Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C021751.2 Cucumis melo HOM05D005429 ORTHO05D006697 4.1e-97 358.2 202 100.0
CsaV3_1G046300 Cucumis sativus L. HOM05D005429 ORTHO05D006697 2.9e-66 255.8 150 97.3
ClCG11G011870 Citrullus lanatus HOM05D005429 ORTHO05D006697 9.2e-65 250.8 150 95.3
Sed0018631 Sechium edule HOM05D005429 ORTHO05D006697 3.0e-55 219.2 157 84.7
Gohir.D02G066500 Gossypium hirsutum HOM05D005429 ORTHO05D006697 8.1e-53 211.1 144 86.1
Prupe.7G260300 Prunus persica HOM05D005429 ORTHO05D006697 4.0e-52 208.8 124 87.9
Gorai.005G075400 Gossypium raimondii HOM05D005429 ORTHO05D006697 6.8e-52 208.0 144 84.7
CiPaw.05G164700 Carya illinoinensis HOM05D005429 ORTHO05D006697 1.2e-51 207.2 123 87.0
Duzib116G0688 Durio zibethinus HOM05D005429 ORTHO05D006697 1.5e-51 206.8 144 84.7
Ciclev10022715m.g Citrus clementina HOM05D005429 ORTHO05D006697 2.0e-51 206.5 148 81.1
COL.COLO4_05834 Corchorus olitorius HOM05D005429 ORTHO05D006697 5.8e-51 204.9 122 86.1
Eucgr.C03287 Eucalyptus grandis HOM05D005429 ORTHO05D006697 7.6e-51 204.5 121 88.4
Gohir.A02G061000 Gossypium hirsutum HOM05D005429 ORTHO05D006697 9.9e-51 204.1 144 84.7
Eucgr.C04279 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.7e-50 203.4 121 88.4
Atru.chr3.2997 Acer truncatum HOM05D005429 ORTHO05D006697 2.2e-50 203.0 158 71.5
Actinidia23548 Actinidia chinensis HOM05D005429 ORTHO05D006697 2.2e-50 203.0 124 85.5
Eucgr.F00079 Eucalyptus grandis HOM05D005429 ORTHO05D006697 2.2e-50 203.0 121 87.6
PSO384G3609 Papaver somniferum HOM05D005429 ORTHO05D006697 2.2e-50 203.0 150 80.0
Thecc.05G251100 Theobroma cacao HOM05D005429 ORTHO05D006697 2.2e-50 203.0 147 81.6
GSVIVG01036692001 Vitis vinifera HOM05D005429 ORTHO05D006697 3.7e-50 202.2 123 85.4
Ca_03324_v3 Cicer arietinum L. HOM05D005429 ORTHO05D006697 1.1e-49 200.7 147 81.0
Rhsim03G0256400 Rhododendron simsii HOM05D005429 ORTHO05D006697 1.4e-49 200.3 123 85.4
Rhsim10G0195600 Rhododendron simsii HOM05D005429 ORTHO05D006697 1.4e-49 200.3 123 85.4
Thecc.08G200900 Theobroma cacao HOM05D005429 ORTHO05D006697 1.4e-49 200.3 147 81.0
arahy.Tifrunner.gnm1.ann1.WT0EG6 Arachis hypogaea HOM05D005429 ORTHO05D006697 1.9e-49 199.9 124 85.5
Cfa010706 Carpinus fangiana HOM05D005429 ORTHO05D006697 1.9e-49 199.9 123 83.7
TAR624G1317 Trochodendron aralioides HOM05D005429 ORTHO05D006697 1.9e-49 199.9 123 84.6
CSS0004524 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 3.2e-49 199.1 123 83.7
CSS0015948 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 3.2e-49 199.1 123 83.7
CSS0034504 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 3.2e-49 199.1 123 83.7
Nn4g23117 Nelumbo nucifera HOM05D005429 ORTHO05D006697 3.2e-49 199.1 123 84.6
Phvul.005G043700 Phaseolus vulgaris HOM05D005429 ORTHO05D006697 4.1e-49 198.7 124 83.9
Psat1g130720 Pisum sativum HOM05D005429 ORTHO05D006697 5.4e-49 198.4 147 80.3
VMungo1080G0054 Vigna mungo HOM05D005429 ORTHO05D006697 5.4e-49 198.4 124 83.1
Glyma.15G204300 Glycine max HOM05D005429 ORTHO05D006697 7.1e-49 198.0 153 78.4
LjContig00222g0019384 Lotus japonicus HOM05D005429 ORTHO05D006697 7.1e-49 198.0 124 84.7
vmacro06089 Vaccinium macrocarpon HOM05D005429 ORTHO05D006697 7.1e-49 198.0 120 86.7
Dinv44073 Davidia involucrata HOM05D005429 ORTHO05D006697 9.2e-49 197.6 123 85.4
arahy.Tifrunner.gnm1.ann1.9U3PF1 Arachis hypogaea HOM05D005429 ORTHO05D006697 1.2e-48 197.2 120 86.7
Lalb_Chr01g0015641 Lupinus albus HOM05D005429 ORTHO05D006697 1.2e-48 197.2 124 84.7
Medtr2g062860 Medicago truncatula HOM05D005429 ORTHO05D006697 1.2e-48 197.2 147 81.0
Potri.008G080700 Populus trichocarpa HOM05D005429 ORTHO05D006697 1.2e-48 197.2 123 82.9
Dinv42877 Davidia involucrata HOM05D005429 ORTHO05D006697 1.6e-48 196.8 123 84.6
Dinv43223 Davidia involucrata HOM05D005429 ORTHO05D006697 1.6e-48 196.8 123 84.6
PGR083G0776 Punica granatum HOM05D005429 ORTHO05D006697 2.1e-48 196.4 150 76.7
Cc02_g22920 Coffea canephora HOM05D005429 ORTHO05D006697 4.6e-48 195.3 153 78.4
PSO832G0230 Papaver somniferum HOM05D005429 ORTHO05D006697 7.8e-48 194.5 150 72.7
Glyma.08G160100 Glycine max HOM05D005429 ORTHO05D006697 1.0e-47 194.1 155 76.1
PSO210G6955 Papaver somniferum HOM05D005429 ORTHO05D006697 1.7e-47 193.4 150 74.0
PSO339G4006 Papaver somniferum HOM05D005429 ORTHO05D006697 1.7e-47 193.4 150 74.7
THA.LOC104812397 Tarenaya hassleriana HOM05D005429 ORTHO05D006697 2.3e-47 193.0 122 81.1
Aqoxy3G02759 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 5.1e-47 191.8 123 80.5
Nitab4.5_0009812g0020 Nicotiana tabacum HOM05D005429 ORTHO05D006697 5.1e-47 191.8 121 82.6
AT1G07950 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 8.6e-47 191.0 120 80.8
Cpa.g.sc16.3 Carica papaya HOM05D005429 ORTHO05D006697 8.6e-47 191.0 123 79.7
TWI18G1141 Tripterygium wilfordii HOM05D005429 ORTHO05D006697 8.6e-47 191.0 122 82.0
QL11p022585 Quercus lobata HOM05D005429 ORTHO05D006697 1.1e-46 190.7 120 82.5
Lj7A456T20 Lonicera japonica HOM05D005429 ORTHO05D006697 1.5e-46 190.3 121 81.8
Nitab4.5_0000548g0210 Nicotiana tabacum HOM05D005429 ORTHO05D006697 1.5e-46 190.3 121 81.8
Aa31LG7G970 Aethionema arabicum HOM05D005429 ORTHO05D006697 2.5e-46 189.5 120 79.2
Carub.0001s0730 Capsella rubella HOM05D005429 ORTHO05D006697 4.3e-46 188.7 122 77.9
Manes.03G077300 Manihot esculenta HOM05D005429 ORTHO05D006697 4.3e-46 188.7 124 79.0
Solyc03g083300.3 Solanum lycopersicum HOM05D005429 ORTHO05D006697 9.6e-46 187.6 145 77.2
Sopen03g023050 Solanum pennellii HOM05D005429 ORTHO05D006697 9.6e-46 187.6 145 77.2
Sp1g14580 Schrenkiella parvula HOM05D005429 ORTHO05D006697 1.2e-45 187.2 120 79.2
PGSC0003DMG400009083 Solanum tuberosum HOM05D005429 ORTHO05D006697 1.2e-45 187.2 145 77.2
AUR62006203 Chenopodium quinoa HOM05D005429 ORTHO05D006697 1.6e-45 186.8 120 80.0
MSTRG.26291 Avicennia marina HOM05D005429 ORTHO05D006697 2.1e-45 186.4 150 76.0
CANSAT56G3386 Cannabis sativa HOM05D005429 ORTHO05D006697 2.8e-45 186.0 121 79.3
Hund11041 Selenicereus undatus HOM05D005429 ORTHO05D006697 2.8e-45 186.0 156 73.7
CARHR016900 Cardamine hirsuta HOM05D005429 ORTHO05D006697 3.6e-45 185.7 120 77.5
AUR62030412 Chenopodium quinoa HOM05D005429 ORTHO05D006697 3.6e-45 185.7 120 80.0
Sabra08G0060000 Salix brachista HOM05D005429 ORTHO05D006697 3.6e-45 185.7 123 78.0
RcHm_v2.0_Chr5g0022991 Rosa chinensis HOM05D005429 ORTHO05D006697 6.2e-45 184.9 118 78.8
A06p12360 Brassica napus HOM05D005429 ORTHO05D006697 8.1e-45 184.5 120 76.7
BcaC05g25573 Brassica carinata HOM05D005429 ORTHO05D006697 1.1e-44 184.1 120 76.7
C05p14630 Brassica napus HOM05D005429 ORTHO05D006697 1.1e-44 184.1 120 76.7
BolC5t30184H Brassica oleracea HOM05D005429 ORTHO05D006697 1.1e-44 184.1 120 76.7
BraA06t24400Z Brassica rapa HOM05D005429 ORTHO05D006697 1.1e-44 184.1 120 76.7
CDE02G4404 Ceratophyllum demersum HOM05D005429 ORTHO05D006697 1.1e-44 184.1 162 67.3
AL1G18280 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 1.4e-44 183.7 120 77.5
BcaB02g06622 Brassica carinata HOM05D005429 ORTHO05D006697 1.4e-44 183.7 120 77.5
AT1G16430 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 1.8e-44 183.3 121 75.2
SGA_v2.0_scaffold147G36309 Striga asiatica HOM05D005429 ORTHO05D006697 1.8e-44 183.3 121 80.2
ECA238G3108 Erigeron canadensis HOM05D005429 ORTHO05D006697 2.4e-44 183.0 150 72.7
TPR.G39484 Trifolium pratense HOM05D005429 ORTHO05D006697 3.1e-44 182.6 146 74.7
AL1G28560 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 4.0e-44 182.2 120 75.0
HPP92_024623 Vanilla planifolia HOM05D005429 ORTHO05D006697 6.8e-44 181.4 146 66.4
Lsat_1_v5_gn_2_59100 Lactuca sativa HOM05D005429 ORTHO05D006697 8.9e-44 181.0 125 74.4
Sc16g0002320 Simmondsia chinensis HOM05D005429 ORTHO05D006697 8.9e-44 181.0 123 77.2
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 1.5e-43 180.3 121 80.2
EL10Ac5g12584 Beta vulgaris HOM05D005429 ORTHO05D006697 2.0e-43 179.9 123 75.6
Thhalv10008938m.g Eutrema salsugineum HOM05D005429 ORTHO05D006697 5.8e-43 178.3 129 72.9
HanXRQChr14g0437971 Helianthus annuus HOM05D005429 ORTHO05D006697 5.8e-43 178.3 124 72.6
FAN16G2737 Fragaria x ananassa HOM05D005429 ORTHO05D006697 9.9e-43 177.6 127 73.2
DCAR_027354 Daucus carota HOM05D005429 ORTHO05D006697 1.7e-42 176.8 123 76.4
FAN21G1331 Fragaria x ananassa HOM05D005429 ORTHO05D006697 1.7e-42 176.8 127 72.4
SGA_v2.0_scaffold19G08578 Striga asiatica HOM05D005429 ORTHO05D006697 2.2e-42 176.4 116 80.2
FAN25G2434 Fragaria x ananassa HOM05D005429 ORTHO05D006697 2.9e-42 176.0 127 72.4
Peaxi162Scf03254g00010 Petunia axillaris HOM05D005429 ORTHO05D006697 3.8e-42 175.6 121 79.3
FvH4_3g13800 Fragaria vesca HOM05D005429 ORTHO05D006697 4.9e-42 175.3 127 72.4
FAN11G0784 Fragaria x ananassa HOM05D005429 ORTHO05D006697 4.9e-42 175.3 127 72.4
Migut.N01785 Erythranthe guttata HOM05D005429 ORTHO05D006697 8.4e-42 174.5 124 75.0
Ah.04g163250 Amaranthus hybridus HOM05D005429 ORTHO05D006697 3.2e-41 172.6 126 70.6
Carub.0001s1617 Capsella rubella HOM05D005429 ORTHO05D006697 7.1e-41 171.4 120 73.3
SEGI_11251 Sequoiadendron giganteum HOM05D005429 ORTHO05D006697 2.7e-40 169.5 159 56.0
Haze_03266 Corylus avellana HOM05D005429 ORTHO05D006697 6.0e-40 168.3 202 51.5
MD02G1009700 Malus domestica HOM05D005429 ORTHO05D006697 6.0e-40 168.3 124 73.4
Peaxi162Scf00003g03942 Petunia axillaris HOM05D005429 ORTHO05D006697 1.0e-39 167.5 121 76.0
unitig_749.g13420 Utricularia gibba HOM05D005429 ORTHO05D006697 3.9e-39 165.6 117 71.8
QL02p100061 Quercus lobata HOM05D005429 ORTHO05D006697 5.6e-38 161.8 191 52.9
Hma1.2p1_0817F.1_g223090 Hydrangea macrophylla HOM05D005429 ORTHO05D006697 9.6e-38 161.0 123 74.8
Os08g0480500 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 6.2e-37 158.3 121 64.5
Peaxi162Scf00003g04025 Petunia axillaris HOM05D005429 ORTHO05D006697 1.4e-36 157.1 99 82.8
DCAR_014816 Daucus carota HOM05D005429 ORTHO05D006697 1.8e-36 156.8 142 60.6
ATR0019G018 Amborella trichopoda HOM05D005429 ORTHO05D006697 2.4e-36 156.4 121 67.8
Eucgr.C04273 Eucalyptus grandis HOM05D005429 ORTHO05D006697 9.0e-36 154.5 94 84.0
Haze_03271 Corylus avellana HOM05D005429 ORTHO05D001402 1.5e-35 153.7 99 79.8
Oeu051694.1 Olea europaea HOM05D005429 ORTHO05D006697 7.6e-35 151.4 101 78.2
QL04p071374 Quercus lobata HOM05D005429 ORTHO05D006697 7.6e-35 151.4 96 81.2
unitig_26.g9672 Utricularia gibba HOM05D005429 ORTHO05D006697 2.9e-34 149.4 117 65.8
Mapoly0161s0019 Marchantia polymorpha HOM05D005429 ORTHO05D006697 5.4e-33 145.2 120 62.5
Pp3c24_19620 Physcomitrium patens HOM05D005429 ORTHO05D006697 5.4e-33 145.2 143 52.4
Zm00001eb335330 Zea mays HOM05D005429 ORTHO05D006697 7.1e-33 144.8 121 62.0
Peaxi162Scf03393g00016 Petunia axillaris HOM05D005429 ORTHO05D006697 2.1e-32 143.3 90 83.3
Pp3c20_1390 Physcomitrium patens HOM05D005429 ORTHO05D006697 1.0e-31 141.0 119 59.7
Os01g0132700 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 3.3e-30 136.0 144 52.8
SMO141G0142 Selaginella moellendorffii HOM05D005429 ORTHO05D006697 5.6e-30 135.2 120 58.3
Aqoxy3G02314 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 1.8e-28 130.2 83 79.5
AagrBONN_evm.TU.Sc2ySwM_117.1673 Anthoceros agrestis HOM05D005429 ORTHO05D006697 3.1e-28 129.4 121 53.7
Eucgr.L02967 Eucalyptus grandis HOM05D005429 ORTHO05D006697 2.7e-24 116.3 108 61.1
Oeu050474.1 Olea europaea HOM05D005429 ORTHO05D006697 1.1e-20 104.4 78 69.2
Eucgr.C04269 Eucalyptus grandis HOM05D005429 ORTHO05D006697 5.3e-20 102.1 95 63.2
CAN.G1618.6 Capsicum annuum HOM05D005429 ORTHO05D006697 9.0e-20 101.3 91 58.2
CAN.G584.55 Capsicum annuum HOM05D005429 ORTHO05D006697 9.0e-20 101.3 91 58.2
Peaxi162Scf03393g00018 Petunia axillaris HOM05D005429 ORTHO05D006697 3.8e-18 95.9 64 75.0
SGA_v2.0_scaffold19G08613 Striga asiatica HOM05D005429 ORTHO05D006697 1.2e-11 74.3 70 64.3
SGA_v2.0_scaffold19G08607 Striga asiatica HOM05D005429 ORTHO05D006697 1.5e-11 73.9 83 57.8
SGA_v2.0_scaffold711G53500 Striga asiatica HOM05D005429 ORTHO05D006697 1.5e-11 73.9 83 57.8
Zm00001eb228470 Zea mays HOM05D005429 ORTHO05D006697 2.2e-10 70.1 49 63.3
Peaxi162Scf00003g04026 Petunia axillaris HOM05D000011 ORTHO05D011267 1.6e-08 63.9 46 67.4


User provided reference genes

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