Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023535.2 Cucumis melo HOM05D006280 ORTHO05D007876 0.0e+00 1206.4 662 100.0
ClCG09G004310 Citrullus lanatus HOM05D006280 ORTHO05D007876 7.0e-263 910.6 713 73.8
CsaV3_7G031230 Cucumis sativus L. HOM05D006280 ORTHO05D007876 3.4e-233 812.0 541 83.5
Sed0005202 Sechium edule HOM05D006280 ORTHO05D007876 2.3e-229 799.3 662 70.8
Sed0013445 Sechium edule HOM05D006280 ORTHO05D007876 6.0e-222 774.6 661 68.5
QL04p005292 Quercus lobata HOM05D006280 ORTHO05D007876 5.2e-157 558.9 663 53.4
Haze_03235 Corylus avellana HOM05D006280 ORTHO05D007876 7.0e-154 548.5 662 50.3
CSS0048133 Camellia sinensis var. sinensis HOM05D006280 ORTHO05D007876 3.6e-150 536.2 685 48.5
Thecc.01G413600 Theobroma cacao HOM05D006280 ORTHO05D007876 6.8e-149 531.9 664 49.8
Duzib268G1473 Durio zibethinus HOM05D006280 ORTHO05D007876 2.7e-145 520.0 663 48.6
Gohir.A11G160200 Gossypium hirsutum HOM05D006280 ORTHO05D007876 5.5e-143 512.3 657 48.6
Gohir.D11G166400 Gossypium hirsutum HOM05D006280 ORTHO05D007876 2.3e-141 506.9 657 47.6
Gorai.007G177400 Gossypium raimondii HOM05D006280 ORTHO05D007876 2.3e-141 506.9 657 47.6
TWI09G0861 Tripterygium wilfordii HOM05D006280 ORTHO05D007876 1.1e-138 498.0 649 47.1
CiPaw.13G003200 Carya illinoinensis HOM05D006280 ORTHO05D007876 4.5e-137 492.7 655 47.2
Actinidia20679 Actinidia chinensis HOM05D006280 ORTHO05D007876 1.0e-136 491.5 703 46.2
CAN.G170.124 Capsicum annuum HOM05D006280 ORTHO05D007876 6.8e-133 478.8 697 44.2
Nitab4.5_0003361g0010 Nicotiana tabacum HOM05D006280 ORTHO05D007876 1.2e-132 478.0 696 45.0
Peaxi162Scf00428g00816 Petunia axillaris HOM05D006280 ORTHO05D007876 1.3e-131 474.6 697 44.6
Potri.001G269700 Populus trichocarpa HOM05D006280 ORTHO05D007876 6.4e-131 472.2 653 47.2
TWI73G0538 Tripterygium wilfordii HOM05D006280 ORTHO05D007876 3.0e-128 463.4 643 47.0
PGSC0003DMG400006815 Solanum tuberosum HOM05D006280 ORTHO05D007876 1.5e-127 461.1 702 43.3
Lj9A629T105 Lonicera japonica HOM05D006280 ORTHO05D007876 6.2e-126 455.7 680 45.3
MD02G1315100 Malus domestica HOM05D006280 ORTHO05D007876 2.6e-124 450.3 648 45.7
Nitab4.5_0001542g0030 Nicotiana tabacum HOM05D006280 ORTHO05D007876 1.3e-123 448.0 697 43.0
Sopen01g033930 Solanum pennellii HOM05D006280 ORTHO05D007876 8.3e-123 445.3 700 42.1
Cpa.g.sc234.10 Carica papaya HOM05D006280 ORTHO05D007876 7.8e-121 438.7 652 43.9
Cc02_g27560 Coffea canephora HOM05D006280 ORTHO05D007876 1.0e-120 438.3 717 43.1
Hund03633 Selenicereus undatus HOM05D006280 ORTHO05D007876 3.9e-120 436.4 649 43.3
Ciclev10030953m.g Citrus clementina HOM05D006280 ORTHO05D007876 5.1e-120 436.0 632 44.0
Prupe.2G009900 Prunus persica HOM05D006280 ORTHO05D007876 5.1e-120 436.0 648 47.7
Sc14g0005130 Simmondsia chinensis HOM05D006280 ORTHO05D007876 2.5e-119 433.7 663 42.5
SGA_v2.0_scaffold167G38459 Striga asiatica HOM05D006280 ORTHO05D007876 2.8e-118 430.3 698 42.6
Hma1.2p1_0280F.1_g112910 Hydrangea macrophylla HOM05D006280 ORTHO05D007876 1.4e-117 427.9 700 46.0
Migut.B01331 Erythranthe guttata HOM05D006280 ORTHO05D007876 4.9e-115 419.5 722 41.7
SalBow7G2237 Salvia bowleyana HOM05D006280 ORTHO05D007876 3.0e-112 410.2 715 40.7
Aa31LG10G7200 Aethionema arabicum HOM05D006280 ORTHO05D007876 1.9e-111 407.5 650 42.6
MSTRG.20601 Avicennia marina HOM05D006280 ORTHO05D007876 2.5e-111 407.1 714 41.3
THA.LOC104817627 Tarenaya hassleriana HOM05D006280 ORTHO05D007876 2.1e-110 404.1 653 43.2
THA.LOC104802360 Tarenaya hassleriana HOM05D006280 ORTHO05D007876 6.2e-110 402.5 660 42.0
PGR044G1516 Punica granatum HOM05D006280 ORTHO05D007876 2.6e-108 397.1 651 42.1
FAN03G0134 Fragaria x ananassa HOM05D006280 ORTHO05D007876 2.9e-107 393.7 651 41.0
GSVIVG01032060001 Vitis vinifera HOM05D006280 ORTHO05D007876 3.8e-107 393.3 652 41.1
CANSAT01G2414 Cannabis sativa HOM05D006280 ORTHO05D007876 6.4e-107 392.5 675 41.8
QL04p005267 Quercus lobata HOM05D006280 ORTHO05D007876 6.4e-107 392.5 580 48.1
Potri.009G064200 Populus trichocarpa HOM05D006280 ORTHO05D007876 2.4e-106 390.6 598 47.0
Solyc01g086930.4 Solanum lycopersicum HOM05D006280 ORTHO05D007876 7.1e-106 389.0 648 40.6
Sabra09G0047500 Salix brachista HOM05D006280 ORTHO05D007876 9.3e-106 388.7 640 42.5
Lsat_1_v5_gn_4_46080 Lactuca sativa HOM05D006280 ORTHO05D007876 2.1e-105 387.5 661 40.5
Eucgr.J01260 Eucalyptus grandis HOM05D006280 ORTHO05D007876 3.5e-105 386.7 650 40.2
Manes.10G146200 Manihot esculenta HOM05D006280 ORTHO05D007876 2.8e-102 377.1 651 41.5
EL10Ac6g13519 Beta vulgaris HOM05D006280 ORTHO05D007876 2.0e-100 370.9 698 37.4
AUR62028915 Chenopodium quinoa HOM05D006280 ORTHO05D007876 3.4e-100 370.2 650 39.7
HanXRQChr16g0519571 Helianthus annuus HOM05D006280 ORTHO05D007876 1.3e-99 368.2 661 42.2
COL.COLO4_23913 Corchorus olitorius HOM05D006280 ORTHO05D008652 4.9e-99 366.3 633 40.3
Oeu039119.3 Olea europaea HOM05D006280 ORTHO05D007876 1.1e-98 365.2 730 40.0
RcHm_v2.0_Chr1g0314941 Rosa chinensis HOM05D006280 ORTHO05D007876 1.0e-96 358.6 655 42.0
SGA_v2.0_scaffold119G32715 Striga asiatica HOM05D006280 ORTHO05D007876 1.0e-96 358.6 718 38.3
FvH4_7g00721 Fragaria vesca HOM05D006280 ORTHO05D007876 3.3e-95 353.6 645 38.9
AL5G32680 Arabidopsis lyrata HOM05D006280 ORTHO05D007876 4.3e-95 353.2 656 41.2
Carub.0005s1845 Capsella rubella HOM05D006280 ORTHO05D007876 9.6e-95 352.1 667 39.3
FAN10G1835 Fragaria x ananassa HOM05D006280 ORTHO05D007876 2.0e-92 344.4 646 38.4
AUR62005634 Chenopodium quinoa HOM05D006280 ORTHO05D007876 4.9e-91 339.7 615 38.7
Nn2g15492 Nelumbo nucifera HOM05D006280 ORTHO05D007876 1.4e-90 338.2 719 36.0
MD07G1006900 Malus domestica HOM05D006280 ORTHO05D007876 6.0e-89 332.8 522 42.0
AT3G52115 Arabidopsis thaliana HOM05D006280 ORTHO05D007876 2.3e-88 330.9 650 39.2
Thhalv10010216m.g Eutrema salsugineum HOM05D006280 ORTHO05D007876 8.7e-88 328.9 655 40.8
Sp5g10170 Schrenkiella parvula HOM05D006280 ORTHO05D007876 1.1e-87 328.6 653 40.4
ECA234G4003 Erigeron canadensis HOM05D006280 ORTHO05D007876 2.0e-84 317.8 684 38.9
PSO447G0216 Papaver somniferum HOM05D006280 ORTHO05D007876 2.0e-84 317.8 666 37.4
Dinv09375 Davidia involucrata HOM05D006280 ORTHO05D007876 3.4e-84 317.0 326 55.2
FAN06G1370 Fragaria x ananassa HOM05D006280 ORTHO05D007876 4.9e-83 313.2 613 37.2
CARHR161840 Cardamine hirsuta HOM05D006280 ORTHO05D007876 1.4e-82 311.6 652 39.7
Aqoxy2G00116 Aquilegia oxysepala HOM05D006280 ORTHO05D007876 2.5e-82 310.8 651 36.3
Lalb_Chr03g0033951 Lupinus albus HOM05D006280 ORTHO05D007876 3.2e-82 310.5 663 36.0
Hma1.2p1_0845F.1_g227480 Hydrangea macrophylla HOM05D006280 ORTHO05D007876 1.2e-81 308.5 551 43.6
FAN01G3121 Fragaria x ananassa HOM05D006280 ORTHO05D007876 3.7e-78 297.0 714 36.4
BcaB02g08586 Brassica carinata HOM05D006280 ORTHO05D007876 1.1e-77 295.4 650 35.8
Dinv14267 Davidia involucrata HOM05D006280 ORTHO05D007876 5.3e-77 293.1 465 44.7
Rhsim01G0130600 Rhododendron simsii HOM05D006280 ORTHO05D007876 5.3e-77 293.1 479 44.7
MBI01_g40597_MAGBIO Magnolia biondii HOM05D006280 ORTHO05D007876 2.6e-76 290.8 675 35.1
FAN01G1556 Fragaria x ananassa HOM05D006280 ORTHO05D007876 1.1e-69 268.9 432 41.0
PSO210G6454 Papaver somniferum HOM05D006280 ORTHO05D007876 1.4e-69 268.5 328 48.8
A04p07250 Brassica napus HOM05D006280 ORTHO05D007876 3.1e-69 267.3 650 36.8
BraA04t16420Z Brassica rapa HOM05D006280 ORTHO05D007876 3.1e-69 267.3 650 36.8
Ca_23874_v3 Cicer arietinum L. HOM05D006280 ORTHO05D007876 4.1e-69 266.9 664 33.6
Psat4g148560 Pisum sativum HOM05D006280 ORTHO05D007876 1.0e-67 262.3 717 31.1
C04p40810 Brassica napus HOM05D006280 ORTHO05D007876 6.5e-67 259.6 656 36.4
BolC4t25665H Brassica oleracea HOM05D006280 ORTHO05D007876 6.5e-67 259.6 656 36.4
BcaC02g09279 Brassica carinata HOM05D006280 ORTHO05D007876 1.1e-66 258.8 649 36.7
Glyma.12G238500 Glycine max HOM05D006280 ORTHO05D007876 2.7e-65 254.2 381 43.6
Lj3g0014839 Lotus japonicus HOM05D006280 ORTHO05D007876 2.7e-65 254.2 705 31.1
Dinv09374 Davidia involucrata HOM05D006280 ORTHO05D007876 1.0e-64 252.3 370 49.5
TPR.G21742 Trifolium pratense HOM05D006280 ORTHO05D007876 1.4e-64 251.9 672 32.7
Zm00001eb388310 Zea mays HOM05D006280 ORTHO05D007876 7.7e-60 236.1 669 32.4
VMungo1127G1733 Vigna mungo HOM05D006280 ORTHO05D007876 2.9e-59 234.2 415 40.2
arahy.Tifrunner.gnm1.ann1.JHR7K6 Arachis hypogaea HOM05D006280 ORTHO05D007876 5.0e-59 233.4 697 31.6
TAR636G0096 Trochodendron aralioides HOM05D006280 ORTHO05D007876 8.5e-59 232.6 278 51.4
arahy.Tifrunner.gnm1.ann1.0Y513H Arachis hypogaea HOM05D006280 ORTHO05D007876 3.2e-58 230.7 325 43.7
Os06g0613400 Oryza sativa ssp. japonica HOM05D006280 ORTHO05D007876 1.2e-57 228.8 694 30.4
ATR0824G264 Amborella trichopoda HOM05D006280 ORTHO05D007876 5.1e-56 223.4 718 31.5
Medtr8g036940 Medicago truncatula HOM05D006280 ORTHO05D007876 4.4e-55 220.3 665 30.8
Rhsim01G0130700 Rhododendron simsii HOM05D006280 ORTHO05D007876 4.8e-54 216.9 247 52.6
Glyma.13G204200 Glycine max HOM05D006280 ORTHO05D007876 7.7e-52 209.5 215 54.0
Phvul.011G212200 Phaseolus vulgaris HOM05D006280 ORTHO05D007876 1.0e-48 199.1 393 37.2
vmacro21180 Vaccinium macrocarpon HOM05D006280 ORTHO05D007876 1.3e-46 192.2 432 37.7
CDE04G2764 Ceratophyllum demersum HOM05D006280 ORTHO05D007876 3.5e-44 184.1 319 39.2
Manes.07G004300 Manihot esculenta HOM05D006280 ORTHO05D007876 9.4e-42 176.0 304 39.5
vmacro21179 Vaccinium macrocarpon HOM05D006280 ORTHO05D007876 9.4e-42 176.0 149 62.4
unitig_8.g3859 Utricularia gibba HOM05D006280 ORTHO05D007876 2.1e-41 174.9 526 33.5
Dinv14268 Davidia involucrata HOM05D006280 ORTHO05D007876 5.2e-40 170.2 133 65.4
Hma1.2p1_0312F.1_g121350 Hydrangea macrophylla HOM05D006280 ORTHO05D007876 1.7e-38 165.2 207 47.8
TAR636G3118 Trochodendron aralioides HOM05D006280 ORTHO05D007876 3.5e-36 157.5 376 37.5
SEGI_32119 Sequoiadendron giganteum HOM05D006280 ORTHO05D007876 7.7e-36 156.4 707 24.6
MSTRG.5009 Avicennia marina HOM05D006280 ORTHO05D007876 2.9e-35 154.5 373 35.1
DCAR_006240 Daucus carota HOM05D006280 ORTHO05D007876 5.4e-29 133.7 186 46.8
SMO196G0201 Selaginella moellendorffii HOM05D006280 ORTHO05D007876 4.0e-24 117.5 328 32.3
QL04p005379 Quercus lobata HOM05D000011 ORTHO05D007876 9.8e-23 112.8 299 33.1
AagrBONN_evm.TU.Sc2ySwM_117.1753 Anthoceros agrestis HOM05D006280 ORTHO05D007876 5.4e-21 107.1 82 57.3
Pp3c16_2140 Physcomitrium patens HOM05D006280 ORTHO05D007876 2.7e-20 104.8 121 46.3
QL04p005302 Quercus lobata HOM05D006280 ORTHO05D007876 1.3e-19 102.4 193 37.8
unitig_8.g3860 Utricularia gibba HOM05D006280 ORTHO05D007876 1.3e-19 102.4 139 48.2
PSO210G6643 Papaver somniferum HOM05D006280 ORTHO05D007876 1.0e-16 92.8 176 38.6
THA.LOC109117177 Tarenaya hassleriana HOM05D006280 ORTHO05D007876 1.8e-16 92.0 220 35.5
MCO05G132 Micromonas commoda HOM05D006280 ORTHO05D007876 7.3e-10 70.1 87 40.2
HPP92_006144 Vanilla planifolia HOM05D002569 ORTHO05D006728 7.3e-10 70.1 196 29.1
Mapoly0001s0083 Marchantia polymorpha HOM05D006280 ORTHO05D007876 1.8e-08 65.5 602 23.9


User provided reference genes

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