohir.A02G118700 Gossypium hirsutum HOM05D005732 ORTHO05D007062 1.2e-51 207.2 200 54.5
Psat4g197440 Pisum sativum HOM05D005732 ORTHO05D007062 2.1e-51 206.5 172 61.6
Medtr8g013900 Medicago truncatula HOM05D005732 ORTHO05D007062 4.6e-51 205.3 200 57.0
TWI18G0404 Tripterygium wilfordii HOM05D005732 ORTHO05D007062 4.6e-51 205.3 169 62.1
Prupe.3G061300 Prunus persica HOM05D005732 ORTHO05D007062 7.9e-51 204.5 170 62.4
Lsat_1_v5_gn_4_99921 Lactuca sativa HOM05D005732 ORTHO05D007062 1.8e-50 203.4 214 51.4
Oeu050609.1 Olea europaea HOM05D005732 ORTHO05D007062 2.3e-50 203.0 190 55.3
Thecc.06G097400 Theobroma cacao HOM05D005732 ORTHO05D007062 3.0e-50 202.6 219 53.0
vmacro16985 Vaccinium macrocarpon HOM05D005732 ORTHO05D007062 3.0e-50 202.6 212 51.9
CANSAT56G1056 Cannabis sativa HOM05D005732 ORTHO05D007062 6.7e-50 201.4 170 62.9
Ciclev10026574m.g Citrus clementina HOM05D005732 ORTHO05D007062 6.7e-50 201.4 168 61.9
Duzib192G0605 Durio zibethinus HOM05D005732 ORTHO05D007062 6.7e-50 201.4 173 61.3
Gorai.003G063300 Gossypium raimondii HOM05D005732 ORTHO05D007062 6.7e-50 201.4 200 53.0
Cpa.g.c29422 Carica papaya HOM05D005732 ORTHO05D007062 8.7e-50 201.1 175 60.6
GSVIVG01017014001 Vitis vinifera HOM05D005732 ORTHO05D007062 1.9e-49 199.9 145 69.0
MSTRG.11037 Avicennia marina HOM05D005732 ORTHO05D007062 2.5e-49 199.5 210 53.8
CiPaw.02G147000 Carya illinoinensis HOM05D005732 ORTHO05D007062 3.3e-49 199.1 205 54.6
HanXRQChr09g0275891 Helianthus annuus HOM05D005732 ORTHO05D007062 4.3e-49 198.7 165 58.2
TWI75G0681 Tripterygium wilfordii HOM05D005732 ORTHO05D007062 5.7e-49 198.4 200 53.0
Nn2g11615 Nelumbo nucifera HOM05D005732 ORTHO05D007062 1.6e-48 196.8 206 52.9
Sc15g0001950 Simmondsia chinensis HOM05D005732 ORTHO05D007062 1.6e-48 196.8 160 61.9
EL10Ac9g22102 Beta vulgaris HOM05D005732 ORTHO05D007062 2.1e-48 196.4 196 55.6
Cc04_g02710 Coffea canephora HOM05D005732 ORTHO05D007062 2.1e-48 196.4 202 53.0
DCAR_026348 Daucus carota HOM05D005732 ORTHO05D007062 2.8e-48 196.1 164 60.4
QL05p020542 Quercus lobata HOM05D005732 ORTHO05D007062 2.8e-48 196.1 215 51.6
Sabra01G0152800 Salix brachista HOM05D005732 ORTHO05D007062 6.2e-48 194.9 221 50.7
PSO832G1217 Papaver somniferum HOM05D005732 ORTHO05D007062 1.1e-47 194.1 211 48.8
SalBow1G6954 Salvia bowleyana HOM05D005732 ORTHO05D007062 1.1e-47 194.1 167 58.7
AUR62031884 Chenopodium quinoa HOM05D005732 ORTHO05D007062 2.4e-47 193.0 202 53.5
SalBow2G2342 Salvia bowleyana HOM05D005732 ORTHO05D007062 4.1e-47 192.2 167 58.1
Hund06653 Selenicereus undatus HOM05D005732 ORTHO05D007062 4.1e-47 192.2 165 58.2
DCAR_016197 Daucus carota HOM05D005732 ORTHO05D007062 5.3e-47 191.8 205 50.2
ECA232G1272 Erigeron canadensis HOM05D000181 ORTHO05D008575 6.9e-47 191.4 195 52.3
AUR62022181 Chenopodium quinoa HOM05D005732 ORTHO05D007062 9.0e-47 191.0 211 51.7
Lsat_1_v5_gn_1_34600 Lactuca sativa HOM05D005732 ORTHO05D007062 9.0e-47 191.0 213 51.2
TPR.G35018 Trifolium pratense HOM05D005732 ORTHO05D007062 9.0e-47 191.0 178 57.9
HanXRQChr16g0501231 Helianthus annuus HOM05D005732 ORTHO05D007062 1.2e-46 190.7 166 56.0
COL.COLO4_30485 Corchorus olitorius HOM05D000181 ORTHO05D008575 1.5e-46 190.3 189 55.0
Solyc03g120870.3 Solanum lycopersicum HOM05D005732 ORTHO05D007062 5.8e-46 188.3 204 50.0
PSO173G0088 Papaver somniferum HOM05D005732 ORTHO05D007062 3.8e-45 185.7 199 49.2
Gohir.D03G059300 Gossypium hirsutum HOM05D005732 ORTHO05D007062 6.5e-45 184.9 200 50.0
Sopen03g039690 Solanum pennellii HOM05D005732 ORTHO05D007062 8.4e-45 184.5 204 49.5
ClCG09G000040 Citrullus lanatus HOM05D005732 ORTHO05D007062 1.9e-44 183.3 208 53.8
Lj9A511T51 Lonicera japonica HOM05D005732 ORTHO05D007062 2.5e-44 183.0 241 48.1
PGSC0003DMG400002535 Solanum tuberosum HOM05D005732 ORTHO05D007062 2.5e-44 183.0 167 55.1
ECA247G0174 Erigeron canadensis HOM05D005732 ORTHO05D007062 9.3e-44 181.0 212 46.2
Peaxi162Scf00038g00842 Petunia axillaris HOM05D005732 ORTHO05D007062 5.1e-42 175.3 210 48.6
HanXRQChr02g0032191 Helianthus annuus HOM05D005732 ORTHO05D007062 6.7e-42 174.9 210 47.1
Atru.chr1.3497 Acer truncatum HOM05D005732 ORTHO05D007062 6.3e-40 168.3 167 53.3
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 1.4e-39 167.2 199 45.7
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 1.4e-39 167.2 199 45.7
Os01g0725400 Oryza sativa ssp. japonica HOM05D005732 ORTHO05D007062 9.0e-39 164.5 167 51.5
Rhsim12G0202300 Rhododendron simsii HOM05D005732 ORTHO05D007062 2.0e-38 163.3 172 54.7
MBI19_g26309_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 2.6e-38 162.9 208 43.8
BcaC05g28895 Brassica carinata HOM05D005732 ORTHO05D007062 5.9e-38 161.8 170 49.4
Ca_23241_v3 Cicer arietinum L. HOM05D005732 ORTHO05D007062 5.9e-38 161.8 172 52.3
BcaB06g25723 Brassica carinata HOM05D005732 ORTHO05D007062 7.7e-38 161.4 168 49.4
Carub.0003s1605 Capsella rubella HOM05D005732 ORTHO05D007062 1.3e-37 160.6 168 48.8
BraA05t22147Z Brassica rapa HOM05D005732 ORTHO05D007062 3.8e-37 159.1 199 44.7
THA.LOC104813551 Tarenaya hassleriana HOM05D005732 ORTHO05D007062 3.8e-37 159.1 147 55.8
AT3G16300 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 6.5e-37 158.3 169 47.9
Sp3g14670 Schrenkiella parvula HOM05D005732 ORTHO05D007062 8.5e-37 157.9 174 47.1
THA.LOC104817966 Tarenaya hassleriana HOM05D005732 ORTHO05D007062 1.4e-36 157.1 168 48.2
Duzib160G0019 Durio zibethinus HOM05D005732 ORTHO05D007062 4.2e-36 155.6 130 62.3
Thhalv10021518m.g Eutrema salsugineum HOM05D005732 ORTHO05D007062 5.5e-36 155.2 176 44.9
AL3G29050 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 1.6e-35 153.7 169 45.6
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 3.6e-35 152.5 168 46.4
unitig_46.g18459 Utricularia gibba HOM05D005732 ORTHO05D007062 1.0e-34 151.0 159 50.9
CARHR091510 Cardamine hirsuta HOM05D005732 ORTHO05D007062 1.8e-34 150.2 167 44.9
BcaB04g18894 Brassica carinata HOM05D005732 ORTHO05D007062 2.3e-34 149.8 166 47.6
BolC3t17024H Brassica oleracea HOM05D005732 ORTHO05D007062 6.7e-34 148.3 174 45.4
BraA03t13125Z Brassica rapa HOM05D005732 ORTHO05D007062 8.8e-34 147.9 174 46.0
BcaC01g03830 Brassica carinata HOM05D005732 ORTHO05D007062 1.1e-33 147.5 174 44.8
BolC3t17097H Brassica oleracea HOM05D005732 ORTHO05D007062 1.1e-33 147.5 174 44.8
A03p39750 Brassica napus HOM05D005732 ORTHO05D007062 1.5e-33 147.1 174 46.0
Lj9C524T15 Lonicera japonica HOM05D005732 ORTHO05D007062 2.5e-33 146.4 208 46.2
AT1G79780 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 4.3e-33 145.6 165 47.3
C03p48190 Brassica napus HOM05D005732 ORTHO05D007062 4.3e-33 145.6 167 44.9
AL2G41770 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 2.8e-32 142.9 165 46.7
Prupe.3G065500 Prunus persica HOM05D005732 ORTHO05D007062 3.7e-32 142.5 117 65.8
Aa31LG4G50 Aethionema arabicum HOM05D005732 ORTHO05D007062 4.8e-32 142.1 178 46.1
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 8.2e-32 141.4 114 59.6
Carub.0002s2773 Capsella rubella HOM05D005732 ORTHO05D007062 2.4e-31 139.8 165 46.7
Thhalv10019180m.g Eutrema salsugineum HOM05D005732 ORTHO05D007062 5.3e-31 138.7 162 46.3
A07p26310 Brassica napus HOM05D005732 ORTHO05D007062 2.6e-30 136.3 162 45.1
BraA07t30275Z Brassica rapa HOM05D005732 ORTHO05D007062 2.6e-30 136.3 162 45.1
C06p28700 Brassica napus HOM05D005732 ORTHO05D007062 4.5e-30 135.6 169 43.8
BolC6t38039H Brassica oleracea HOM05D005732 ORTHO05D007062 5.9e-30 135.2 167 43.7
MBI04_g44953_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 2.2e-29 133.3 110 58.2
Sp5g35990 Schrenkiella parvula HOM05D005732 ORTHO05D007062 2.2e-29 133.3 167 43.1
vmacro17018 Vaccinium macrocarpon HOM05D005732 ORTHO05D007062 1.2e-22 110.9 152 43.4
Dinv30452 Davidia involucrata HOM05D005732 ORTHO05D007062 3.2e-20 102.8 113 51.3
CDE02G4152 Ceratophyllum demersum HOM05D005732 ORTHO05D007062 7.2e-20 101.7 197 33.5
ATR0705G122 Amborella trichopoda HOM05D005732 ORTHO05D007062 3.6e-19 99.4 142 44.4
ATR0705G087 Amborella trichopoda HOM05D005732 ORTHO05D007062 1.7e-16 90.5 64 67.2
CARHR074750 Cardamine hirsuta HOM05D005732 ORTHO05D007062 7.2e-12 75.1 64 56.2
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 4.0e-10 69.3 56 62.5
EL10Ac6g13375 Beta vulgaris HOM05D003184 ORTHO05D000394 1.7e-08 63.9 155 31.6
Sed0001505 Sechium edule HOM05D001151 ORTHO05D001504 4.8e-08 62.4 194 26.3
MD16G1174700 Malus domestica HOM05D001151 ORTHO05D001504 6.3e-08 62.0 164 28.7
ATR0736G165 Amborella trichopoda HOM05D000748 ORTHO05D000394 1.1e-07 61.2 167 32.3
PGR004G2765 Punica granatum HOM05D001151 ORTHO05D001504 1.1e-07 61.2 204 28.9
Sabra12G0076700 Salix brachista HOM05D003184 ORTHO05D000394 1.1e-07 61.2 160 32.5
Sc07g0003650 Simmondsia chinensis HOM05D003184 ORTHO05D000394 1.4e-07 60.8 145 32.4
Sc15g0002000 Simmondsia chinensis HOM05D005732 ORTHO05D007062 1.4e-07 60.8 61 49.2
ATR0582G135 Amborella trichopoda HOM05D000748 ORTHO05D000394 2.4e-07 60.1 146 28.1
EL10Ac3g06571 Beta vulgaris HOM05D001151 ORTHO05D001504 2.4e-07 60.1 181 27.6
CARHR232440 Cardamine hirsuta HOM05D003184 ORTHO05D000394 4.1e-07 59.3 163 30.1
Oeu026200.1 Olea europaea HOM05D001151 ORTHO05D001504 4.1e-07 59.3 208 27.4
Cpa.g.sc16.115 Carica papaya HOM05D001151 ORTHO05D001504 5.4e-07 58.9 164 29.9
Manes.15G016400 Manihot esculenta HOM05D001151 ORTHO05D001504 5.4e-07 58.9 169 27.8
FAN02G3218 Fragaria x ananassa HOM05D003184 ORTHO05D000394 7.0e-07 58.5 146 25.3
MD13G1173500 Malus domestica HOM05D001151 ORTHO05D001504 7.0e-07 58.5 164 27.4
FAN05G1263 Fragaria x ananassa HOM05D003184 ORTHO05D000394 9.1e-07 58.2 144 25.7
RcHm_v2.0_Chr2g0176261 Rosa chinensis HOM05D003184 ORTHO05D000394 9.1e-07 58.2 163 28.2
Pp3c7_10840 Physcomitrium patens HOM05D002464 ORTHO05D000394 2.0e-06 57.0 188 29.8
BcaB03g12455 Brassica carinata HOM05D003184 ORTHO05D000394 2.7e-06 56.6 150 30.7
CiPaw.04G002500 Carya illinoinensis HOM05D003184 ORTHO05D000394 2.7e-06 56.6 165 27.3
Sabra08G0157000 Salix brachista HOM05D001151 ORTHO05D001504 2.7e-06 56.6 183 29.5
Oeu021625.1 Olea europaea HOM05D001151 ORTHO05D001504 3.5e-06 56.2 218 28.0
Pp3c10_17030 Physcomitrium patens HOM05D000748 ORTHO05D000394 3.5e-06 56.2 169 32.5
BcaC06g32947 Brassica carinata HOM05D001151 ORTHO05D001504 4.5e-06 55.8 165 27.9
Potri.008G205000 Populus trichocarpa HOM05D001151 ORTHO05D001504 4.5e-06 55.8 152 31.6
A03p49200 Brassica napus HOM05D001151 ORTHO05D001504 7.7e-06 55.1 165 28.5
BraA03t14019Z Brassica rapa HOM05D001151 ORTHO05D001504 7.7e-06 55.1 165 28.5
Lj6A670T85 Lonicera japonica HOM05D001151 ORTHO05D001504 7.7e-06 55.1 167 29.3
PGR083G0980 Punica granatum HOM05D003184 ORTHO05D000394 7.7e-06 55.1 173 27.7
SalBow7G2481 Salvia bowleyana HOM05D000748 ORTHO05D000394 7.7e-06 55.1 143 29.4
SalBow8G4396 Salvia bowleyana HOM05D003185 ORTHO05D009915 7.7e-06 55.1 135 30.4


User provided reference genes

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