Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022492.2 Cucumis melo HOM05D004324 ORTHO05D004840 1.4e-142 509.6 254 100.0
CsaV3_6G006290 Cucumis sativus L. HOM05D004324 ORTHO05D004840 1.4e-131 473.0 239 99.2
ClCG06G000480 Citrullus lanatus HOM05D004324 ORTHO05D004840 3.2e-131 471.9 239 97.9
Sed0016777 Sechium edule HOM05D004324 ORTHO05D004840 2.5e-128 462.2 239 96.2
THA.LOC104826515 Tarenaya hassleriana HOM05D004324 ORTHO05D004840 1.4e-118 429.9 239 89.1
Sp6g08900 Schrenkiella parvula HOM05D004324 ORTHO05D004840 1.8e-118 429.5 239 88.7
A03p28290 Brassica napus HOM05D004324 ORTHO05D004840 4.0e-118 428.3 239 88.7
Lalb_Chr12g0208141 Lupinus albus HOM05D004324 ORTHO05D004840 6.9e-118 427.6 239 87.0
Sc26g0001240 Simmondsia chinensis HOM05D004324 ORTHO05D004840 1.2e-117 426.8 239 87.9
C03p34220 Brassica napus HOM05D004324 ORTHO05D004840 1.5e-117 426.4 239 88.3
BraA03t12035Z Brassica rapa HOM05D004324 ORTHO05D004840 1.5e-117 426.4 239 88.3
Dinv32365 Davidia involucrata HOM05D004324 ORTHO05D004840 1.5e-117 426.4 239 87.9
Eucgr.E01445 Eucalyptus grandis HOM05D004324 ORTHO05D004840 2.6e-117 425.6 239 88.3
Thhalv10028793m.g Eutrema salsugineum HOM05D004324 ORTHO05D004840 2.6e-117 425.6 239 88.3
BolC3t15731H Brassica oleracea HOM05D004324 ORTHO05D004840 3.4e-117 425.2 239 87.9
Prupe.2G142300 Prunus persica HOM05D004324 ORTHO05D004840 3.4e-117 425.2 239 88.3
CANSAT56G0022 Cannabis sativa HOM05D004324 ORTHO05D004840 5.8e-117 424.5 239 87.9
Ciclev10021006m.g Citrus clementina HOM05D004324 ORTHO05D004840 5.8e-117 424.5 239 87.0
AT4G08900 Arabidopsis thaliana HOM05D004324 ORTHO05D004840 7.6e-117 424.1 239 87.9
BcaB01g02843 Brassica carinata HOM05D004324 ORTHO05D004840 7.6e-117 424.1 239 88.3
CARHR259850 Cardamine hirsuta HOM05D004324 ORTHO05D004840 1.0e-116 423.7 239 87.4
Cpa.g.sc145.18 Carica papaya HOM05D004324 ORTHO05D004840 1.0e-116 423.7 239 87.0
CiPaw.01G263900 Carya illinoinensis HOM05D004324 ORTHO05D004840 1.0e-116 423.7 239 87.4
BcaC01g04748 Brassica carinata HOM05D004324 ORTHO05D004840 1.3e-116 423.3 239 87.9
CAN.G388.33 Capsicum annuum HOM05D004324 ORTHO05D004840 1.3e-116 423.3 238 86.1
Cc02_g24110 Coffea canephora HOM05D004324 ORTHO05D004840 1.3e-116 423.3 239 87.0
Aa31LG9G14610 Aethionema arabicum HOM05D004324 ORTHO05D004840 1.7e-116 422.9 239 87.0
AL6G41660 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 1.7e-116 422.9 239 87.4
Carub.0006s2738 Capsella rubella HOM05D004324 ORTHO05D004840 1.7e-116 422.9 239 87.9
COL.COLO4_24610 Corchorus olitorius HOM05D004324 ORTHO05D004840 1.7e-116 422.9 239 87.0
FAN01G0081 Fragaria x ananassa HOM05D004324 ORTHO05D004840 1.7e-116 422.9 239 87.0
Os04g0106300 Oryza sativa ssp. japonica HOM05D004324 ORTHO05D004840 1.7e-116 422.9 239 87.0
PSO782G5694 Papaver somniferum HOM05D004324 ORTHO05D004840 2.2e-116 422.5 239 85.8
SalBow5G2819 Salvia bowleyana HOM05D004324 ORTHO05D004840 2.2e-116 422.5 239 85.8
SGA_v2.0_scaffold153G36989 Striga asiatica HOM05D004324 ORTHO05D004840 2.2e-116 422.5 239 85.8
MD07G1119200 Malus domestica HOM05D004324 ORTHO05D004840 2.9e-116 422.2 239 87.9
Thecc.08G173500 Theobroma cacao HOM05D004324 ORTHO05D004840 2.9e-116 422.2 239 86.6
Peaxi162Scf00013g03018 Petunia axillaris HOM05D004324 ORTHO05D004840 3.8e-116 421.8 239 85.4
RcHm_v2.0_Chr1g0349771 Rosa chinensis HOM05D004324 ORTHO05D004840 3.8e-116 421.8 239 87.0
Lsat_1_v5_gn_4_43080 Lactuca sativa HOM05D004324 ORTHO05D004840 4.9e-116 421.4 239 85.4
PGR042G0702 Punica granatum HOM05D004324 ORTHO05D004840 4.9e-116 421.4 239 87.0
FAN03G2758 Fragaria x ananassa HOM05D004324 ORTHO05D004840 6.5e-116 421.0 239 86.6
FAN06G1729 Fragaria x ananassa HOM05D004324 ORTHO05D004840 6.5e-116 421.0 239 86.6
FAN06G4220 Fragaria x ananassa HOM05D004324 ORTHO05D004840 6.5e-116 421.0 239 86.6
Manes.01G267300 Manihot esculenta HOM05D004324 ORTHO05D004840 6.5e-116 421.0 239 86.6
Nitab4.5_0000457g0100 Nicotiana tabacum HOM05D004324 ORTHO05D004840 8.4e-116 420.6 239 84.9
Duzib177G0253 Durio zibethinus HOM05D004324 ORTHO05D004840 1.4e-115 419.9 239 85.8
Duzib268G1605 Durio zibethinus HOM05D004324 ORTHO05D004840 1.4e-115 419.9 239 85.8
EL10Ac1g00868 Beta vulgaris HOM05D004324 ORTHO05D004840 1.9e-115 419.5 239 86.2
QL08p052832 Quercus lobata HOM05D004324 ORTHO05D004840 1.9e-115 419.5 238 87.0
Migut.B01616 Erythranthe guttata HOM05D004324 ORTHO05D004840 2.5e-115 419.1 239 84.9
Manes.05G047100 Manihot esculenta HOM05D004324 ORTHO05D004840 2.5e-115 419.1 239 87.0
ECA234G2725 Erigeron canadensis HOM05D004324 ORTHO05D004840 3.2e-115 418.7 239 84.9
Solyc01g091160.4 Solanum lycopersicum HOM05D004324 ORTHO05D004840 3.2e-115 418.7 239 84.9
Sopen01g036910 Solanum pennellii HOM05D004324 ORTHO05D004840 3.2e-115 418.7 239 84.9
Haze_16793 Corylus avellana HOM05D004324 ORTHO05D004840 4.2e-115 418.3 246 84.1
Gohir.D05G254400 Gossypium hirsutum HOM05D004324 ORTHO05D004840 4.2e-115 418.3 239 86.2
HanXRQChr16g0519961 Helianthus annuus HOM05D004324 ORTHO05D004840 4.2e-115 418.3 239 85.4
Potri.002G146200 Populus trichocarpa HOM05D004324 ORTHO05D004840 4.2e-115 418.3 239 86.6
Aqoxy7G00682 Aquilegia oxysepala HOM05D004324 ORTHO05D004840 5.5e-115 417.9 239 84.9
MSTRG.17174 Avicennia marina HOM05D004324 ORTHO05D004840 5.5e-115 417.9 239 84.1
Gorai.009G265900 Gossypium raimondii HOM05D004324 ORTHO05D004840 9.3e-115 417.2 239 85.8
PSO478G0881 Papaver somniferum HOM05D004324 ORTHO05D004840 9.3e-115 417.2 239 84.9
GSVIVG01027662001 Vitis vinifera HOM05D004324 ORTHO05D004840 9.3e-115 417.2 238 85.3
Nn1g01122 Nelumbo nucifera HOM05D004324 ORTHO05D004840 1.2e-114 416.8 239 85.8
Hma1.2p1_0442F.1_g153860 Hydrangea macrophylla HOM05D004324 ORTHO05D004840 2.1e-114 416.0 237 85.2
Lj3g0015076 Lotus japonicus HOM05D004324 ORTHO05D004840 2.1e-114 416.0 239 84.1
Nitab4.5_0010616g0050 Nicotiana tabacum HOM05D004324 ORTHO05D004840 2.1e-114 416.0 239 84.1
Ca_19938_v3 Cicer arietinum L. HOM05D004324 ORTHO05D004840 2.7e-114 415.6 239 85.4
Phvul.010G081600 Phaseolus vulgaris HOM05D004324 ORTHO05D004840 2.7e-114 415.6 239 84.9
Potri.014G067700 Populus trichocarpa HOM05D004324 ORTHO05D004840 3.5e-114 415.2 239 85.8
TWI59G0845 Tripterygium wilfordii HOM05D004324 ORTHO05D004840 3.5e-114 415.2 239 84.5
Sc26g0001250 Simmondsia chinensis HOM05D004324 ORTHO05D004840 4.6e-114 414.8 239 84.9
TPR.G7599 Trifolium pratense HOM05D004324 ORTHO05D004840 4.6e-114 414.8 239 84.9
TAR375G0703 Trochodendron aralioides HOM05D004324 ORTHO05D004840 4.6e-114 414.8 239 84.9
Atru.chr5.282 Acer truncatum HOM05D004324 ORTHO05D004840 7.9e-114 414.1 239 85.4
RcHm_v2.0_Chr1g0349751 Rosa chinensis HOM05D004324 ORTHO05D004840 7.9e-114 414.1 238 85.7
vmacro13417 Vaccinium macrocarpon HOM05D004324 ORTHO05D004840 1.0e-113 413.7 239 84.1
SEGI_09298 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 1.3e-113 413.3 239 84.9
HPP92_007375 Vanilla planifolia HOM05D004324 ORTHO05D004840 1.3e-113 413.3 239 83.7
CDE04G0300 Ceratophyllum demersum HOM05D004324 ORTHO05D004840 5.1e-113 411.4 238 83.6
Glyma.01G140200 Glycine max HOM05D004324 ORTHO05D004840 5.1e-113 411.4 239 84.1
SHI13535 Sapria himalayana HOM05D004324 ORTHO05D004840 5.1e-113 411.4 238 84.5
CSS0002473 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 6.7e-113 411.0 239 84.5
CSS0015452 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 1.1e-112 410.2 239 84.1
CSS0042374 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 1.1e-112 410.2 239 84.1
Glyma.17G131300 Glycine max HOM05D004324 ORTHO05D004840 1.1e-112 410.2 239 84.5
Psat0s3070g0160 Pisum sativum HOM05D004324 ORTHO05D004840 1.1e-112 410.2 239 82.8
Actinidia12245 Actinidia chinensis HOM05D004324 ORTHO05D004840 1.5e-112 409.8 239 84.9
AUR62013655 Chenopodium quinoa HOM05D004324 ORTHO05D004840 1.5e-112 409.8 239 83.3
Thecc.08G173700 Theobroma cacao HOM05D004324 ORTHO05D004840 2.5e-112 409.1 239 83.7
AT4G08870 Arabidopsis thaliana HOM05D004324 ORTHO05D004840 4.3e-112 408.3 239 83.7
Hund27368 Selenicereus undatus HOM05D004324 ORTHO05D004840 1.3e-111 406.8 228 85.5
Solyc01g091170.3 Solanum lycopersicum HOM05D004324 ORTHO05D004840 2.8e-111 405.6 239 83.7
Sopen01g036920 Solanum pennellii HOM05D004324 ORTHO05D004840 2.8e-111 405.6 239 83.7
Mapoly0082s0038 Marchantia polymorpha HOM05D004324 ORTHO05D004840 3.7e-111 405.2 240 82.5
SEGI_04392 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 3.7e-111 405.2 250 80.8
arahy.Tifrunner.gnm1.ann1.J6F3FE Arachis hypogaea HOM05D004324 ORTHO05D004840 6.3e-111 404.4 241 85.1
Oeu055504.4 Olea europaea HOM05D004324 ORTHO05D004840 6.3e-111 404.4 276 75.0
ATR0665G432 Amborella trichopoda HOM05D004324 ORTHO05D004840 1.1e-110 403.7 239 81.6
AUR62004190 Chenopodium quinoa HOM05D004324 ORTHO05D004840 1.1e-110 403.7 239 82.4
Rhsim07G0029000 Rhododendron simsii HOM05D004324 ORTHO05D004840 1.4e-110 403.3 262 77.5
unitig_899.g15094 Utricularia gibba HOM05D004324 ORTHO05D004840 1.4e-110 403.3 228 84.6
DCAR_008551 Daucus carota HOM05D004324 ORTHO05D004840 2.4e-110 402.5 228 85.1
arahy.Tifrunner.gnm1.ann1.2VF8XD Arachis hypogaea HOM05D004324 ORTHO05D004840 3.1e-110 402.1 240 85.0
Carub.0006s2736 Capsella rubella HOM05D004324 ORTHO05D004840 2.0e-109 399.4 239 81.2
SMO367G0287 Selaginella moellendorffii HOM05D004324 ORTHO05D004840 2.9e-108 395.6 240 80.0
Glyma.03G028000 Glycine max HOM05D004324 ORTHO05D004840 4.2e-107 391.7 239 78.2
Lj3g0002034 Lotus japonicus HOM05D004324 ORTHO05D004840 5.5e-107 391.3 239 78.2
Medtr4g024960 Medicago truncatula HOM05D004324 ORTHO05D004840 4.6e-106 388.3 239 78.7
Lj3g0012371 Lotus japonicus HOM05D004324 ORTHO05D004840 7.9e-106 387.5 238 79.0
Lj3g0008609 Lotus japonicus HOM05D004324 ORTHO05D004840 1.0e-105 387.1 239 78.7
TPR.G7597 Trifolium pratense HOM05D004324 ORTHO05D004840 1.8e-105 386.3 239 78.7
CiPaw.02G169300 Carya illinoinensis HOM05D004324 ORTHO05D004840 5.1e-105 384.8 228 81.6
Hma1.2p1_0375F.1_g138670 Hydrangea macrophylla HOM05D004324 ORTHO05D004840 2.8e-103 379.0 245 77.1
Pp3c5_2190 Physcomitrium patens HOM05D004324 ORTHO05D004840 4.8e-103 378.3 238 76.9
HanXRQChr16g0519941 Helianthus annuus HOM05D004324 ORTHO05D004840 8.2e-103 377.5 240 75.4
CBR_g50887 Chara braunii HOM05D004324 ORTHO05D004840 1.0e-100 370.5 238 76.5
Ah.05g174550 Amaranthus hybridus HOM05D004324 ORTHO05D004840 8.5e-100 367.5 239 74.1
Zm00001eb418690 Zea mays HOM05D004324 ORTHO05D004840 1.2e-98 363.6 208 86.5
Lj7A531T56 Lonicera japonica HOM05D004324 ORTHO05D004840 5.3e-94 348.2 239 74.5
Psat7g231720 Pisum sativum HOM05D004324 ORTHO05D004840 5.3e-94 348.2 241 68.9
AL6G42680 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 2.6e-88 329.3 194 82.5
Psat6g218040 Pisum sativum HOM05D004324 ORTHO05D004840 2.0e-85 319.7 272 57.7
COL.COLO4_24608 Corchorus olitorius HOM05D004324 ORTHO05D004840 2.2e-79 299.7 239 65.3
Sed0023731 Sechium edule HOM05D004324 ORTHO05D004840 2.2e-79 299.7 152 96.1
SGA_v2.0_scaffold11G05569 Striga asiatica HOM05D004324 ORTHO05D004840 7.0e-78 294.7 242 63.2
Psat6g218080 Pisum sativum HOM05D004324 ORTHO05D004840 6.8e-73 278.1 195 67.7
arahy.Tifrunner.gnm1.ann1.J17N2W Arachis hypogaea HOM05D004324 ORTHO05D004840 1.6e-69 266.9 232 62.1
Dinv43690 Davidia involucrata HOM05D004324 ORTHO05D004840 3.8e-68 262.3 239 60.7
Atru.chr5.284 Acer truncatum HOM05D004324 ORTHO05D004840 5.0e-68 261.9 152 84.9
Medtr0088s0100 Medicago truncatula HOM05D004324 ORTHO05D004840 4.1e-62 242.3 242 53.7
Gohir.A05G252466 Gossypium hirsutum HOM05D004324 ORTHO05D004840 2.8e-58 229.6 135 83.7
Medtr4g024940 Medicago truncatula HOM05D004324 ORTHO05D004840 4.7e-58 228.8 131 83.2
FvH4_7g11450 Fragaria vesca HOM05D004324 ORTHO05D004840 5.9e-53 211.8 119 86.6
MBI04_g35670_MAGBIO Magnolia biondii HOM05D004324 ORTHO05D004840 1.7e-52 210.3 120 83.3
Psat6g217960 Pisum sativum HOM05D004324 ORTHO05D004840 3.3e-51 206.1 155 64.5
AagrBONN_evm.TU.Sc2ySwM_368.1743 Anthoceros agrestis HOM05D004324 ORTHO05D004840 8.9e-49 198.0 117 80.3
Sc26g0001270 Simmondsia chinensis HOM05D004324 ORTHO05D004840 3.9e-44 182.6 110 81.8
Gohir.A05G252532 Gossypium hirsutum HOM05D004324 ORTHO05D004840 1.8e-41 173.7 93 88.2
CDE02G4314 Ceratophyllum demersum HOM05D004324 ORTHO05D004840 8.9e-41 171.4 148 63.5
arahy.Tifrunner.gnm1.ann1.V33WN8 Arachis hypogaea HOM05D004324 ORTHO05D004840 7.1e-38 161.8 87 93.1
MD02G1206600 Malus domestica HOM05D004324 ORTHO05D004840 6.4e-31 138.7 82 80.5
Duzib177G0443 Durio zibethinus HOM05D004324 ORTHO05D004840 8.4e-31 138.3 101 72.3
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 7.8e-29 131.7 87 73.6
CAN.G23.23 Capsicum annuum HOM05D004324 ORTHO05D004840 8.6e-28 128.3 78 75.6
Sc26g0001260 Simmondsia chinensis HOM05D004324 ORTHO05D004840 2.1e-21 107.1 127 52.0
Prupe.7G087800 Prunus persica HOM05D004324 ORTHO05D004840 4.8e-18 95.9 124 51.6
Pp3s30_709 Physcomitrium patens HOM05D004324 ORTHO05D004840 8.1e-18 95.1 234 29.1
Cfa025533 Carpinus fangiana HOM05D000146 ORTHO05D004840 6.9e-17 92.0 270 28.5
MCO07G634 Micromonas commoda HOM05D004324 ORTHO05D004840 3.8e-15 86.3 247 28.7
RcHm_v2.0_Chr1g0349761 Rosa chinensis HOM05D004324 ORTHO05D004840 1.1e-14 84.7 45 88.9
Ca_28979_v3 Cicer arietinum L. HOM05D004324 ORTHO05D004840 1.4e-14 84.3 188 33.0
Cfa023222 Carpinus fangiana HOM05D004324 ORTHO05D004840 1.2e-13 81.3 220 32.7
AL6G42730 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 1.0e-12 78.2 45 82.2
Cfa024978 Carpinus fangiana HOM05D004324 ORTHO05D034102 3.1e-09 66.6 245 25.3
Prupe.2G076400 Prunus persica HOM05D004324 ORTHO05D004840 9.0e-09 65.1 53 66.0
Aa31sc49G50 Aethionema arabicum HOM05D004324 ORTHO05D004840 2.6e-08 63.5 45 71.1
Actinidia02866 Actinidia chinensis HOM05D004324 ORTHO05D004840 1.3e-07 61.2 103 39.8
Medtr4g019730 Medicago truncatula HOM05D000814 ORTHO05D004840 3.8e-07 59.7 42 66.7


User provided reference genes

Program Settings