Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023035.2 Cucumis melo HOM05D008048 ORTHO05D010199 1.5e-156 556.2 289 100.0
CsaV3_2G012520 Cucumis sativus L. HOM05D008048 ORTHO05D010199 5.8e-153 544.3 289 97.6
Sed0019169 Sechium edule HOM05D008048 ORTHO05D010199 3.6e-131 471.9 289 84.8
Haze_11446 Corylus avellana HOM05D008048 ORTHO05D010199 2.1e-107 392.9 289 68.2
Cfa014771 Carpinus fangiana HOM05D008048 ORTHO05D010199 3.7e-107 392.1 289 68.5
QL06p020732 Quercus lobata HOM05D008048 ORTHO05D010199 9.3e-103 377.5 288 65.6
TAR362G0870 Trochodendron aralioides HOM05D008048 ORTHO05D010199 2.1e-102 376.3 289 64.0
Prupe.1G046300 Prunus persica HOM05D008048 ORTHO05D010199 4.3e-100 368.6 289 66.1
MD13G1219500 Malus domestica HOM05D008048 ORTHO05D010199 9.0e-98 360.9 290 64.5
COL.COLO4_15948 Corchorus olitorius HOM05D008048 ORTHO05D010199 3.8e-96 355.5 289 63.0
RcHm_v2.0_Chr4g0394961 Rosa chinensis HOM05D008048 ORTHO05D010199 6.5e-96 354.8 293 62.8
Hma1.2p1_0385F.1_g141480 Hydrangea macrophylla HOM05D008048 ORTHO05D010199 3.2e-95 352.4 289 61.2
MD16G1225000 Malus domestica HOM05D008048 ORTHO05D010199 7.9e-94 347.8 289 62.3
Nn1g02915 Nelumbo nucifera HOM05D008048 ORTHO05D010199 1.5e-92 343.6 289 59.2
Duzib151G0082 Durio zibethinus HOM05D008048 ORTHO05D010199 4.8e-91 338.6 289 60.9
Potri.008G170900 Populus trichocarpa HOM05D008048 ORTHO05D010199 4.8e-91 338.6 291 59.1
Sabra08G0130700 Salix brachista HOM05D008048 ORTHO05D010199 6.3e-91 338.2 291 58.1
Manes.15G044600 Manihot esculenta HOM05D008048 ORTHO05D010199 6.9e-90 334.7 290 56.9
Sabra10G0040500 Salix brachista HOM05D008048 ORTHO05D010199 7.7e-89 331.3 291 58.1
Potri.010G067000 Populus trichocarpa HOM05D008048 ORTHO05D010199 1.7e-88 330.1 291 57.4
MSTRG.4161 Avicennia marina HOM05D008048 ORTHO05D010199 2.9e-88 329.3 290 57.2
Dinv29814 Davidia involucrata HOM05D008048 ORTHO05D010199 5.0e-88 328.6 260 63.5
FAN17G0666 Fragaria x ananassa HOM05D008048 ORTHO05D010199 1.1e-87 327.4 294 59.9
Atru.chr4.1935 Acer truncatum HOM05D008048 ORTHO05D010199 2.5e-87 326.2 286 57.7
Aqoxy5G00167 Aquilegia oxysepala HOM05D008048 ORTHO05D010199 3.2e-87 325.9 292 57.5
Lsat_1_v5_gn_6_68700 Lactuca sativa HOM05D008048 ORTHO05D010199 3.2e-87 325.9 291 57.4
Lalb_Chr19g0128481 Lupinus albus HOM05D008048 ORTHO05D010199 1.2e-86 323.9 292 58.2
Sc25g0003600 Simmondsia chinensis HOM05D008048 ORTHO05D010199 4.6e-86 322.0 290 55.2
Ciclev10005562m.g Citrus clementina HOM05D008048 ORTHO05D010199 6.1e-86 321.6 289 56.4
Psat6g106440 Pisum sativum HOM05D008048 ORTHO05D010199 2.0e-84 316.6 275 58.2
Migut.G00487 Erythranthe guttata HOM05D008048 ORTHO05D010199 2.5e-84 316.2 290 57.2
Ah.04g155360 Amaranthus hybridus HOM05D008048 ORTHO05D010199 4.3e-84 315.5 289 54.3
TPR.G28751 Trifolium pratense HOM05D008048 ORTHO05D010199 5.7e-84 315.1 274 58.4
FAN22G2321 Fragaria x ananassa HOM05D008048 ORTHO05D010199 1.3e-83 313.9 294 57.5
FvH4_4g04390 Fragaria vesca HOM05D008048 ORTHO05D010199 2.2e-83 313.2 277 59.6
VMungo0720G0410 Vigna mungo HOM05D008048 ORTHO05D010199 4.8e-83 312.0 291 54.3
Actinidia20832 Actinidia chinensis HOM05D008048 ORTHO05D010199 6.3e-83 311.6 262 62.2
Medtr1g045060 Medicago truncatula HOM05D008048 ORTHO05D010199 1.4e-82 310.5 290 55.2
Phvul.007G271100 Phaseolus vulgaris HOM05D008048 ORTHO05D010199 4.1e-82 308.9 291 56.4
AUR62002183 Chenopodium quinoa HOM05D008048 ORTHO05D010199 1.5e-81 307.0 297 52.2
Gorai.002G026300 Gossypium raimondii HOM05D008048 ORTHO05D010199 2.6e-81 306.2 290 56.2
Gohir.D01G023415 Gossypium hirsutum HOM05D008048 ORTHO05D010199 1.3e-80 303.9 290 56.2
PGR004G1266 Punica granatum HOM05D008048 ORTHO05D010199 1.7e-80 303.5 295 56.9
Gohir.A01G025700 Gossypium hirsutum HOM05D008048 ORTHO05D010199 3.8e-80 302.4 290 55.5
PGSC0003DMG400017154 Solanum tuberosum HOM05D008048 ORTHO05D010199 5.0e-80 302.0 288 54.5
Peaxi162Scf00033g00292 Petunia axillaris HOM05D008048 ORTHO05D010199 1.4e-79 300.4 288 53.5
Lj6g0004811 Lotus japonicus HOM05D008048 ORTHO05D010199 5.5e-79 298.5 290 54.8
MBI07_g18713_MAGBIO Magnolia biondii HOM05D008048 ORTHO05D010199 2.3e-77 293.1 289 52.6
CAN.G220.87 Capsicum annuum HOM05D008048 ORTHO05D010199 3.9e-77 292.4 288 52.4
Thecc.04G262100 Theobroma cacao HOM05D008048 ORTHO05D010199 1.5e-76 290.4 224 64.3
TWI73G0695 Tripterygium wilfordii HOM05D008048 ORTHO05D010199 1.5e-76 290.4 297 54.2
Rhsim04G0173500 Rhododendron simsii HOM05D008048 ORTHO05D010199 5.7e-76 288.5 242 59.5
Sopen09g033500 Solanum pennellii HOM05D008048 ORTHO05D010199 9.7e-76 287.7 288 51.7
SalBow3G4414 Salvia bowleyana HOM05D008048 ORTHO05D010199 2.2e-72 276.6 288 51.7
CiPaw.02G108000 Carya illinoinensis HOM05D008048 ORTHO05D010199 4.7e-70 268.9 289 53.6
Nitab4.5_0002709g0050 Nicotiana tabacum HOM05D008048 ORTHO05D010199 1.8e-69 266.9 401 40.4
SGA_v2.0_scaffold67G22704 Striga asiatica HOM05D008048 ORTHO05D010199 2.0e-68 263.5 224 59.4
Oeu002289.1 Olea europaea HOM05D008048 ORTHO05D010199 4.5e-65 252.3 290 50.0
Glyma.20G086000 Glycine max HOM05D008048 ORTHO05D010199 1.2e-57 227.6 268 48.5
Cpa.g.sc44.13 Carica papaya HOM05D008048 ORTHO05D010199 5.5e-55 218.8 182 57.1
GSVIVG01027901001 Vitis vinifera HOM05D008048 ORTHO05D010199 1.5e-47 194.1 168 61.9
Lj6P622T54 Lonicera japonica HOM05D008048 ORTHO05D010199 1.3e-40 171.0 157 55.4
Solyc09g090560.2 Solanum lycopersicum HOM05D008048 ORTHO05D010199 1.4e-37 161.0 158 53.2
CAN.G220.88 Capsicum annuum HOM05D008048 ORTHO05D010199 5.8e-36 155.6 184 46.2
DCAR_027338 Daucus carota HOM05D008048 ORTHO05D010199 6.4e-35 152.1 187 43.9
FAN12G1007 Fragaria x ananassa HOM05D008048 ORTHO05D010199 3.9e-32 142.9 108 65.7
FAN12G3146 Fragaria x ananassa HOM05D008048 ORTHO05D010199 3.9e-32 142.9 108 65.7
FAN12G0723 Fragaria x ananassa HOM05D008048 ORTHO05D010199 6.6e-32 142.1 150 52.7
FAN12G2845 Fragaria x ananassa HOM05D008048 ORTHO05D010199 6.6e-32 142.1 150 52.7
ATR0736G121 Amborella trichopoda HOM05D008048 ORTHO05D010199 2.5e-31 140.2 173 43.4
Mapoly0103s0043 Marchantia polymorpha HOM05D007245 ORTHO05D009049 1.2e-28 131.3 272 33.5
SEGI_38415 Sequoiadendron giganteum HOM05D007245 ORTHO05D009049 2.7e-25 120.2 256 30.1
TAR365G0106 Trochodendron aralioides HOM05D008048 ORTHO05D010199 5.1e-24 115.9 110 58.2
EL10Ac3g04955 Beta vulgaris HOM05D008048 ORTHO05D010199 2.1e-22 110.5 115 47.8
Pp3c8_3270 Physcomitrium patens HOM05D007245 ORTHO05D009049 2.1e-22 110.5 265 29.4
TAR374G0050 Trochodendron aralioides HOM05D000179 ORTHO05D009049 2.1e-22 110.5 245 31.0
TAR629G1424 Trochodendron aralioides HOM05D007245 ORTHO05D009049 1.8e-21 107.5 259 29.3
Gorai.007G071400 Gossypium raimondii HOM05D007245 ORTHO05D009049 2.3e-21 107.1 257 30.0
Thecc.04G050800 Theobroma cacao HOM05D007245 ORTHO05D009049 4.0e-21 106.3 258 29.8
Gohir.A11G062100 Gossypium hirsutum HOM05D007245 ORTHO05D009049 5.2e-21 105.9 257 29.6
Gohir.D11G065900 Gossypium hirsutum HOM05D007245 ORTHO05D009049 5.2e-21 105.9 257 30.0
SMO329G0038 Selaginella moellendorffii HOM05D007245 ORTHO05D009049 5.2e-21 105.9 263 29.7
Hma1.2p1_0421F.1_g149920 Hydrangea macrophylla HOM05D007245 ORTHO05D009049 6.8e-21 105.5 281 30.2
Ca_11923_v3 Cicer arietinum L. HOM05D008048 ORTHO05D010199 8.9e-21 105.1 107 50.5
Nn3g16217 Nelumbo nucifera HOM05D007245 ORTHO05D009049 1.5e-20 104.4 260 28.8
Dinv25610 Davidia involucrata HOM05D007245 ORTHO05D009049 5.8e-20 102.4 258 30.6
PGSC0003DMG400030518 Solanum tuberosum HOM05D007245 ORTHO05D009049 7.6e-20 102.1 258 27.9
Dinv33262 Davidia involucrata HOM05D007245 ORTHO05D009049 9.9e-20 101.7 259 28.6
Cc09_g07550 Coffea canephora HOM05D007245 ORTHO05D009049 1.7e-19 100.9 261 30.3
Duzib147G1224 Durio zibethinus HOM05D007245 ORTHO05D009049 1.7e-19 100.9 258 29.8
Oeu050155.1 Olea europaea HOM05D007245 ORTHO05D009049 3.7e-19 99.8 260 28.8
ATR0582G351 Amborella trichopoda HOM05D007245 ORTHO05D009049 4.9e-19 99.4 256 29.3
Sopen05g004430 Solanum pennellii HOM05D007245 ORTHO05D009049 6.4e-19 99.0 252 27.4
Sed0008898 Sechium edule HOM05D007245 ORTHO05D009049 1.9e-18 97.4 257 29.2
Haze_14957 Corylus avellana HOM05D007245 ORTHO05D009049 2.4e-18 97.1 261 29.1
CiPaw.03G000500 Carya illinoinensis HOM05D007245 ORTHO05D009049 4.1e-18 96.3 248 29.0
CAN.G1489.19 Capsicum annuum HOM05D007245 ORTHO05D009049 5.4e-18 95.9 258 25.2
QL02p068579 Quercus lobata HOM05D007245 ORTHO05D009049 7.1e-18 95.5 260 28.8
Duzib187G0347 Durio zibethinus HOM05D007245 ORTHO05D009049 1.2e-17 94.7 258 29.1
Atru.chr6.2722 Acer truncatum HOM05D007245 ORTHO05D009049 1.6e-17 94.4 262 28.6
Aa31LG11G15470 Aethionema arabicum HOM05D007245 ORTHO05D009049 2.7e-17 93.6 256 28.9
SHI23073 Sapria himalayana HOM05D000105 ORTHO05D000023 2.7e-17 93.6 275 27.6
AagrBONN_evm.TU.Sc2ySwM_369.440 Anthoceros agrestis HOM05D007245 ORTHO05D009049 7.8e-17 92.0 281 28.5
PSO478G0086 Papaver somniferum HOM05D007245 ORTHO05D009049 7.8e-17 92.0 253 29.2
AL6G24530 Arabidopsis lyrata HOM05D007245 ORTHO05D009049 1.3e-16 91.3 267 24.7
Thhalv10014197m.g Eutrema salsugineum HOM05D007245 ORTHO05D009049 1.3e-16 91.3 263 25.9
Lj7P619T29 Lonicera japonica HOM05D007245 ORTHO05D009049 1.3e-16 91.3 259 27.4
AT5G13890 Arabidopsis thaliana HOM05D007245 ORTHO05D009049 1.7e-16 90.9 267 25.1
BcaC04g24245 Brassica carinata HOM05D007245 ORTHO05D009049 1.7e-16 90.9 264 26.9
Actinidia37711 Actinidia chinensis HOM05D007245 ORTHO05D009049 2.3e-16 90.5 253 28.9
PSO017G6414 Papaver somniferum HOM05D007245 ORTHO05D009049 2.3e-16 90.5 255 28.2
Sp6g30110 Schrenkiella parvula HOM05D007245 ORTHO05D009049 3.0e-16 90.1 263 26.6
THA.LOC104822428 Tarenaya hassleriana HOM05D007245 ORTHO05D009049 3.0e-16 90.1 263 27.0
BcaC04g19069 Brassica carinata HOM05D007245 ORTHO05D009049 3.9e-16 89.7 261 26.8
MBI11_g03703_MAGBIO Magnolia biondii HOM05D007245 ORTHO05D009049 3.9e-16 89.7 267 27.3
Manes.11G073800 Manihot esculenta HOM05D007245 ORTHO05D009049 5.1e-16 89.4 259 27.0
C09p63210 Brassica napus HOM05D007245 ORTHO05D009049 6.6e-16 89.0 261 26.8
BolC9t59157H Brassica oleracea HOM05D007245 ORTHO05D009049 6.6e-16 89.0 261 26.8
SalBow7G3959 Salvia bowleyana HOM05D007245 ORTHO05D009049 6.6e-16 89.0 261 26.4
MSTRG.15573 Avicennia marina HOM05D007245 ORTHO05D009049 8.6e-16 88.6 260 26.5
CARHR199540 Cardamine hirsuta HOM05D007245 ORTHO05D009049 8.6e-16 88.6 271 25.1
Aqoxy2G01225 Aquilegia oxysepala HOM05D007245 ORTHO05D009049 1.1e-15 88.2 266 26.3
Carub.0006s1208 Capsella rubella HOM05D007245 ORTHO05D009049 1.1e-15 88.2 266 24.1
Ciclev10016068m.g Citrus clementina HOM05D007245 ORTHO05D009049 1.5e-15 87.8 259 27.8
RcHm_v2.0_Chr2g0176701 Rosa chinensis HOM05D007245 ORTHO05D009049 1.5e-15 87.8 265 28.3
Cpa.g.sc70.41 Carica papaya HOM05D007245 ORTHO05D009049 2.5e-15 87.0 255 26.3
MD17G1004200 Malus domestica HOM05D007245 ORTHO05D009049 2.5e-15 87.0 268 26.1
Nitab4.5_0005411g0120 Nicotiana tabacum HOM05D007245 ORTHO05D009049 2.5e-15 87.0 256 26.2
Potri.002G237200 Populus trichocarpa HOM05D007245 ORTHO05D009049 2.5e-15 87.0 251 26.7
SGA_v2.0_scaffold47G17641 Striga asiatica HOM05D007245 ORTHO05D009049 2.5e-15 87.0 267 27.7
CSS0002235 Camellia sinensis var. sinensis HOM05D007245 ORTHO05D009049 3.3e-15 86.7 281 26.7
MD09G1001100 Malus domestica HOM05D007245 ORTHO05D009049 3.3e-15 86.7 267 26.2
FvH4_6g31080 Fragaria vesca HOM05D007245 ORTHO05D009049 4.3e-15 86.3 265 26.4
HanXRQChr09g0245251 Helianthus annuus HOM05D007245 ORTHO05D009049 5.6e-15 85.9 258 26.7
A10p24470 Brassica napus HOM05D007245 ORTHO05D009049 7.3e-15 85.5 263 26.2
CSS0018621 Camellia sinensis var. sinensis HOM05D007245 ORTHO05D009049 7.3e-15 85.5 285 26.3
Glyma.19G106200 Glycine max HOM05D007245 ORTHO05D009049 9.6e-15 85.1 257 26.8
Lsat_1_v5_gn_2_60460 Lactuca sativa HOM05D007245 ORTHO05D009049 9.6e-15 85.1 264 28.0
Oeu045577.1 Olea europaea HOM05D007245 ORTHO05D009049 9.6e-15 85.1 256 26.6
BraA10t44512Z Brassica rapa HOM05D007245 ORTHO05D009049 1.2e-14 84.7 263 25.9
Prupe.7G011800 Prunus persica HOM05D007245 ORTHO05D009049 1.2e-14 84.7 277 24.5
DCAR_000961 Daucus carota HOM05D007245 ORTHO05D009049 1.6e-14 84.3 264 28.0
MELO3C014761.2 Cucumis melo HOM05D007245 ORTHO05D009049 2.1e-14 84.0 280 25.4
CsaV3_3G020030 Cucumis sativus L. HOM05D007245 ORTHO05D009049 2.8e-14 83.6 281 25.3
Sed0013025 Sechium edule HOM05D007245 ORTHO05D009049 2.8e-14 83.6 262 26.7
vmacro18400 Vaccinium macrocarpon HOM05D007245 ORTHO05D009049 2.8e-14 83.6 265 26.0
FAN05G2831 Fragaria x ananassa HOM05D007245 ORTHO05D009049 3.6e-14 83.2 265 25.7
TWI32G1326 Tripterygium wilfordii HOM05D007245 ORTHO05D009049 3.6e-14 83.2 261 25.3
ECA238G1127 Erigeron canadensis HOM05D007245 ORTHO05D009049 4.7e-14 82.8 253 26.5
Nitab4.5_0005095g0010 Nicotiana tabacum HOM05D007245 ORTHO05D009049 4.7e-14 82.8 243 26.3
Peaxi162Scf00950g00032 Petunia axillaris HOM05D007245 ORTHO05D009049 6.2e-14 82.4 246 26.8
Pp3c4_3800 Physcomitrium patens HOM05D007245 ORTHO05D009049 6.2e-14 82.4 185 31.4
Pp3c12_14270 Physcomitrium patens HOM05D007245 ORTHO05D009049 8.1e-14 82.0 215 27.4
ClCG05G012490 Citrullus lanatus HOM05D007245 ORTHO05D009049 1.1e-13 81.6 280 24.6
Migut.K01486 Erythranthe guttata HOM05D007245 ORTHO05D009049 1.4e-13 81.3 253 26.1
CDE06G2711 Ceratophyllum demersum HOM05D007245 ORTHO05D009049 1.8e-13 80.9 257 26.1
PGR142G1730 Punica granatum HOM05D007245 ORTHO05D009049 1.8e-13 80.9 265 27.2
Rhsim08G0037800 Rhododendron simsii HOM05D007245 ORTHO05D009049 5.2e-13 79.3 260 26.9
Ah.03g136550 Amaranthus hybridus HOM05D001378 ORTHO05D001249 6.8e-13 79.0 244 27.5
unitig_0.g2407 Utricularia gibba HOM05D007245 ORTHO05D009049 1.5e-12 77.8 225 27.1
Lalb_Chr24g0402921 Lupinus albus HOM05D007245 ORTHO05D009049 1.3e-11 74.7 262 24.8
RcHm_v2.0_Chr2g0137761 Rosa chinensis HOM05D007245 ORTHO05D009049 1.7e-11 74.3 264 24.2
CDE02G4767 Ceratophyllum demersum HOM05D007245 ORTHO05D009049 4.9e-11 72.8 271 26.9
CANSAT64G0979 Cannabis sativa HOM05D007245 ORTHO05D009049 6.4e-11 72.4 273 24.9
Sabra02G0180800 Salix brachista HOM05D007245 ORTHO05D009049 8.4e-11 72.0 241 24.9
Phvul.001G099200 Phaseolus vulgaris HOM05D007245 ORTHO05D009049 1.1e-10 71.6 268 26.9
Pp3c10_19560 Physcomitrium patens HOM05D007245 ORTHO05D009049 1.1e-10 71.6 295 24.4
TPR.G31664 Trifolium pratense HOM05D007245 ORTHO05D009049 1.1e-10 71.6 268 25.4
Sc03g0005330 Simmondsia chinensis HOM05D007245 ORTHO05D009049 3.2e-10 70.1 255 25.5
Lj1g0022763 Lotus japonicus HOM05D007245 ORTHO05D009049 5.4e-10 69.3 264 24.2
COL.COLO4_13398 Corchorus olitorius HOM05D005263 ORTHO05D006891 1.6e-09 67.8 100 34.0
SGA_v2.0_scaffold34G13684 Striga asiatica HOM05D007245 ORTHO05D009049 2.1e-09 67.4 265 24.2
Manes.04G095000 Manihot esculenta HOM05D007245 ORTHO05D009049 2.3e-08 63.9 132 28.0
SMO329G0094 Selaginella moellendorffii HOM05D001193 ORTHO05D001016 3.3e-07 60.1 315 25.7
Ca_08230_v3 Cicer arietinum L. HOM05D007245 ORTHO05D009049 5.6e-07 59.3 110 30.9
VMungo1383G3535 Vigna mungo HOM05D007245 ORTHO05D009049 5.6e-07 59.3 257 24.1
Psat3g091920 Pisum sativum HOM05D007245 ORTHO05D009049 1.3e-06 58.2 175 25.1


User provided reference genes

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