Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024255.2 Cucumis melo HOM05D006064 ORTHO05D007619 4.7e-83 311.2 165 100.0
CsaV3_7G033420 Cucumis sativus L. HOM05D006064 ORTHO05D007619 1.6e-78 296.2 165 95.2
ClCG09G001940 Citrullus lanatus HOM05D006064 ORTHO05D007619 4.1e-71 271.6 167 89.8
Sed0002776 Sechium edule HOM05D006064 ORTHO05D007619 1.3e-64 250.0 166 84.3
Cfa002095 Carpinus fangiana HOM05D006064 ORTHO05D007619 3.2e-55 218.8 154 76.6
Haze_16361 Corylus avellana HOM05D006064 ORTHO05D007619 6.0e-54 214.5 154 76.0
CANSAT56G1509 Cannabis sativa HOM05D006064 ORTHO05D007619 4.7e-51 204.9 161 68.9
Hma1.2p1_1195F.1_g265790 Hydrangea macrophylla HOM05D006064 ORTHO05D007619 4.4e-49 198.4 155 69.0
Hma1.2p1_3147F.1_g333156 Hydrangea macrophylla HOM05D006064 ORTHO05D007619 4.4e-49 198.4 155 69.0
Thecc.06G092400 Theobroma cacao HOM05D006064 ORTHO05D007619 4.4e-49 198.4 146 71.2
Gohir.D05G131300 Gossypium hirsutum HOM05D006064 ORTHO05D007619 9.8e-49 197.2 146 71.2
Gorai.009G135000 Gossypium raimondii HOM05D006064 ORTHO05D007619 9.8e-49 197.2 146 71.2
Gohir.A05G131800 Gossypium hirsutum HOM05D006064 ORTHO05D007619 2.2e-48 196.1 146 70.5
TAR383G1034 Trochodendron aralioides HOM05D006064 ORTHO05D007619 2.2e-48 196.1 159 68.6
Duzib235G0379 Durio zibethinus HOM05D006064 ORTHO05D007619 4.9e-48 194.9 146 69.9
Manes.04G130000 Manihot esculenta HOM05D006064 ORTHO05D007619 1.1e-47 193.7 149 71.1
CiPaw.02G148800 Carya illinoinensis HOM05D006064 ORTHO05D007619 1.4e-47 193.4 156 68.6
Potri.001G184000 Populus trichocarpa HOM05D006064 ORTHO05D007619 4.1e-47 191.8 157 68.2
QL05p021654 Quercus lobata HOM05D006064 ORTHO05D007619 4.1e-47 191.8 157 69.4
Duzib160G0510 Durio zibethinus HOM05D006064 ORTHO05D007619 7.1e-47 191.0 145 69.7
THA.LOC104800422 Tarenaya hassleriana HOM05D006064 ORTHO05D007619 3.5e-46 188.7 146 67.1
TAR626G0023 Trochodendron aralioides HOM05D006064 ORTHO05D007619 3.5e-46 188.7 154 68.2
Dinv38021 Davidia involucrata HOM05D006064 ORTHO05D007619 6.0e-46 188.0 162 65.4
GSVIVG01017072001 Vitis vinifera HOM05D006064 ORTHO05D007619 1.0e-45 187.2 152 67.1
Carub.0002s2765 Capsella rubella HOM05D006064 ORTHO05D007619 1.3e-45 186.8 144 70.8
Thhalv10019289m.g Eutrema salsugineum HOM05D006064 ORTHO05D007619 3.0e-45 185.7 148 67.6
CARHR074660 Cardamine hirsuta HOM05D006064 ORTHO05D007619 3.9e-45 185.3 143 68.5
PGR102G3343 Punica granatum HOM05D006064 ORTHO05D007619 6.6e-45 184.5 151 66.2
PGSC0003DMG400002547 Solanum tuberosum HOM05D006064 ORTHO05D007619 8.6e-45 184.1 148 67.6
CSS0016455 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 1.1e-44 183.7 155 67.1
AL2G41710 Arabidopsis lyrata HOM05D006064 ORTHO05D007619 1.5e-44 183.3 144 68.8
AT1G79850 Arabidopsis thaliana HOM05D006064 ORTHO05D007619 1.9e-44 183.0 144 68.8
Aqoxy7G01608 Aquilegia oxysepala HOM05D006064 ORTHO05D007619 3.3e-44 182.2 159 61.6
Solyc03g120630.4 Solanum lycopersicum HOM05D006064 ORTHO05D007619 3.3e-44 182.2 148 67.6
Aa31LG4G130 Aethionema arabicum HOM05D006064 ORTHO05D007619 4.3e-44 181.8 145 70.3
CSS0001890 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 7.3e-44 181.0 155 66.5
RcHm_v2.0_Chr2g0138941 Rosa chinensis HOM05D006064 ORTHO05D007619 7.3e-44 181.0 158 62.7
Sabra01G0155400 Salix brachista HOM05D006064 ORTHO05D007619 7.3e-44 181.0 153 66.0
Gorai.011G074400 Gossypium raimondii HOM05D006064 ORTHO05D007619 9.5e-44 180.6 145 67.6
Lalb_Chr22g0351371 Lupinus albus HOM05D006064 ORTHO05D007619 9.5e-44 180.6 153 64.1
Eucgr.F03039 Eucalyptus grandis HOM05D006064 ORTHO05D007619 1.6e-43 179.9 167 61.1
Gohir.D10G070100 Gossypium hirsutum HOM05D006064 ORTHO05D007619 1.6e-43 179.9 145 67.6
Cc04_g03040 Coffea canephora HOM05D006064 ORTHO05D007619 2.1e-43 179.5 156 65.4
Prupe.3G067300 Prunus persica HOM05D006064 ORTHO05D007619 2.1e-43 179.5 156 63.5
TWI12G0791 Tripterygium wilfordii HOM05D006064 ORTHO05D007619 1.1e-42 177.2 153 62.1
Thhalv10001197m.g Eutrema salsugineum HOM05D006064 ORTHO05D007619 1.8e-42 176.4 150 63.3
Cpa.g.sc98.5 Carica papaya HOM05D006064 ORTHO05D007619 3.1e-42 175.6 113 77.9
FAN14G0180 Fragaria x ananassa HOM05D006064 ORTHO05D007619 3.1e-42 175.6 158 63.3
FvH4_6g31770 Fragaria vesca HOM05D006064 ORTHO05D007619 4.0e-42 175.3 158 63.3
Lsat_1_v5_gn_5_130940 Lactuca sativa HOM05D006064 ORTHO05D007619 5.2e-42 174.9 152 63.2
C09p30110 Brassica napus HOM05D006064 ORTHO05D007619 2.6e-41 172.6 145 66.2
FAN02G0676 Fragaria x ananassa HOM05D006064 ORTHO05D007619 2.6e-41 172.6 158 62.7
BcaC04g21589 Brassica carinata HOM05D006064 ORTHO05D007619 3.4e-41 172.2 145 66.2
Ciclev10026679m.g Citrus clementina HOM05D006064 ORTHO05D007619 7.6e-41 171.0 150 64.0
BolC9t55875H Brassica oleracea HOM05D006064 ORTHO05D007619 9.9e-41 170.6 145 65.5
A09p23360 Brassica napus HOM05D006064 ORTHO05D007619 1.3e-40 170.2 145 65.5
BraA09t37937Z Brassica rapa HOM05D006064 ORTHO05D007619 1.3e-40 170.2 145 65.5
CDE04G2099 Ceratophyllum demersum HOM05D006064 ORTHO05D007619 1.3e-40 170.2 157 63.7
FAN09G1878 Fragaria x ananassa HOM05D006064 ORTHO05D007619 1.7e-40 169.9 158 62.0
BcaB07g30746 Brassica carinata HOM05D006064 ORTHO05D007619 2.9e-40 169.1 146 63.7
FAN05G4262 Fragaria x ananassa HOM05D006064 ORTHO05D007619 2.9e-40 169.1 162 61.1
MD17G1191100 Malus domestica HOM05D006064 ORTHO05D007619 2.9e-40 169.1 139 66.9
PSO566G0311 Papaver somniferum HOM05D006064 ORTHO05D007619 4.9e-40 168.3 153 62.7
HanXRQChr12g0360791 Helianthus annuus HOM05D006064 ORTHO05D007619 6.4e-40 167.9 152 63.2
Lj3g0008796 Lotus japonicus HOM05D006064 ORTHO05D007619 6.4e-40 167.9 150 60.7
Sp2g12850 Schrenkiella parvula HOM05D006064 ORTHO05D007619 6.4e-40 167.9 146 65.8
A09p23350 Brassica napus HOM05D006064 ORTHO05D007619 8.4e-40 167.5 145 63.4
BraA09t37936Z Brassica rapa HOM05D006064 ORTHO05D007619 1.1e-39 167.2 145 63.4
TWI75G0440 Tripterygium wilfordii HOM05D006064 ORTHO05D007619 1.1e-39 167.2 150 63.3
C09p30100 Brassica napus HOM05D006064 ORTHO05D007619 1.9e-39 166.4 144 63.2
PSO782G0135 Papaver somniferum HOM05D006064 ORTHO05D007619 1.9e-39 166.4 153 62.1
Ah.01g021630 Amaranthus hybridus HOM05D006064 ORTHO05D007619 2.4e-39 166.0 165 60.0
BcaC04g21590 Brassica carinata HOM05D006064 ORTHO05D007619 9.2e-39 164.1 144 62.5
BolC9t55874H Brassica oleracea HOM05D006064 ORTHO05D007619 9.2e-39 164.1 144 62.5
Ah.01g005550 Amaranthus hybridus HOM05D006064 ORTHO05D007619 1.2e-38 163.7 167 61.1
CAN.G438.28 Capsicum annuum HOM05D006064 ORTHO05D007619 1.2e-38 163.7 157 56.7
Migut.I00941 Erythranthe guttata HOM05D006064 ORTHO05D007619 3.5e-38 162.2 157 61.1
MBI09_g14014_MAGBIO Magnolia biondii HOM05D006064 ORTHO05D007619 6.0e-38 161.4 166 62.7
AUR62011660 Chenopodium quinoa HOM05D006064 ORTHO05D007619 1.0e-37 160.6 160 60.0
SGA_v2.0_scaffold69G23360 Striga asiatica HOM05D006064 ORTHO05D007619 1.0e-37 160.6 154 59.1
AUR62016483 Chenopodium quinoa HOM05D006064 ORTHO05D007619 1.3e-37 160.2 165 58.2
Medtr2g101770 Medicago truncatula HOM05D006064 ORTHO05D007619 1.3e-37 160.2 156 58.3
Oeu033507.1 Olea europaea HOM05D006064 ORTHO05D007619 3.0e-37 159.1 157 57.3
TPR.G37258 Trifolium pratense HOM05D006064 ORTHO05D007619 1.1e-36 157.1 157 57.3
arahy.Tifrunner.gnm1.ann1.MEX591 Arachis hypogaea HOM05D006064 ORTHO05D007619 1.5e-36 156.8 153 57.5
Glyma.13G357200 Glycine max HOM05D006064 ORTHO05D007619 1.5e-36 156.8 140 61.4
Ca_01132_v3 Cicer arietinum L. HOM05D006064 ORTHO05D007619 5.6e-36 154.8 158 56.3
Actinidia21680 Actinidia chinensis HOM05D006064 ORTHO05D007619 7.3e-36 154.5 152 60.5
Glyma.15G016400 Glycine max HOM05D006064 ORTHO05D007619 1.2e-35 153.7 142 59.2
Sc12g0009460 Simmondsia chinensis HOM05D006064 ORTHO05D007619 4.7e-35 151.8 157 58.0
MSTRG.11053 Avicennia marina HOM05D006064 ORTHO05D007619 8.1e-35 151.0 152 53.9
COL.COLO4_30435 Corchorus olitorius HOM05D006064 ORTHO05D007619 1.1e-34 150.6 102 73.5
SGA_v2.0_scaffold5G02555 Striga asiatica HOM05D006064 ORTHO05D007619 1.1e-34 150.6 156 59.0
EL10Ac9g22030 Beta vulgaris HOM05D006064 ORTHO05D007619 1.4e-34 150.2 102 74.5
DCAR_016211 Daucus carota HOM05D006064 ORTHO05D007619 1.4e-34 150.2 100 73.0
Lj5C58T14 Lonicera japonica HOM05D006064 ORTHO05D007619 3.1e-34 149.1 103 71.8
Gohir.A10G081300 Gossypium hirsutum HOM05D006064 ORTHO05D007619 5.2e-34 148.3 100 73.0
Nitab4.5_0007217g0010 Nicotiana tabacum HOM05D006064 ORTHO05D007619 2.6e-33 146.0 102 71.6
Phvul.005G168800 Phaseolus vulgaris HOM05D006064 ORTHO05D007619 5.8e-33 144.8 154 53.9
unitig_37.g12253 Utricularia gibba HOM05D000346 ORTHO05D000326 9.9e-33 144.1 155 55.5
Nn2g11694 Nelumbo nucifera HOM05D006064 ORTHO05D007619 1.7e-32 143.3 99 72.7
unitig_46.g18557 Utricularia gibba HOM05D006064 ORTHO05D007619 1.7e-32 143.3 157 57.3
ATR0693G299 Amborella trichopoda HOM05D006064 ORTHO05D007619 8.4e-32 141.0 161 55.3
SalBow2G0408 Salvia bowleyana HOM05D006064 ORTHO05D007619 8.4e-32 141.0 104 71.2
Nitab4.5_0001315g0190 Nicotiana tabacum HOM05D006064 ORTHO05D007619 1.4e-31 140.2 99 71.7
VMungo1080G0744 Vigna mungo HOM05D006064 ORTHO05D007619 2.4e-31 139.4 151 54.3
Rhsim08G0223400 Rhododendron simsii HOM05D006064 ORTHO05D007619 4.2e-31 138.7 104 68.3
CSS0048088 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 2.7e-30 136.0 100 70.0
Zm00001eb367450 Zea mays HOM05D006064 ORTHO05D007619 2.5e-28 129.4 132 57.6
vmacro18887 Vaccinium macrocarpon HOM05D006064 ORTHO05D007619 7.3e-28 127.9 97 67.0
SEGI_37104 Sequoiadendron giganteum HOM05D006064 ORTHO05D007619 6.2e-27 124.8 136 51.5
Os04g0691600 Oryza sativa ssp. japonica HOM05D006064 ORTHO05D007619 1.4e-26 123.6 129 55.8
AagrBONN_evm.TU.Sc2ySwM_344.4090 Anthoceros agrestis HOM05D006064 ORTHO05D007619 9.0e-26 120.9 159 46.5
CSS0034695 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 1.2e-25 120.6 100 66.0
Nn3g18074 Nelumbo nucifera HOM05D006064 ORTHO05D007619 1.5e-25 120.2 102 62.7
Zm00001eb434460 Zea mays HOM05D006064 ORTHO05D007619 2.6e-25 119.4 113 59.3
AagrBONN_evm.TU.Sc2ySwM_344.4095 Anthoceros agrestis HOM05D006064 ORTHO05D007619 4.5e-25 118.6 159 45.9
Pp3c1_12860 Physcomitrium patens HOM05D006064 ORTHO05D007619 2.1e-22 109.8 133 45.1
MD09G1209400 Malus domestica HOM05D006064 ORTHO05D007619 6.0e-22 108.2 88 67.0
Pp3c11_14630 Physcomitrium patens HOM05D006064 ORTHO05D007619 3.0e-21 105.9 130 49.2
Mapoly0027s0119 Marchantia polymorpha HOM05D006064 ORTHO05D007619 2.0e-17 93.2 99 49.5
Actinidia32730 Actinidia chinensis HOM05D006064 ORTHO05D007619 9.9e-17 90.9 100 52.0
CBR_g33913 Chara braunii HOM05D006064 ORTHO05D007619 9.9e-17 90.9 96 47.9
Peaxi162Scf00015g00005 Petunia axillaris HOM05D006064 ORTHO05D007619 3.2e-15 85.9 63 69.8
SMO358G0237 Selaginella moellendorffii HOM05D006064 ORTHO05D007619 9.3e-15 84.3 73 54.8
Actinidia13476 Actinidia chinensis HOM05D006064 ORTHO05D007619 1.9e-12 76.6 54 61.1
Haze_02816 Corylus avellana HOM05D002629 ORTHO05D003221 4.3e-12 75.5 50 68.0
SalBow1G4549 Salvia bowleyana HOM05D006064 ORTHO05D007619 2.8e-11 72.8 75 54.7
Actinidia35657 Actinidia chinensis HOM05D006064 ORTHO05D007619 3.4e-09 65.9 100 40.0
Cre02.g118950 Chlamydomonas reinhardtii HOM05D004588 ORTHO05D005365 3.4e-09 65.9 73 43.8
MCO03G166 Micromonas commoda HOM05D006064 ORTHO05D007619 6.5e-08 61.6 88 39.8
Atru.chr8.1086 Acer truncatum HOM05D004588 ORTHO05D005365 9.3e-07 57.8 74 39.2
AagrBONN_evm.TU.Sc2ySwM_362.494 Anthoceros agrestis HOM05D004588 ORTHO05D005365 1.2e-06 57.4 77 37.7
Mapoly0128s0026 Marchantia polymorpha HOM05D004588 ORTHO05D005365 1.6e-06 57.0 77 37.7
Migut.J00858 Erythranthe guttata HOM05D004588 ORTHO05D005365 2.1e-06 56.6 94 37.2
FAN04G2743 Fragaria x ananassa HOM05D004588 ORTHO05D005365 4.6e-06 55.5 77 36.4
FAN05G0480 Fragaria x ananassa HOM05D004588 ORTHO05D005365 4.6e-06 55.5 77 36.4
Ciclev10009986m.g Citrus clementina HOM05D004588 ORTHO05D005365 6.0e-06 55.1 74 39.2
CBR_g18728 Chara braunii HOM05D004588 ORTHO05D005365 7.9e-06 54.7 77 37.7


User provided reference genes

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