Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023518.2 Cucumis melo HOM05D004413 ORTHO05D005199 6.7e-254 880.2 441 100.0
CsaV3_7G031400 Cucumis sativus L. HOM05D004413 ORTHO05D005199 1.6e-199 699.5 418 87.3
ClCG09G003830 Citrullus lanatus HOM05D004413 ORTHO05D005199 4.8e-183 644.8 418 80.4
Sed0007945 Sechium edule HOM05D004413 ORTHO05D005199 1.1e-147 527.3 411 69.3
Sed0010518 Sechium edule HOM05D004413 ORTHO05D005199 2.3e-145 519.6 418 67.2
Haze_03259 Corylus avellana HOM05D004413 ORTHO05D005199 2.5e-107 393.3 413 53.3
GSVIVG01001402001 Vitis vinifera HOM05D004413 ORTHO05D005199 8.9e-105 384.8 401 52.6
Cfa010719 Carpinus fangiana HOM05D004413 ORTHO05D005199 1.1e-102 377.9 413 53.3
Manes.10G150400 Manihot esculenta HOM05D004413 ORTHO05D005199 9.2e-102 374.8 406 49.3
Thecc.01G415800 Theobroma cacao HOM05D004413 ORTHO05D005199 1.6e-101 374.0 404 50.0
MD07G1003300 Malus domestica HOM05D004413 ORTHO05D005199 5.1e-100 369.0 402 53.0
arahy.Tifrunner.gnm1.ann1.X2RX6E Arachis hypogaea HOM05D004413 ORTHO05D005199 1.1e-99 367.9 414 51.0
QL04p000397 Quercus lobata HOM05D004413 ORTHO05D005199 1.2e-98 364.4 463 46.0
QL04p002426 Quercus lobata HOM05D004413 ORTHO05D005199 1.2e-98 364.4 441 48.1
Gohir.A08G146400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.6e-98 364.0 406 48.8
Ciclev10031642m.g Citrus clementina HOM05D004413 ORTHO05D005199 1.1e-97 361.3 416 49.5
arahy.Tifrunner.gnm1.ann1.8FHU3N Arachis hypogaea HOM05D004413 ORTHO05D005199 2.3e-97 360.1 414 50.2
Gorai.004G174800 Gossypium raimondii HOM05D004413 ORTHO05D005199 5.2e-97 359.0 406 48.3
Gohir.A08G005500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 6.8e-97 358.6 406 48.3
Atru.chr11.2687 Acer truncatum HOM05D004413 ORTHO05D005199 1.2e-96 357.8 413 49.2
Gohir.D08G167400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.2e-96 357.8 406 48.3
Gohir.A01G019401 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.6e-96 356.7 402 48.5
COL.COLO4_30064 Corchorus olitorius HOM05D004413 ORTHO05D005199 4.4e-96 355.9 415 49.4
RcHm_v2.0_Chr7g0230361 Rosa chinensis HOM05D004413 ORTHO05D005199 4.4e-96 355.9 401 51.9
Duzib138G1189 Durio zibethinus HOM05D004413 ORTHO05D005199 5.8e-96 355.5 400 48.5
Glyma.16G203400 Glycine max HOM05D004413 ORTHO05D005199 3.7e-95 352.8 425 47.5
MD02G1318000 Malus domestica HOM05D004413 ORTHO05D005199 3.7e-95 352.8 402 51.2
FAN13G1137 Fragaria x ananassa HOM05D004413 ORTHO05D005199 4.9e-95 352.4 404 51.0
Glyma.09G152600 Glycine max HOM05D004413 ORTHO05D005199 6.4e-95 352.1 422 47.4
CiPaw.16G012500 Carya illinoinensis HOM05D004413 ORTHO05D005199 2.4e-94 350.1 387 51.9
FAN18G0644 Fragaria x ananassa HOM05D004413 ORTHO05D005199 5.4e-94 349.0 404 50.7
FAN08G0618 Fragaria x ananassa HOM05D004413 ORTHO05D005199 1.2e-93 347.8 413 50.1
Medtr6g463300 Medicago truncatula HOM05D004413 ORTHO05D005199 1.6e-93 347.4 417 49.2
FvH4_5g32720 Fragaria vesca HOM05D004413 ORTHO05D005199 2.7e-93 346.7 406 50.0
TWI09G1219 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 2.7e-93 346.7 404 47.3
Lalb_Chr19g0124241 Lupinus albus HOM05D004413 ORTHO05D005199 1.3e-92 344.4 424 47.4
Potri.001G228000 Populus trichocarpa HOM05D004413 ORTHO05D005199 3.9e-92 342.8 422 45.7
THA.LOC104826126 Tarenaya hassleriana HOM05D004413 ORTHO05D005199 3.9e-92 342.8 406 49.0
TAR636G2532 Trochodendron aralioides HOM05D004413 ORTHO05D005199 5.6e-91 339.0 428 46.0
Phvul.004G126300 Phaseolus vulgaris HOM05D004413 ORTHO05D005199 7.3e-91 338.6 410 45.9
MSTRG.28094 Avicennia marina HOM05D004413 ORTHO05D005199 9.6e-91 338.2 418 46.4
TPR.G25309 Trifolium pratense HOM05D004413 ORTHO05D005199 1.6e-90 337.4 407 48.6
CANSAT01G0573 Cannabis sativa HOM05D004413 ORTHO05D005199 3.6e-90 336.3 421 46.3
Ca_02163_v3 Cicer arietinum L. HOM05D004413 ORTHO05D005199 4.7e-90 335.9 415 46.7
CANSAT01G1789 Cannabis sativa HOM05D004413 ORTHO05D005199 8.1e-90 335.1 421 46.1
Carub.0001s0418 Capsella rubella HOM05D004413 ORTHO05D005199 1.8e-89 334.0 394 45.7
CSS0018065 Camellia sinensis var. sinensis HOM05D004413 ORTHO05D005199 2.6e-88 330.1 417 47.2
Lj2g0027526 Lotus japonicus HOM05D004413 ORTHO05D005199 9.9e-88 328.2 400 48.0
Lj9A624G21 Lonicera japonica HOM05D004413 ORTHO05D005199 1.7e-87 327.4 402 48.3
Aa31LG1G19950 Aethionema arabicum HOM05D004413 ORTHO05D005199 1.4e-86 324.3 394 47.0
vmacro21162 Vaccinium macrocarpon HOM05D004413 ORTHO05D005199 1.4e-86 324.3 446 46.2
AUR62016087 Chenopodium quinoa HOM05D004413 ORTHO05D005199 2.4e-86 323.6 425 45.2
Sabra16G0135900 Salix brachista HOM05D004413 ORTHO05D005199 4.2e-86 322.8 433 44.3
Hma1.2p1_0038F.1_g024150 Hydrangea macrophylla HOM05D004413 ORTHO05D005199 5.4e-86 322.4 410 46.6
AUR62035034 Chenopodium quinoa HOM05D004413 ORTHO05D005199 7.1e-86 322.0 418 45.7
Cpa.g.sc189.31 Carica papaya HOM05D004413 ORTHO05D005199 1.6e-85 320.9 390 46.4
CANSAT64G0940 Cannabis sativa HOM05D004413 ORTHO05D005199 2.7e-85 320.1 391 48.6
VMungo0464G1648 Vigna mungo HOM05D004413 ORTHO05D005199 3.9e-84 316.2 410 44.1
EL10Ac3g05776 Beta vulgaris HOM05D004413 ORTHO05D005199 8.7e-84 315.1 425 45.4
Thhalv10007024m.g Eutrema salsugineum HOM05D004413 ORTHO05D005199 8.7e-84 315.1 403 45.2
PGR031G3941 Punica granatum HOM05D004413 ORTHO05D005199 1.1e-83 314.7 397 44.8
Prupe.2G005000 Prunus persica HOM05D004413 ORTHO05D005199 1.5e-83 314.3 419 46.1
TPR.G37653 Trifolium pratense HOM05D004413 ORTHO05D005199 3.3e-83 313.2 405 46.2
Oeu013591.1 Olea europaea HOM05D004413 ORTHO05D005199 9.6e-83 311.6 407 46.2
Rhsim01G0132100 Rhododendron simsii HOM05D004413 ORTHO05D005199 1.6e-82 310.8 499 41.1
AT1G04945 Arabidopsis thaliana HOM05D004413 ORTHO05D005199 2.8e-82 310.1 399 45.4
Sc17g0005470 Simmondsia chinensis HOM05D004413 ORTHO05D005199 3.1e-81 306.6 409 45.0
Hund04656 Selenicereus undatus HOM05D004413 ORTHO05D005199 9.0e-81 305.1 386 46.1
CARHR004350 Cardamine hirsuta HOM05D004413 ORTHO05D005199 4.4e-80 302.8 399 44.9
BcaC07g36870 Brassica carinata HOM05D004413 ORTHO05D005199 7.6e-80 302.0 393 44.5
C08p01610 Brassica napus HOM05D004413 ORTHO05D005199 7.6e-80 302.0 393 44.8
BolC8t46964H Brassica oleracea HOM05D004413 ORTHO05D005199 7.6e-80 302.0 393 44.8
Aqoxy2G00074 Aquilegia oxysepala HOM05D004413 ORTHO05D005199 1.3e-79 301.2 393 44.3
Nn3g19386 Nelumbo nucifera HOM05D004413 ORTHO05D005199 3.8e-79 299.7 434 40.8
GSVIVG01037065001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.1e-78 298.1 287 53.3
Psat1g110760 Pisum sativum HOM05D004413 ORTHO05D005199 1.4e-78 297.7 405 45.4
AL1G14670 Arabidopsis lyrata HOM05D004413 ORTHO05D005199 2.4e-78 297.0 397 44.1
Dinv43918 Davidia involucrata HOM05D004413 ORTHO05D005199 9.3e-78 295.0 367 44.4
A08p36630 Brassica napus HOM05D004413 ORTHO05D005199 2.7e-77 293.5 400 44.0
BraA08t35565Z Brassica rapa HOM05D004413 ORTHO05D005199 2.7e-77 293.5 400 44.0
Sp1g03790 Schrenkiella parvula HOM05D004413 ORTHO05D005199 5.1e-76 289.3 404 42.1
Psat6g015760 Pisum sativum HOM05D004413 ORTHO05D005199 1.5e-75 287.7 310 51.0
BcaB03g13464 Brassica carinata HOM05D004413 ORTHO05D005199 2.5e-75 287.0 394 42.4
Lalb_Chr19g0124231 Lupinus albus HOM05D004413 ORTHO05D005199 3.3e-75 286.6 290 52.8
Migut.N01644 Erythranthe guttata HOM05D004413 ORTHO05D005199 4.3e-75 286.2 415 42.2
Lsat_1_v5_gn_4_46341 Lactuca sativa HOM05D004413 ORTHO05D005199 5.6e-75 285.8 395 43.0
Cc02_g27150 Coffea canephora HOM05D004413 ORTHO05D005199 4.8e-74 282.7 435 40.9
arahy.Tifrunner.gnm1.ann1.0XNQ2B Arachis hypogaea HOM05D004413 ORTHO05D005199 1.4e-73 281.2 385 44.2
Nitab4.5_0000346g0070 Nicotiana tabacum HOM05D004413 ORTHO05D005199 4.5e-72 276.2 426 43.2
Nitab4.5_0001006g0010 Nicotiana tabacum HOM05D004413 ORTHO05D005199 5.8e-72 275.8 392 44.9
arahy.Tifrunner.gnm1.ann1.MVM3BY Arachis hypogaea HOM05D004413 ORTHO05D005199 2.2e-71 273.9 392 43.6
Peaxi162Scf01343g00011 Petunia axillaris HOM05D004413 ORTHO05D005199 1.9e-70 270.8 353 45.6
Ah.07g208370 Amaranthus hybridus HOM05D004413 ORTHO05D005199 3.2e-70 270.0 384 42.7
CAN.G1393.6 Capsicum annuum HOM05D004413 ORTHO05D005199 3.5e-69 266.5 400 42.2
SGA_v2.0_scaffold95G28780 Striga asiatica HOM05D004413 ORTHO05D005199 6.0e-69 265.8 405 41.5
Solyc01g074020.3 Solanum lycopersicum HOM05D004413 ORTHO05D005199 1.1e-67 261.5 400 41.0
PSO210G0136 Papaver somniferum HOM05D004413 ORTHO05D005199 1.9e-67 260.8 391 40.9
PSO210G4410 Papaver somniferum HOM05D004413 ORTHO05D005199 1.3e-66 258.1 393 40.7
Atru.chr1.1383 Acer truncatum HOM05D004413 ORTHO05D005199 4.8e-66 256.1 278 48.9
SHI15877 Sapria himalayana HOM05D004413 ORTHO05D005199 5.3e-65 252.7 410 40.0
CDE04G1207 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 1.3e-63 248.1 447 37.6
CDE12G0144 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 5.5e-62 242.7 447 36.9
PSO170G4481 Papaver somniferum HOM05D004413 ORTHO05D005199 9.3e-62 241.9 406 38.4
HanXRQChr16g0520481 Helianthus annuus HOM05D004413 ORTHO05D005199 1.3e-60 238.0 318 44.0
HPP92_005742 Vanilla planifolia HOM05D004413 ORTHO05D005199 5.1e-60 236.1 425 36.7
unitig_578.g16701 Utricularia gibba HOM05D004413 ORTHO05D005199 1.1e-57 228.4 247 47.4
ATR0582G367 Amborella trichopoda HOM05D004413 ORTHO05D005199 1.5e-56 224.6 436 37.4
Lj9A625T17 Lonicera japonica HOM05D004413 ORTHO05D005199 6.5e-55 219.2 327 42.5
BcaC08g43081 Brassica carinata HOM05D004413 ORTHO05D005199 1.6e-53 214.5 242 48.8
C06p03410 Brassica napus HOM05D004413 ORTHO05D005199 4.6e-53 213.0 242 48.8
BolC6t35480H Brassica oleracea HOM05D004413 ORTHO05D005199 4.6e-53 213.0 242 48.8
A06p04180 Brassica napus HOM05D004413 ORTHO05D005199 1.8e-52 211.1 280 44.6
BraA06t23623Z Brassica rapa HOM05D004413 ORTHO05D005199 1.8e-52 211.1 280 45.0
Gohir.A11G220500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 4.5e-48 196.4 289 41.9
Zm00001eb140340 Zea mays HOM05D004413 ORTHO05D005199 3.6e-45 186.8 321 37.1
Os01g0962500 Oryza sativa ssp. japonica HOM05D004413 ORTHO05D005199 1.1e-43 181.8 333 37.8
PGSC0003DMG400006318 Solanum tuberosum HOM05D004413 ORTHO05D005199 1.3e-42 178.3 330 37.3
ECA234G1090 Erigeron canadensis HOM05D004413 ORTHO05D005199 2.8e-42 177.2 329 38.3
Sopen01g033580 Solanum pennellii HOM05D004413 ORTHO05D005199 1.5e-40 171.4 146 60.3
DCAR_015691 Daucus carota HOM05D004413 ORTHO05D005199 7.7e-40 169.1 147 58.5
SEGI_33976 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 5.0e-39 166.4 284 37.0
Actinidia21569 Actinidia chinensis HOM05D004413 ORTHO05D005199 8.5e-39 165.6 290 38.6
GSVIVG01027705001 Vitis vinifera HOM05D004413 ORTHO05D005199 4.7e-37 159.8 124 61.3
SGA_v2.0_scaffold4G02237 Striga asiatica HOM05D004413 ORTHO05D005199 3.0e-36 157.1 170 48.8
Actinidia21570 Actinidia chinensis HOM05D004413 ORTHO05D005199 3.3e-35 153.7 110 67.3
AagrBONN_evm.TU.Sc2ySwM_228.625 Anthoceros agrestis HOM05D004413 ORTHO05D005199 7.4e-35 152.5 287 34.1
Dinv43485 Davidia involucrata HOM05D004413 ORTHO05D005199 7.4e-35 152.5 169 49.1
SMO351G0528 Selaginella moellendorffii HOM05D004413 ORTHO05D005199 9.7e-35 152.1 286 36.4
Pp3c11_18200 Physcomitrium patens HOM05D004413 ORTHO05D005199 6.3e-34 149.4 288 36.5
Cre01.g049400 Chlamydomonas reinhardtii HOM05D004413 ORTHO05D005199 3.1e-33 147.1 265 35.1
Mapoly0103s0075 Marchantia polymorpha HOM05D004413 ORTHO05D005199 9.1e-33 145.6 288 34.4
GSVIVG01027710001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.3e-28 131.0 113 59.3
Actinidia15863 Actinidia chinensis HOM05D004413 ORTHO05D005199 5.2e-28 129.8 101 64.4
PSO170G2986 Papaver somniferum HOM05D004413 ORTHO05D005199 1.8e-25 121.3 211 38.4
A08p37250 Brassica napus HOM05D004413 ORTHO05D005199 1.3e-23 115.2 69 75.4
CBR_g50781 Chara braunii HOM05D004413 ORTHO05D005199 3.8e-23 113.6 262 31.7
QL04p000430 Quercus lobata HOM05D004413 ORTHO05D005199 3.8e-23 113.6 204 38.7
Sopen01g033590 Solanum pennellii HOM05D004413 ORTHO05D005199 1.1e-22 112.1 243 34.6
DCAR_015690 Daucus carota HOM05D004413 ORTHO05D005199 1.2e-19 102.1 222 35.1
Manes.10G149900 Manihot esculenta HOM05D000073 ORTHO05D000033 2.0e-19 101.3 68 70.6
PRCOL_00005718 Prasinoderma coloniale HOM05D004413 ORTHO05D005199 1.7e-18 98.2 161 39.1
HanXRQChr11g0328201 Helianthus annuus HOM05D004413 ORTHO05D005199 6.3e-18 96.3 64 68.8
Aa31LG1G19980 Aethionema arabicum HOM05D004413 ORTHO05D005199 1.3e-15 88.6 75 61.3
BraA09t42095Z Brassica rapa HOM05D004413 ORTHO05D005199 2.5e-14 84.3 90 46.7
MCO07G333 Micromonas commoda HOM05D004413 ORTHO05D005199 2.7e-13 80.9 137 36.5
TAR633G2579 Trochodendron aralioides HOM05D004413 ORTHO05D005199 1.8e-12 78.2 93 47.3
Sc24g0000530 Simmondsia chinensis HOM05D004413 ORTHO05D005199 2.4e-09 67.8 123 35.8
SEGI_10444 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 3.1e-09 67.4 187 27.8
Atru.chr1.1384 Acer truncatum HOM05D004413 ORTHO05D005199 7.0e-09 66.2 78 51.3
SEGI_03996 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 2.0e-08 64.7 187 26.7
GSVIVG01027714001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.3e-07 61.2 157 31.2
GSVIVG01018194001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.3e-06 57.4 47 55.3
Lju170C28T1 Lonicera japonica HOM05D004413 ORTHO05D005199 9.5e-06 55.8 79 41.8


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