Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023667.2 Cucumis melo HOM05D006403 ORTHO05D008130 5.1e-199 697.6 361 100.0
ClCG09G010420 Citrullus lanatus HOM05D006403 ORTHO05D008130 1.3e-173 613.2 346 93.1
Sed0020052 Sechium edule HOM05D006403 ORTHO05D008130 1.7e-146 523.1 314 84.7
CsaV3_7G024130 Cucumis sativus L. HOM05D006403 ORTHO05D008130 5.4e-132 474.9 249 98.0
Ciclev10001887m.g Citrus clementina HOM05D006403 ORTHO05D008130 3.2e-116 422.5 298 75.8
COL.COLO4_36653 Corchorus olitorius HOM05D006403 ORTHO05D008130 2.6e-110 402.9 315 71.7
Potri.013G114500 Populus trichocarpa HOM05D006403 ORTHO05D008130 9.8e-110 401.0 331 67.1
Gorai.013G140800 Gossypium raimondii HOM05D006403 ORTHO05D008130 6.4e-109 398.3 335 66.6
Gohir.D13G125700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 1.1e-108 397.5 335 66.6
TWI32G0485 Tripterygium wilfordii HOM05D006403 ORTHO05D008130 1.9e-108 396.7 329 66.3
Atru.chr13.1807 Acer truncatum HOM05D006403 ORTHO05D008130 7.0e-108 394.8 324 66.7
Atru.chr13.1815 Acer truncatum HOM05D006403 ORTHO05D008130 7.0e-108 394.8 324 66.7
Gohir.A13G121700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 1.2e-107 394.0 335 66.9
Thecc.08G202600 Theobroma cacao HOM05D006403 ORTHO05D008130 1.1e-105 387.5 336 67.0
Duzib177G0036 Durio zibethinus HOM05D006403 ORTHO05D008130 1.5e-105 387.1 312 70.2
Lalb_Chr19g0129801 Lupinus albus HOM05D006403 ORTHO05D008130 8.1e-104 381.3 306 67.0
CANSAT78G0580 Cannabis sativa HOM05D006403 ORTHO05D008130 1.1e-103 380.9 230 84.8
GSVIVG01034503001 Vitis vinifera HOM05D006403 ORTHO05D008130 4.4e-102 375.6 328 64.9
CSS0028864 Camellia sinensis var. sinensis HOM05D006403 ORTHO05D008130 4.9e-101 372.1 218 88.1
Haze_17907 Corylus avellana HOM05D006403 ORTHO05D008130 4.9e-101 372.1 233 82.4
Dinv41688 Davidia involucrata HOM05D006403 ORTHO05D008130 8.3e-101 371.3 334 65.0
Cfa018202 Carpinus fangiana HOM05D006403 ORTHO05D008130 2.4e-100 369.8 233 82.4
Nn8g40759 Nelumbo nucifera HOM05D006403 ORTHO05D008130 2.1e-99 366.7 229 82.1
QL02p034075 Quercus lobata HOM05D006403 ORTHO05D008130 2.7e-99 366.3 233 80.7
CiPaw.16G062500 Carya illinoinensis HOM05D006403 ORTHO05D008130 3.5e-99 365.9 222 84.7
Oeu017876.2 Olea europaea HOM05D006403 ORTHO05D008130 1.3e-98 364.0 250 76.8
PGR042G3834 Punica granatum HOM05D006403 ORTHO05D008130 1.3e-98 364.0 308 67.9
Lalb_Chr01g0010051 Lupinus albus HOM05D006403 ORTHO05D008130 2.3e-98 363.2 268 71.6
ECA233G3842 Erigeron canadensis HOM05D006403 ORTHO05D008130 3.9e-98 362.5 219 83.6
HanXRQChr02g0040151 Helianthus annuus HOM05D006403 ORTHO05D008130 5.1e-98 362.1 227 83.3
arahy.Tifrunner.gnm1.ann1.RC57KJ Arachis hypogaea HOM05D006403 ORTHO05D008130 1.1e-97 360.9 276 70.3
Rhsim08G0049700 Rhododendron simsii HOM05D006403 ORTHO05D008130 1.1e-97 360.9 222 83.8
Sc23g0004870 Simmondsia chinensis HOM05D006403 ORTHO05D008130 1.5e-97 360.5 257 74.7
AUR62013765 Chenopodium quinoa HOM05D006403 ORTHO05D008130 1.9e-97 360.1 226 81.4
Cc00_g04840 Coffea canephora HOM05D006403 ORTHO05D008130 3.3e-97 359.4 220 80.9
Nitab4.5_0000159g0220 Nicotiana tabacum HOM05D006403 ORTHO05D008130 4.3e-97 359.0 223 81.2
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 4.3e-97 359.0 262 72.5
Sabra13G0096800 Salix brachista HOM05D005981 ORTHO05D008130 7.3e-97 358.2 402 54.0
Hund27413 Selenicereus undatus HOM05D006403 ORTHO05D008130 7.3e-97 358.2 220 84.5
Manes.18G099900 Manihot esculenta HOM05D006403 ORTHO05D008130 1.2e-96 357.5 254 76.0
MSTRG.25437 Avicennia marina HOM05D006403 ORTHO05D008130 1.6e-96 357.1 239 77.8
Eucgr.F02626 Eucalyptus grandis HOM05D006403 ORTHO05D008130 2.8e-96 356.3 327 63.6
AUR62023390 Chenopodium quinoa HOM05D006403 ORTHO05D008130 3.6e-96 355.9 229 78.6
PSO732G0029 Papaver somniferum HOM05D006403 ORTHO05D008130 8.1e-96 354.8 209 84.2
SGA_v2.0_scaffold24G10549 Striga asiatica HOM05D006403 ORTHO05D008130 8.1e-96 354.8 227 80.6
RcHm_v2.0_Chr3g0495761 Rosa chinensis HOM05D006403 ORTHO05D008130 1.4e-95 354.0 221 81.4
Solyc11g017200.2 Solanum lycopersicum HOM05D006403 ORTHO05D008130 1.8e-95 353.6 222 81.1
Sopen11g009110 Solanum pennellii HOM05D006403 ORTHO05D008130 1.8e-95 353.6 222 81.1
Peaxi162Scf00495g00011 Petunia axillaris HOM05D006403 ORTHO05D008130 2.3e-95 353.2 223 80.7
EL10Ac1g00740 Beta vulgaris HOM05D006403 ORTHO05D008130 4.0e-95 352.4 219 81.3
Aqoxy7G00855 Aquilegia oxysepala HOM05D006403 ORTHO05D008130 6.8e-95 351.7 218 82.6
Duzib116G0580 Durio zibethinus HOM05D006403 ORTHO05D008130 6.8e-95 351.7 237 79.3
Potri.019G085200 Populus trichocarpa HOM05D006403 ORTHO05D008130 8.9e-95 351.3 246 75.6
CAN.G61.29 Capsicum annuum HOM05D006403 ORTHO05D008130 1.2e-94 350.9 222 80.2
PSO675G8117 Papaver somniferum HOM05D006403 ORTHO05D008130 1.2e-94 350.9 209 83.3
FvH4_1g29740 Fragaria vesca HOM05D006403 ORTHO05D008130 1.5e-94 350.5 221 80.5
FAN19G1279 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.5e-94 350.5 221 80.5
Hma1.2p1_0072F.1_g038220 Hydrangea macrophylla HOM05D006403 ORTHO05D008130 2.0e-94 350.1 232 79.3
Lsat_1_v5_gn_1_12940 Lactuca sativa HOM05D006403 ORTHO05D008130 2.6e-94 349.7 252 74.6
PGSC0003DMG400009235 Solanum tuberosum HOM05D006403 ORTHO05D008130 2.6e-94 349.7 222 80.2
arahy.Tifrunner.gnm1.ann1.3A12IQ Arachis hypogaea HOM05D006403 ORTHO05D008130 5.8e-94 348.6 267 70.0
C05p21830 Brassica napus HOM05D006403 ORTHO05D008130 7.6e-94 348.2 253 77.1
FAN28G0939 Fragaria x ananassa HOM05D006403 ORTHO05D008130 7.6e-94 348.2 221 80.1
FAN26G2688 Fragaria x ananassa HOM05D006403 ORTHO05D008130 9.9e-94 347.8 221 80.1
Actinidia29416 Actinidia chinensis HOM05D006403 ORTHO05D008130 1.3e-93 347.4 215 82.8
BolC5t30876H Brassica oleracea HOM05D006403 ORTHO05D008130 1.3e-93 347.4 253 76.7
Lj5g0000123 Lotus japonicus HOM05D006403 ORTHO05D008130 1.3e-93 347.4 252 71.4
FAN23G0108 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.7e-93 347.1 220 80.0
Prupe.7G018000 Prunus persica HOM05D006403 ORTHO05D008130 1.7e-93 347.1 220 80.5
A09p42040 Brassica napus HOM05D006403 ORTHO05D008130 2.2e-93 346.7 253 76.7
MD12G1013600 Malus domestica HOM05D006403 ORTHO05D008130 2.9e-93 346.3 265 69.1
Medtr1g096230 Medicago truncatula HOM05D006403 ORTHO05D008130 2.9e-93 346.3 333 59.2
BraA09t39690Z Brassica rapa HOM05D006403 ORTHO05D008130 4.9e-93 345.5 253 76.7
Phvul.007G090400 Phaseolus vulgaris HOM05D006403 ORTHO05D008130 6.4e-93 345.1 284 66.5
Sp1g20210 Schrenkiella parvula HOM05D006403 ORTHO05D008130 1.1e-92 344.4 231 80.5
MD14G1011000 Malus domestica HOM05D006403 ORTHO05D008130 1.4e-92 344.0 265 69.4
SalBow7G4031 Salvia bowleyana HOM05D006403 ORTHO05D008130 1.4e-92 344.0 221 80.1
THA.LOC104800111 Tarenaya hassleriana HOM05D006403 ORTHO05D008130 1.4e-92 344.0 318 65.1
Psat6g186640 Pisum sativum HOM05D006403 ORTHO05D008130 1.9e-92 343.6 255 69.8
AL1G36240 Arabidopsis lyrata HOM05D006403 ORTHO05D008130 3.2e-92 342.8 229 80.8
A07p14250 Brassica napus HOM05D006403 ORTHO05D008130 3.2e-92 342.8 289 67.1
BraA07t29182Z Brassica rapa HOM05D006403 ORTHO05D008130 5.4e-92 342.0 314 63.1
AT1G22700 Arabidopsis thaliana HOM05D006403 ORTHO05D008130 7.1e-92 341.7 229 80.8
BcaB03g14190 Brassica carinata HOM05D006403 ORTHO05D008130 1.2e-91 340.9 227 79.3
Aa31LG7G6600 Aethionema arabicum HOM05D006403 ORTHO05D008130 2.7e-91 339.7 261 71.6
ATR1127G194 Amborella trichopoda HOM05D006403 ORTHO05D008130 2.7e-91 339.7 220 77.3
Ca_10605_v3 Cicer arietinum L. HOM05D006403 ORTHO05D008130 2.7e-91 339.7 258 68.6
Lj7A297T43 Lonicera japonica HOM05D006403 ORTHO05D008130 6.0e-91 338.6 231 76.2
Oeu000555.1 Olea europaea HOM05D006403 ORTHO05D008130 6.0e-91 338.6 262 71.4
CARHR023070 Cardamine hirsuta HOM05D006403 ORTHO05D008130 7.8e-91 338.2 231 78.8
Thhalv10008318m.g Eutrema salsugineum HOM05D006403 ORTHO05D008130 1.7e-90 337.0 206 85.0
Glyma.20G176400 Glycine max HOM05D006403 ORTHO05D008130 1.7e-90 337.0 271 67.2
Carub.0001s2222 Capsella rubella HOM05D006403 ORTHO05D008130 3.0e-90 336.3 206 85.0
C07p20970 Brassica napus HOM05D006403 ORTHO05D008130 5.1e-90 335.5 223 79.8
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 6.6e-90 335.1 287 64.8
Glyma.10G215300 Glycine max HOM05D006403 ORTHO05D008130 1.5e-89 334.0 267 67.0
MBI17_g12885_MAGBIO Magnolia biondii HOM05D006403 ORTHO05D008130 1.5e-89 334.0 290 62.8
Migut.C01242 Erythranthe guttata HOM05D006403 ORTHO05D008130 5.6e-89 332.0 263 66.2
HPP92_025360 Vanilla planifolia HOM05D006403 ORTHO05D008130 6.2e-88 328.6 251 68.9
BolC7t42628H Brassica oleracea HOM05D006403 ORTHO05D008130 3.4e-86 322.8 319 61.4
CDE07G1616 Ceratophyllum demersum HOM05D006403 ORTHO05D008130 1.7e-85 320.5 188 85.1
BcaC06g34984 Brassica carinata HOM05D006403 ORTHO05D008130 2.2e-85 320.1 204 81.9
vmacro18286 Vaccinium macrocarpon HOM05D006403 ORTHO05D008130 4.9e-85 318.9 305 60.3
Cpa.g.sc66.55 Carica papaya HOM05D006403 ORTHO05D008130 1.4e-79 300.8 165 90.9
SEGI_04324 Sequoiadendron giganteum HOM05D006403 ORTHO05D008130 4.9e-77 292.4 226 65.5
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 3.2e-76 289.7 210 73.3
unitig_747.g21467 Utricularia gibba HOM05D006403 ORTHO05D008130 7.1e-76 288.5 227 68.7
Zm00001eb320270 Zea mays HOM05D006403 ORTHO05D008130 1.3e-74 284.3 210 71.4
BcaB03g14188 Brassica carinata HOM05D006403 ORTHO05D008130 3.4e-70 269.6 316 55.1
AagrBONN_evm.TU.Sc2ySwM_362.2277 Anthoceros agrestis HOM05D006403 ORTHO05D008130 3.9e-66 256.1 227 58.1
Pp3c2_18600 Physcomitrium patens HOM05D006403 ORTHO05D008130 1.8e-63 247.3 185 64.9
TPR.G1762 Trifolium pratense HOM05D006403 ORTHO05D008130 1.2e-62 244.6 142 83.8
Pp3c1_20680 Physcomitrium patens HOM05D006403 ORTHO05D008130 5.3e-55 219.2 165 64.8
Mapoly0015s0041 Marchantia polymorpha HOM05D006403 ORTHO05D008130 1.4e-52 211.1 183 57.4
CBR_g38402 Chara braunii HOM05D006403 ORTHO05D008130 3.2e-52 209.9 256 47.3
SMO118G0451 Selaginella moellendorffii HOM05D006403 ORTHO05D008130 6.7e-50 202.2 181 54.1
MCO16G319 Micromonas commoda HOM05D006403 ORTHO05D008130 9.1e-47 191.8 177 52.5
Cre12.g524300 Chlamydomonas reinhardtii HOM05D006403 ORTHO05D008130 4.5e-46 189.5 206 48.5
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 5.5e-44 182.6 117 82.1
RcHm_v2.0_Chr7g0219671 Rosa chinensis HOM05D006403 ORTHO05D008130 4.1e-39 166.4 143 63.6
RcHm_v2.0_Chr2g0092511 Rosa chinensis HOM05D006403 ORTHO05D008130 8.8e-34 148.7 158 55.7
PRCOL_00002033 Prasinoderma coloniale HOM05D006403 ORTHO05D008130 5.2e-26 122.9 143 40.6
RcHm_v2.0_Chr7g0199541 Rosa chinensis HOM05D006403 ORTHO05D008130 3.5e-22 110.2 65 84.6
Hma1.2p1_0072F.1_g038240 Hydrangea macrophylla HOM05D006403 ORTHO05D228046 1.3e-21 108.2 89 71.9
TPR.G20530 Trifolium pratense HOM05D006403 ORTHO05D008130 1.2e-19 101.7 94 57.4
Os08g0347500 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 1.3e-16 91.7 53 84.9


User provided reference genes

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