Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023585.2 Cucumis melo HOM05D002214 ORTHO05D007367 7.5e-211 736.9 360 100.0
CsaV3_7G030710 Cucumis sativus L. HOM05D002214 ORTHO05D007367 2.3e-167 592.4 436 73.2
Sed0008197 Sechium edule HOM05D002214 ORTHO05D007367 5.1e-143 511.5 436 64.7
ClCG09G004430 Citrullus lanatus HOM05D002214 ORTHO05D007367 4.2e-121 438.7 365 67.1
CiPaw.14G003400 Carya illinoinensis HOM05D002214 ORTHO05D007367 4.7e-96 355.5 434 45.9
QL04p010195 Quercus lobata HOM05D002214 ORTHO05D007367 3.9e-90 335.9 426 44.8
TWI09G0406 Tripterygium wilfordii HOM05D002214 ORTHO05D007367 3.6e-88 329.3 423 44.9
Cfa010812 Carpinus fangiana HOM05D002214 ORTHO05D007367 6.2e-88 328.6 436 43.1
RcHm_v2.0_Chr1g0318361 Rosa chinensis HOM05D002214 ORTHO05D007367 1.8e-87 327.0 436 44.5
GSVIVG01032215001 Vitis vinifera HOM05D002214 ORTHO05D007367 5.2e-87 325.5 426 43.7
FAN03G2729 Fragaria x ananassa HOM05D002214 ORTHO05D007367 6.8e-87 325.1 439 44.2
FAN10G2270 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.5e-86 323.9 437 44.4
Thecc.01G406200 Theobroma cacao HOM05D002214 ORTHO05D007367 7.6e-86 321.6 432 43.1
Manes.07G010800 Manihot esculenta HOM05D002214 ORTHO05D007367 2.2e-85 320.1 436 44.5
Rhsim07G0058900 Rhododendron simsii HOM05D002214 ORTHO05D007367 2.9e-85 319.7 423 43.7
CANSAT80G0536 Cannabis sativa HOM05D002214 ORTHO05D007367 6.4e-85 318.5 398 46.0
Ciclev10031605m.g Citrus clementina HOM05D002214 ORTHO05D007367 7.1e-84 315.1 423 44.9
Duzib138G1340 Durio zibethinus HOM05D002214 ORTHO05D007367 7.1e-84 315.1 421 44.2
Actinidia19424 Actinidia chinensis HOM05D002214 ORTHO05D007367 1.6e-83 313.9 426 41.5
MD07G1023200 Malus domestica HOM05D002214 ORTHO05D007367 1.6e-83 313.9 422 44.1
Gohir.A08G142300 Gossypium hirsutum HOM05D002214 ORTHO05D007367 4.6e-83 312.4 427 41.7
Gorai.004G170100 Gossypium raimondii HOM05D002214 ORTHO05D007367 6.0e-83 312.0 426 41.5
Medtr3g034210 Medicago truncatula HOM05D002214 ORTHO05D007367 1.3e-82 310.8 427 41.9
Potri.009G056500 Populus trichocarpa HOM05D002214 ORTHO05D007367 3.9e-82 309.3 432 42.4
Hma1.2p1_0685F.1_g203260 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 1.9e-81 307.0 432 40.7
CAN.G909.6 Capsicum annuum HOM05D002214 ORTHO05D007367 2.1e-80 303.5 429 42.7
QL04p010150 Quercus lobata HOM05D002214 ORTHO05D007367 2.8e-80 303.1 341 48.4
Psat5g212440 Pisum sativum HOM05D002214 ORTHO05D007367 3.6e-80 302.8 431 41.8
arahy.Tifrunner.gnm1.ann1.IP56PK Arachis hypogaea HOM05D002214 ORTHO05D007367 4.7e-80 302.4 423 43.0
Sopen01g034840 Solanum pennellii HOM05D002214 ORTHO05D007367 6.2e-80 302.0 435 41.8
Sc11g0009040 Simmondsia chinensis HOM05D002214 ORTHO05D007367 1.8e-79 300.4 429 42.4
Aqoxy2G00221 Aquilegia oxysepala HOM05D002214 ORTHO05D007367 3.1e-79 299.7 424 41.0
Solyc01g087910.4 Solanum lycopersicum HOM05D002214 ORTHO05D007367 4.0e-79 299.3 436 41.7
arahy.Tifrunner.gnm1.ann1.KRTV89 Arachis hypogaea HOM05D002214 ORTHO05D007367 6.8e-79 298.5 425 43.1
Prupe.2G024000 Prunus persica HOM05D002214 ORTHO05D007367 6.8e-79 298.5 426 42.5
Ca_24837_v3 Cicer arietinum L. HOM05D002214 ORTHO05D007367 1.2e-78 297.7 430 40.7
VMungo1217G0001 Vigna mungo HOM05D002214 ORTHO05D007367 2.0e-78 297.0 427 42.6
Lalb_Chr25g0282551 Lupinus albus HOM05D002214 ORTHO05D007367 5.8e-78 295.4 432 42.4
vmacro13697 Vaccinium macrocarpon HOM05D002214 ORTHO05D007367 9.9e-78 294.7 483 37.9
Phvul.005G035100 Phaseolus vulgaris HOM05D002214 ORTHO05D007367 1.3e-77 294.3 426 41.5
Glyma.11G159230 Glycine max HOM05D002214 ORTHO05D007367 6.4e-77 292.0 402 43.0
Lj3g0007976 Lotus japonicus HOM05D002214 ORTHO05D007367 3.2e-76 289.7 435 40.7
Sp5g10260 Schrenkiella parvula HOM05D002214 ORTHO05D007367 2.7e-75 286.6 422 41.2
TPR.G14558 Trifolium pratense HOM05D002214 ORTHO05D007367 2.7e-75 286.6 431 39.9
Eucgr.G03301 Eucalyptus grandis HOM05D002214 ORTHO05D007367 3.5e-75 286.2 408 41.7
Eucgr.G03320 Eucalyptus grandis HOM05D002214 ORTHO05D007367 3.5e-75 286.2 408 41.7
A03p48610 Brassica napus HOM05D002214 ORTHO05D007367 7.8e-75 285.0 421 39.9
TAR633G1256 Trochodendron aralioides HOM05D002214 ORTHO05D007367 7.8e-75 285.0 364 42.0
CSS0000146 Camellia sinensis var. sinensis HOM05D002214 ORTHO05D007367 1.3e-74 284.3 399 41.9
Nitab4.5_0001244g0060 Nicotiana tabacum HOM05D002214 ORTHO05D007367 5.1e-74 282.3 408 42.2
Atru.chr11.2515 Acer truncatum HOM05D002214 ORTHO05D007367 8.7e-74 281.6 405 43.0
C07p46730 Brassica napus HOM05D002214 ORTHO05D007367 2.5e-73 280.0 421 39.4
EL10Ac2g04369 Beta vulgaris HOM05D002214 ORTHO05D007367 3.3e-73 279.6 386 43.0
BcaC06g33377 Brassica carinata HOM05D002214 ORTHO05D007367 4.3e-73 279.3 421 39.2
Thhalv10010397m.g Eutrema salsugineum HOM05D002214 ORTHO05D007367 5.6e-73 278.9 415 41.2
DCAR_022375 Daucus carota HOM05D002214 ORTHO05D007367 9.6e-73 278.1 406 39.2
THA.LOC104817574 Tarenaya hassleriana HOM05D002214 ORTHO05D007367 2.1e-72 276.9 420 41.2
AT3G52030 Arabidopsis thaliana HOM05D002214 ORTHO05D007367 4.8e-72 275.8 432 39.4
FvH4_7g01770 Fragaria vesca HOM05D002214 ORTHO05D007367 6.2e-72 275.4 297 49.5
Nn7g36334 Nelumbo nucifera HOM05D002214 ORTHO05D007367 6.2e-72 275.4 399 39.8
Nitab4.5_0008942g0050 Nicotiana tabacum HOM05D002214 ORTHO05D007367 8.1e-72 275.0 392 44.4
PSO339G3363 Papaver somniferum HOM05D002214 ORTHO05D007367 8.1e-72 275.0 421 41.1
BolC7t45191H Brassica oleracea HOM05D002214 ORTHO05D007367 2.4e-71 273.5 438 37.7
BcaC06g33020 Brassica carinata HOM05D002214 ORTHO05D007367 3.1e-71 273.1 422 38.6
CARHR161660 Cardamine hirsuta HOM05D002214 ORTHO05D007367 6.9e-71 271.9 426 39.0
AUR62023095 Chenopodium quinoa HOM05D002214 ORTHO05D007367 2.6e-70 270.0 406 40.9
PSO384G3385 Papaver somniferum HOM05D002214 ORTHO05D007367 1.3e-69 267.7 419 40.3
AL5G32570 Arabidopsis lyrata HOM05D002214 ORTHO05D007367 2.9e-69 266.5 441 37.6
Peaxi162Scf01270g00126 Petunia axillaris HOM05D002214 ORTHO05D007367 3.8e-69 266.2 444 39.6
Lsat_1_v5_gn_7_35840 Lactuca sativa HOM05D002214 ORTHO05D007367 3.2e-68 263.1 431 37.8
Cc02_g28820 Coffea canephora HOM05D002214 ORTHO05D007367 9.3e-68 261.5 533 32.8
Carub.0005s1835 Capsella rubella HOM05D002214 ORTHO05D007367 1.2e-67 261.2 423 37.8
Gohir.D08G163300 Gossypium hirsutum HOM05D002214 ORTHO05D007367 2.7e-67 260.0 291 46.0
SGA_v2.0_scaffold5G02954 Striga asiatica HOM05D002214 ORTHO05D007367 6.0e-67 258.8 430 37.2
PGR031G3638 Punica granatum HOM05D002214 ORTHO05D007367 1.5e-65 254.2 465 36.8
BraA03t13966Z Brassica rapa HOM05D002214 ORTHO05D007367 3.3e-65 253.1 424 37.0
MBI03_g28525_MAGBIO Magnolia biondii HOM05D002214 ORTHO05D007367 2.8e-64 250.0 424 38.0
Migut.N01800 Erythranthe guttata HOM05D002214 ORTHO05D007367 6.2e-64 248.8 460 36.3
ECA236G0637 Erigeron canadensis HOM05D002214 ORTHO05D001664 1.4e-60 237.7 405 35.8
HPP92_021380 Vanilla planifolia HOM05D002214 ORTHO05D007367 7.1e-60 235.3 422 36.7
Ah.16g100650 Amaranthus hybridus HOM05D002214 ORTHO05D007367 1.2e-59 234.6 368 38.9
Zm00001eb091260 Zea mays HOM05D002214 ORTHO05D007367 5.1e-58 229.2 341 37.0
ATR0782G063 Amborella trichopoda HOM05D002214 ORTHO05D007367 8.7e-58 228.4 408 35.3
AUR62009418 Chenopodium quinoa HOM05D002214 ORTHO05D007367 2.5e-57 226.9 360 40.3
Dinv07431 Davidia involucrata HOM05D002214 ORTHO05D005113 2.5e-57 226.9 310 42.9
unitig_22.g5896 Utricularia gibba HOM05D002214 ORTHO05D007367 1.8e-55 220.7 365 37.0
Os11g0182400 Oryza sativa ssp. japonica HOM05D002214 ORTHO05D007367 3.4e-54 216.5 343 36.4
Cpa.g.sc125.50 Carica papaya HOM05D002214 ORTHO05D007367 4.6e-51 206.1 197 52.8
CDE04G0429 Ceratophyllum demersum HOM05D002214 ORTHO05D007367 7.4e-49 198.7 204 50.5
Hma1.2p1_0685F.1_g203270 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 1.5e-46 191.0 148 60.1
Lj9A641T67 Lonicera japonica HOM05D002214 ORTHO05D007367 2.9e-45 186.8 286 38.5
Hund16633 Selenicereus undatus HOM05D002214 ORTHO05D007367 1.8e-39 167.5 151 53.0
FAN06G4994 Fragaria x ananassa HOM05D002214 ORTHO05D007367 2.9e-37 160.2 134 60.4
MD07G1016900 Malus domestica HOM05D002214 ORTHO05D007367 8.5e-37 158.7 186 44.6
FAN24G1013 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.5e-33 147.9 373 32.2
FAN24G2408 Fragaria x ananassa HOM05D002214 ORTHO05D007367 4.3e-33 146.4 432 31.9
FvH4_2g17890 Fragaria vesca HOM05D002214 ORTHO05D007367 5.7e-33 146.0 373 32.2
QL04p010068 Quercus lobata HOM05D002214 ORTHO05D007367 5.7e-33 146.0 310 33.2
FvH4_2g17910 Fragaria vesca HOM05D002214 ORTHO05D007367 3.7e-32 143.3 201 40.8
FAN24G3278 Fragaria x ananassa HOM05D002214 ORTHO05D007367 3.7e-32 143.3 201 40.8
Oeu051405.1 Olea europaea HOM05D002214 ORTHO05D007367 1.1e-31 141.7 311 31.5
FAN27G1164 Fragaria x ananassa HOM05D002214 ORTHO05D007367 9.1e-31 138.7 393 32.3
COL.COLO4_12334 Corchorus olitorius HOM05D000031 ORTHO05D000030 2.9e-29 133.7 292 32.2
FAN15G3441 Fragaria x ananassa HOM05D002214 ORTHO05D007367 4.2e-28 129.8 445 29.7
Aa31LG10G14900 Aethionema arabicum HOM05D002214 ORTHO05D007367 7.2e-28 129.0 117 54.7
FAN06G2164 Fragaria x ananassa HOM05D002214 ORTHO05D007367 4.4e-25 119.8 198 37.9
FAN27G1816 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.3e-24 118.2 152 41.4
HanXRQChr04g0119861 Helianthus annuus HOM05D002214 ORTHO05D007367 4.5e-22 109.8 282 28.7
Oeu016638.1 Olea europaea HOM05D002214 ORTHO05D007367 5.9e-22 109.4 104 52.9
SalBow6G2835 Salvia bowleyana HOM05D002214 ORTHO05D007367 2.9e-21 107.1 306 29.4
QL04p010120 Quercus lobata HOM05D002214 ORTHO05D007367 2.1e-19 100.9 245 30.6
AagrBONN_evm.TU.Sc2ySwM_344.2511 Anthoceros agrestis HOM05D002214 ORTHO05D007367 8.0e-19 99.0 295 28.1
Hund16632 Selenicereus undatus HOM05D002214 ORTHO05D007367 1.4e-18 98.2 161 38.5
Aa31LG10G14890 Aethionema arabicum HOM05D002214 ORTHO05D007367 2.0e-17 94.4 214 32.7
Haze_03149 Corylus avellana HOM05D002214 ORTHO05D007367 1.3e-16 91.7 408 24.8
Haze_03152 Corylus avellana HOM05D002214 ORTHO05D007367 1.3e-16 91.7 408 24.8
Pp3c8_19810 Physcomitrium patens HOM05D002214 ORTHO05D007367 6.5e-13 79.3 348 22.1
Thecc.01G405700 Theobroma cacao HOM05D002214 ORTHO05D007367 2.1e-11 74.3 85 45.9
Mapoly0009s0234 Marchantia polymorpha HOM05D002214 ORTHO05D007367 2.3e-10 70.9 144 30.6
FAN27G0866 Fragaria x ananassa HOM05D002214 ORTHO05D007367 2.0e-09 67.8 63 52.4
SEGI_07097 Sequoiadendron giganteum HOM05D002214 ORTHO05D007367 3.7e-08 63.5 82 40.2
Thecc.01G405800 Theobroma cacao HOM05D002214 ORTHO05D007367 3.7e-08 63.5 53 56.6
SEGI_30351 Sequoiadendron giganteum HOM05D002214 ORTHO05D007367 4.8e-08 63.2 72 43.1
Cpa.g.sc125.51 Carica papaya HOM05D002214 ORTHO05D007367 2.4e-07 60.8 114 33.3
FAN24G0587 Fragaria x ananassa HOM05D002214 ORTHO05D045595 1.6e-06 58.2 89 40.4
FAN24G2079 Fragaria x ananassa HOM05D002214 ORTHO05D007367 4.5e-06 56.6 46 54.3


User provided reference genes

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