Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 0.0e+00 1224.9 616 100.0
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 0.0e+00 1163.7 616 94.5
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 0.0e+00 1157.9 616 94.8
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 1.1e-302 1042.7 617 86.2
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 1.1e-220 770.4 626 63.6
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 1.4e-212 743.4 626 62.3
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 7.6e-211 737.6 640 61.4
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 9.9e-211 737.3 626 60.9
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 8.4e-210 734.2 625 61.6
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 2.1e-205 719.5 626 60.9
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 5.2e-204 714.9 627 60.8
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 2.1e-197 693.0 627 58.7
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 3.1e-196 689.1 617 59.2
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 1.2e-195 687.2 623 59.1
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 4.4e-195 685.3 620 57.9
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 4.4e-195 685.3 639 57.3
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 3.8e-194 682.2 621 58.0
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 9.3e-193 677.6 638 57.2
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 1.2e-192 677.2 620 57.7
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 2.1e-192 676.4 628 57.8
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 6.0e-192 674.9 636 56.1
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 1.3e-191 673.7 628 57.6
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 1.1e-190 670.6 623 57.0
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 7.4e-190 667.9 624 56.6
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 1.3e-189 667.2 616 57.8
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 2.1e-189 666.4 639 55.7
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 4.8e-189 665.2 618 57.9
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 6.2e-189 664.8 631 56.9
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 8.1e-189 664.5 634 54.9
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 3.1e-188 662.5 625 57.8
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 1.5e-187 660.2 635 56.5
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 4.5e-187 658.7 636 56.4
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 5.8e-187 658.3 666 53.0
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 5.8e-187 658.3 624 56.7
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 1.7e-186 656.8 631 57.4
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 3.8e-186 655.6 635 56.7
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 7.1e-185 651.4 624 55.1
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 1.6e-184 650.2 628 56.2
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 2.1e-184 649.8 639 56.0
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 2.7e-184 649.4 624 55.8
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 3.5e-184 649.0 627 56.8
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 6.7e-183 644.8 628 56.4
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 2.5e-182 642.9 632 55.4
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 1.3e-181 640.6 622 55.8
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 1.1e-180 637.5 623 55.7
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 1.2e-179 634.0 627 55.3
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 1.0e-178 630.9 628 56.1
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 2.9e-178 629.4 619 55.3
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 1.1e-177 627.5 629 55.3
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 2.7e-176 622.9 636 53.9
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 7.9e-176 621.3 628 55.9
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 1.8e-175 620.2 620 54.2
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 3.7e-173 612.5 629 53.9
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 1.7e-170 603.6 613 51.7
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 2.5e-169 599.7 613 52.4
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 1.0e-167 594.3 637 52.9
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 2.5e-166 589.7 637 53.1
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 3.7e-165 585.9 618 50.3
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 1.2e-163 580.9 616 51.6
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 7.7e-163 578.2 647 49.8
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 7.7e-163 578.2 631 50.2
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 7.7e-163 578.2 621 50.1
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 2.2e-162 576.6 607 52.9
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 1.1e-161 574.3 633 51.3
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 5.5e-161 572.0 647 51.8
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 9.4e-161 571.2 647 52.1
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 1.6e-160 570.5 582 53.8
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 2.1e-160 570.1 626 51.8
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 3.6e-160 569.3 649 47.6
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 4.6e-160 568.9 639 49.0
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 1.4e-159 567.4 614 49.3
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 1.8e-159 567.0 641 50.2
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 8.8e-159 564.7 647 51.5
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 1.1e-158 564.3 642 49.2
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 1.5e-158 563.9 641 48.8
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 4.8e-157 558.9 662 48.8
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 6.3e-157 558.5 636 48.9
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 1.1e-156 557.8 616 51.3
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 6.9e-156 555.1 638 49.1
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 9.1e-156 554.7 545 55.4
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 1.2e-155 554.3 631 49.0
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 1.2e-155 554.3 631 49.1
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 5.9e-155 552.0 615 49.8
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 2.9e-154 549.7 620 49.0
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 6.5e-154 548.5 638 49.1
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 8.5e-154 548.1 630 49.5
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 3.2e-153 546.2 639 48.0
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 5.5e-153 545.4 625 50.1
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 9.4e-153 544.7 627 48.0
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 1.2e-152 544.3 630 49.4
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 2.1e-152 543.5 642 48.0
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 1.4e-151 540.8 612 49.3
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 4.4e-150 535.8 623 47.2
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 2.2e-149 533.5 648 48.8
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 2.8e-149 533.1 647 49.5
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 1.7e-146 523.9 646 48.8
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 2.5e-145 520.0 618 48.1
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 7.2e-145 518.5 616 47.6
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 1.6e-144 517.3 648 48.0
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 2.0e-142 510.4 637 46.9
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 7.5e-142 508.4 653 46.6
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 3.1e-140 503.1 580 48.8
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 3.5e-139 499.6 630 47.1
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 3.8e-138 496.1 588 48.0
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 1.1e-137 494.6 537 49.0
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 1.9e-137 493.8 622 44.9
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 1.0e-135 488.0 620 44.0
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 7.5e-134 481.9 504 53.2
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 2.9e-130 469.9 547 49.9
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 1.0e-127 461.5 612 44.0
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 5.7e-126 455.7 615 42.8
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 2.2e-117 427.2 626 40.7
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 6.8e-111 405.6 669 37.7
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 5.8e-110 402.5 420 50.2
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 9.2e-108 395.2 633 39.2
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 1.4e-100 371.3 571 39.2
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 7.6e-94 349.0 718 33.8
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.9e-84 317.8 659 34.7
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 1.5e-81 308.1 618 34.5
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 5.6e-81 306.2 675 32.7
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.6e-72 278.1 811 29.0
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 7.6e-70 269.2 668 30.2
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 4.6e-67 260.0 444 37.8
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 1.2e-54 218.8 473 31.7
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 6.7e-50 203.0 466 31.1
Psat7g208160 Pisum sativum HOM05D005219 ORTHO05D006451 8.5e-45 186.0 178 54.5
Sp6g34250 Schrenkiella parvula HOM05D005219 ORTHO05D006451 1.9e-44 184.9 127 70.1
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.2e-43 182.2 207 49.3
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 2.3e-42 177.9 405 32.3
Zm00001eb243850 Zea mays HOM05D000001 ORTHO05D000003 5.7e-41 173.3 300 35.7
Os04g0439300 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 4.8e-40 170.2 128 60.9
Sabra01G0147700 Salix brachista HOM05D005219 ORTHO05D006451 3.1e-39 167.5 112 69.6
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 3.0e-34 151.0 95 68.4
HPP92_027054 Vanilla planifolia HOM05D005219 ORTHO05D006451 7.7e-30 136.3 151 49.7
Sabra04G0089200 Salix brachista HOM05D005219 ORTHO05D006451 1.3e-29 135.6 148 48.0
VMungo1383G0740 Vigna mungo HOM05D005219 ORTHO05D011240 1.1e-20 105.9 112 52.7
PGR119G0862 Punica granatum HOM05D005219 ORTHO05D006451 9.4e-20 102.8 248 35.9
SEGI_36901 Sequoiadendron giganteum HOM05D001312 ORTHO05D001832 1.4e-10 72.4 176 33.5
SMO169G0082 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 2.0e-09 68.6 125 33.6
CBR_g38007 Chara braunii HOM05D001908 ORTHO05D001892 1.3e-08 65.9 206 27.7
CBR_g31875 Chara braunii HOM05D028850 ORTHO05D006451 2.2e-08 65.1 430 23.5
Lj2C292T8 Lonicera japonica HOM05D001439 ORTHO05D002726 1.4e-07 62.4 78 41.0
ECA236G3003 Erigeron canadensis HOM05D001455 ORTHO05D001587 2.4e-07 61.6 77 39.0
Nitab4.5_0004359g0020 Nicotiana tabacum HOM05D001439 ORTHO05D002726 2.4e-07 61.6 99 33.3
Lsat_1_v5_gn_7_22781 Lactuca sativa HOM05D001439 ORTHO05D002726 3.1e-07 61.2 107 33.6
SGA_v2.0_scaffold16G07637 Striga asiatica HOM05D001439 ORTHO05D002726 4.1e-07 60.8 83 37.3
Nitab4.5_0001955g0100 Nicotiana tabacum HOM05D001439 ORTHO05D002726 5.4e-07 60.5 99 32.3
Peaxi162Scf00926g00006 Petunia axillaris HOM05D001439 ORTHO05D002726 5.4e-07 60.5 99 31.3
Cc02_g13850 Coffea canephora HOM05D001439 ORTHO05D002726 7.0e-07 60.1 78 39.7
DCAR_006144 Daucus carota HOM05D001312 ORTHO05D001832 9.2e-07 59.7 252 28.2
Migut.H01470 Erythranthe guttata HOM05D001439 ORTHO05D002726 1.2e-06 59.3 77 37.7
HanXRQChr04g0117141 Helianthus annuus HOM05D001439 ORTHO05D002726 1.6e-06 58.9 56 46.4
THA.LOC104812616 Tarenaya hassleriana HOM05D001439 ORTHO05D002726 1.6e-06 58.9 78 42.3
CSS0043150 Camellia sinensis var. sinensis HOM05D001439 ORTHO05D002726 2.0e-06 58.5 71 39.4
CBR_g33928 Chara braunii HOM05D001312 ORTHO05D001832 2.0e-06 58.5 228 28.5
Migut.M01107 Erythranthe guttata HOM05D001439 ORTHO05D002726 2.0e-06 58.5 56 46.4
unitig_27.g24975 Utricularia gibba HOM05D001439 ORTHO05D002726 2.0e-06 58.5 78 38.5
CAN.G209.1 Capsicum annuum HOM05D001439 ORTHO05D002726 2.7e-06 58.2 56 48.2
Dinv17354 Davidia involucrata HOM05D001439 ORTHO05D002726 2.7e-06 58.2 56 46.4
Hma1.2p1_0558F.1_g178470 Hydrangea macrophylla HOM05D001439 ORTHO05D002726 2.7e-06 58.2 56 48.2
DCAR_028055 Daucus carota HOM05D001439 ORTHO05D002726 3.5e-06 57.8 78 34.6
Pp3c7_5480 Physcomitrium patens HOM05D001312 ORTHO05D001832 3.5e-06 57.8 199 29.6
Solyc07g053610.3 Solanum lycopersicum HOM05D001439 ORTHO05D002726 3.5e-06 57.8 83 36.1
Sopen07g027560 Solanum pennellii HOM05D001439 ORTHO05D002726 3.5e-06 57.8 83 36.1
SGA_v2.0_scaffold22G09664 Striga asiatica HOM05D001439 ORTHO05D002726 3.5e-06 57.8 56 46.4
Actinidia26141 Actinidia chinensis HOM05D001439 ORTHO05D002726 4.5e-06 57.4 78 37.2
CAN.G529.57 Capsicum annuum HOM05D001439 ORTHO05D002726 4.5e-06 57.4 56 46.4
Actinidia07602 Actinidia chinensis HOM05D001439 ORTHO05D002726 5.9e-06 57.0 78 37.2
MELO3C007260.2 Cucumis melo HOM05D001439 ORTHO05D002726 7.8e-06 56.6 56 46.4
VMungo1080G0366 Vigna mungo HOM05D001312 ORTHO05D001832 7.8e-06 56.6 259 26.3


User provided reference genes

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