Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C021546.2 Cucumis melo HOM05D001104 ORTHO05D006624 2.1e-252 875.2 426 100.0
CsaV3_5G027380 Cucumis sativus L. HOM05D001104 ORTHO05D006624 3.1e-248 861.3 426 97.9
Sed0005946 Sechium edule HOM05D001104 ORTHO05D006624 8.8e-235 816.6 426 91.8
Cpa.g.sc215.8 Carica papaya HOM05D001104 ORTHO05D006624 2.9e-225 785.0 426 85.9
ClCG09G018970 Citrullus lanatus HOM05D001104 ORTHO05D006624 6.6e-222 773.9 478 81.0
Atru.chr6.2305 Acer truncatum HOM05D001104 ORTHO05D006624 3.3e-221 771.5 426 84.5
TWI12G0063 Tripterygium wilfordii HOM05D001104 ORTHO05D006624 1.2e-218 763.1 426 84.0
Dinv35069 Davidia involucrata HOM05D001104 ORTHO05D006624 9.8e-218 760.0 428 83.6
Prupe.3G285400 Prunus persica HOM05D001104 ORTHO05D006624 8.3e-217 756.9 435 82.3
Dinv33487 Davidia involucrata HOM05D001104 ORTHO05D006624 1.4e-216 756.1 426 83.8
Thecc.04G010000 Theobroma cacao HOM05D001104 ORTHO05D006624 7.0e-216 753.8 426 82.4
Haze_14675 Corylus avellana HOM05D001104 ORTHO05D006624 3.5e-215 751.5 424 84.4
Potri.001G348700 Populus trichocarpa HOM05D001104 ORTHO05D006624 6.0e-215 750.7 426 82.9
CiPaw.03G038600 Carya illinoinensis HOM05D001104 ORTHO05D006624 7.8e-215 750.4 426 83.1
Ciclev10015353m.g Citrus clementina HOM05D001104 ORTHO05D006624 5.0e-214 747.7 426 82.4
CSS0039746 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 2.5e-213 745.3 428 82.2
Hma1.2p1_0993F.1_g245480 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 4.7e-212 741.1 428 82.7
MD17G1034200 Malus domestica HOM05D001104 ORTHO05D006624 6.2e-212 740.7 447 78.3
Duzib147G0036 Durio zibethinus HOM05D001104 ORTHO05D006624 1.1e-211 740.0 425 81.4
CSS0024274 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 3.1e-211 738.4 432 81.5
Rhsim10G0021500 Rhododendron simsii HOM05D001104 ORTHO05D006624 4.4e-210 734.6 428 81.1
MSTRG.15512 Avicennia marina HOM05D001104 ORTHO05D006624 9.9e-210 733.4 428 80.1
Oeu062922.1 Olea europaea HOM05D001104 ORTHO05D006624 1.3e-209 733.0 428 80.6
TAR374G1405 Trochodendron aralioides HOM05D001104 ORTHO05D006624 1.7e-209 732.6 426 80.8
Actinidia06020 Actinidia chinensis HOM05D001104 ORTHO05D006624 8.3e-209 730.3 426 81.9
Cc07_g02180 Coffea canephora HOM05D001104 ORTHO05D006624 1.2e-207 726.5 428 80.8
Actinidia35743 Actinidia chinensis HOM05D001104 ORTHO05D006624 1.0e-206 723.4 427 80.3
Migut.H00115 Erythranthe guttata HOM05D001104 ORTHO05D006624 3.0e-206 721.8 429 80.2
RcHm_v2.0_Chr2g0171701 Rosa chinensis HOM05D001104 ORTHO05D006624 3.9e-206 721.5 439 78.1
Nitab4.5_0001709g0040 Nicotiana tabacum HOM05D001104 ORTHO05D006624 5.1e-206 721.1 419 80.4
Solyc02g067740.4 Solanum lycopersicum HOM05D001104 ORTHO05D006624 1.2e-204 716.5 419 79.2
Gorai.001G262300 Gossypium raimondii HOM05D001104 ORTHO05D006624 2.4e-203 712.2 426 77.5
Sopen02g016860 Solanum pennellii HOM05D001104 ORTHO05D006624 2.4e-203 712.2 419 78.8
CAN.G973.9 Capsicum annuum HOM05D001104 ORTHO05D006624 3.1e-203 711.8 419 79.7
Eucgr.I01793 Eucalyptus grandis HOM05D001104 ORTHO05D006624 5.2e-203 711.1 429 78.3
PGSC0003DMG400006955 Solanum tuberosum HOM05D001104 ORTHO05D006624 1.2e-202 709.9 419 79.0
Gohir.A07G220700 Gossypium hirsutum HOM05D001104 ORTHO05D006624 1.5e-202 709.5 426 77.0
COL.COLO4_28978 Corchorus olitorius HOM05D001104 ORTHO05D006624 3.4e-202 708.4 450 76.0
GSVIVG01032469001 Vitis vinifera HOM05D001104 ORTHO05D006624 4.4e-202 708.0 426 78.2
FAN05G2035 Fragaria x ananassa HOM05D001104 ORTHO05D006624 7.6e-202 707.2 440 76.8
FAN14G0697 Fragaria x ananassa HOM05D001104 ORTHO05D006624 7.6e-202 707.2 440 76.6
FvH4_6g50760 Fragaria vesca HOM05D001104 ORTHO05D006624 9.9e-202 706.8 440 76.6
CANSAT64G0855 Cannabis sativa HOM05D001104 ORTHO05D006624 5.4e-200 701.0 426 78.2
QL02p076349 Quercus lobata HOM05D001104 ORTHO05D006624 1.2e-199 699.9 426 78.6
MD09G1032600 Malus domestica HOM05D001104 ORTHO05D006624 5.1e-198 694.5 448 75.7
arahy.Tifrunner.gnm1.ann1.PA6DSG Arachis hypogaea HOM05D001104 ORTHO05D006624 7.3e-197 690.6 428 76.4
vmacro05831 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 7.3e-197 690.6 436 76.6
Nn4g22776 Nelumbo nucifera HOM05D001104 ORTHO05D006624 2.1e-196 689.1 427 74.9
Cfa007422 Carpinus fangiana HOM05D001104 ORTHO05D006624 2.8e-196 688.7 390 84.9
SalBow1G5303 Salvia bowleyana HOM05D001104 ORTHO05D006624 4.0e-195 684.9 430 75.6
Medtr6g007040 Medicago truncatula HOM05D001104 ORTHO05D006624 2.6e-194 682.2 419 77.6
Lj7C592G4 Lonicera japonica HOM05D001104 ORTHO05D006624 5.8e-194 681.0 428 77.1
HanXRQChr14g0450311 Helianthus annuus HOM05D001104 ORTHO05D006624 6.4e-193 677.6 428 74.5
ECA232G2826 Erigeron canadensis HOM05D001104 ORTHO05D006624 1.4e-192 676.4 418 75.1
Glyma.19G007900 Glycine max HOM05D001104 ORTHO05D006624 1.4e-192 676.4 430 76.7
arahy.Tifrunner.gnm1.ann1.S5BZSG Arachis hypogaea HOM05D001104 ORTHO05D006624 5.4e-192 674.5 448 72.8
Phvul.004G013700 Phaseolus vulgaris HOM05D001104 ORTHO05D006624 1.6e-191 672.9 430 75.6
ECA238G2799 Erigeron canadensis HOM05D001104 ORTHO05D006624 1.3e-190 669.8 425 73.4
Peaxi162Scf00933g00005 Petunia axillaris HOM05D001104 ORTHO05D006624 3.9e-190 668.3 394 78.9
VMungo0464G0407 Vigna mungo HOM05D001104 ORTHO05D006624 5.1e-190 667.9 429 74.6
PSO478G3469 Papaver somniferum HOM05D001104 ORTHO05D006624 3.3e-189 665.2 430 74.9
Aqoxy3G01030 Aquilegia oxysepala HOM05D001104 ORTHO05D006624 9.6e-189 663.7 425 74.4
Hma1.2p1_3249F.1_g334430 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 1.6e-188 662.9 396 79.8
THA.LOC104825337 Tarenaya hassleriana HOM05D001104 ORTHO05D006624 4.8e-188 661.4 429 73.9
HanXRQChr09g0266171 Helianthus annuus HOM05D001104 ORTHO05D006624 3.1e-187 658.7 414 74.2
Sp2g16980 Schrenkiella parvula HOM05D001104 ORTHO05D006624 4.0e-187 658.3 428 74.5
PGR142G0881 Punica granatum HOM05D001104 ORTHO05D006624 1.2e-186 656.8 423 73.8
BcaC06g30950 Brassica carinata HOM05D001104 ORTHO05D006624 9.9e-186 653.7 429 73.2
DCAR_011201 Daucus carota HOM05D001104 ORTHO05D006624 1.4e-184 649.8 397 78.1
BcaC06g33770 Brassica carinata HOM05D001104 ORTHO05D006624 2.4e-184 649.0 428 73.1
C07p37130 Brassica napus HOM05D001104 ORTHO05D006624 2.4e-184 649.0 428 73.1
Gohir.D07G227400 Gossypium hirsutum HOM05D001104 ORTHO05D006624 5.4e-184 647.9 396 76.3
Lalb_Chr06g0176011 Lupinus albus HOM05D001104 ORTHO05D006624 9.3e-184 647.1 435 71.3
Ca_04192_v3 Cicer arietinum L. HOM05D001104 ORTHO05D006624 7.9e-183 644.0 427 73.5
Thhalv10004293m.g Eutrema salsugineum HOM05D001104 ORTHO05D006624 3.9e-182 641.7 427 73.8
Lj2g0012499 Lotus japonicus HOM05D001104 ORTHO05D006624 8.7e-182 640.6 430 72.1
FAN02G3192 Fragaria x ananassa HOM05D001104 ORTHO05D006624 2.4e-179 632.5 495 64.8
AL5G17430 Arabidopsis lyrata HOM05D001104 ORTHO05D006624 4.5e-178 628.2 428 71.3
Carub.0005s0650 Capsella rubella HOM05D001104 ORTHO05D006624 2.2e-177 625.9 427 71.2
PSO017G6424 Papaver somniferum HOM05D001104 ORTHO05D006624 6.4e-177 624.4 430 70.9
AT3G27930 Arabidopsis thaliana HOM05D001104 ORTHO05D006624 7.1e-176 620.9 428 71.0
DCAR_015045 Daucus carota HOM05D001104 ORTHO05D006624 1.2e-175 620.2 475 65.9
Lsat_1_v5_gn_4_182480 Lactuca sativa HOM05D001104 ORTHO05D006624 7.9e-175 617.5 422 70.6
MBI16_g05636_MAGBIO Magnolia biondii HOM05D001104 ORTHO05D006624 1.8e-174 616.3 396 72.5
CARHR149500 Cardamine hirsuta HOM05D001104 ORTHO05D006624 3.9e-174 615.1 432 69.2
SGA_v2.0_scaffold135G34875 Striga asiatica HOM05D001104 ORTHO05D006624 8.2e-172 607.4 372 78.5
EL10Ac4g08579 Beta vulgaris HOM05D001104 ORTHO05D006624 4.5e-170 601.7 426 67.8
ATR0730G148 Amborella trichopoda HOM05D001104 ORTHO05D006624 3.5e-167 592.0 424 66.0
Sc03g0007930 Simmondsia chinensis HOM05D001104 ORTHO05D006624 1.5e-165 586.6 345 79.4
Manes.17G117000 Manihot esculenta HOM05D001104 ORTHO05D006624 7.4e-165 584.3 426 68.3
CSS0016338 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 6.3e-164 581.3 458 66.8
Aa31LG2G4840 Aethionema arabicum HOM05D001104 ORTHO05D006285 2.0e-162 576.2 373 74.3
Os05g0577800 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 1.8e-158 563.1 423 62.4
CDE06G1183 Ceratophyllum demersum HOM05D001104 ORTHO05D006624 2.4e-155 552.7 426 62.4
Oeu043054.1 Olea europaea HOM05D001104 ORTHO05D006285 3.9e-150 535.4 387 68.5
vmacro18250 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 1.3e-148 530.4 427 63.2
Nitab4.5_0001125g0070 Nicotiana tabacum HOM05D001104 ORTHO05D006624 1.7e-148 530.0 424 63.4
CSS0012459 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 4.7e-143 511.9 437 62.2
HPP92_024321 Vanilla planifolia HOM05D001104 ORTHO05D006285 5.2e-142 508.4 358 66.5
BcaC03g17495 Brassica carinata HOM05D001104 ORTHO05D006624 5.7e-141 505.0 410 63.4
Psat1g057160 Pisum sativum HOM05D001104 ORTHO05D006624 2.6e-138 496.1 304 78.0
unitig_899.g15491 Utricularia gibba HOM05D000928 ORTHO05D001186 5.7e-133 478.4 403 58.8
Os05g0577900 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 2.6e-125 453.0 424 52.8
AUR62029365 Chenopodium quinoa HOM05D001104 ORTHO05D006624 4.8e-124 448.7 428 53.7
A06p40770 Brassica napus HOM05D001104 ORTHO05D006624 3.5e-122 442.6 289 74.0
BolC7t44224H Brassica oleracea HOM05D001104 ORTHO05D006624 1.3e-121 440.7 288 73.6
BraA06t26998Z Brassica rapa HOM05D001104 ORTHO05D006624 1.7e-121 440.3 288 74.0
C02p54520 Brassica napus HOM05D001104 ORTHO05D006624 2.3e-118 429.9 437 54.0
Rhsim08G0054100 Rhododendron simsii HOM05D001104 ORTHO05D006285 2.0e-117 426.8 425 55.1
AUR62043218 Chenopodium quinoa HOM05D001104 ORTHO05D006624 2.2e-116 423.3 426 52.6
C02p54570 Brassica napus HOM05D001104 ORTHO05D006624 5.4e-115 418.7 457 51.6
AagrBONN_evm.TU.Sc2ySwM_340.221 Anthoceros agrestis HOM05D001104 ORTHO05D006624 1.9e-112 410.2 437 47.4
Pp3c25_9610 Physcomitrium patens HOM05D001104 ORTHO05D006624 2.5e-104 383.3 433 46.2
BolC2t11515H Brassica oleracea HOM05D001104 ORTHO05D006624 3.4e-101 372.9 637 38.6
HanXRQChr06g0175561 Helianthus annuus HOM05D001104 ORTHO05D006624 8.1e-95 351.7 292 60.6
Zm00001eb344500 Zea mays HOM05D001104 ORTHO05D006624 8.9e-94 348.2 271 61.3
TPR.G2265 Trifolium pratense HOM05D001104 ORTHO05D006624 2.3e-89 333.6 198 77.8
A02p35680 Brassica napus HOM05D001104 ORTHO05D006624 4.0e-86 322.8 691 33.4
Hund10304 Selenicereus undatus HOM05D001104 ORTHO05D006624 4.0e-86 322.8 267 61.0
BraA02t08571Z Brassica rapa HOM05D001104 ORTHO05D006624 2.8e-63 246.9 541 33.5
BolC2t11520H Brassica oleracea HOM05D001104 ORTHO05D006624 3.4e-61 240.0 333 44.7
Psat0s3401g0080 Pisum sativum HOM05D001104 ORTHO05D006624 3.5e-58 229.9 147 76.9
Cfa008567 Carpinus fangiana HOM05D001104 ORTHO05D006624 4.3e-56 223.0 161 69.6
A06p40780 Brassica napus HOM05D001104 ORTHO05D006624 1.3e-47 194.9 122 73.0
BraA02t08570Z Brassica rapa HOM05D001104 ORTHO05D006624 1.1e-43 181.8 107 77.6
SEGI_13753 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 2.2e-39 167.5 147 53.7
Oeu043225.1 Olea europaea HOM05D003428 ORTHO05D006624 9.1e-38 162.2 290 37.2
Oeu051906.1 Olea europaea HOM05D003428 ORTHO05D006624 2.6e-37 160.6 290 37.2
Glyma.05G007402 Glycine max HOM05D001104 ORTHO05D006624 6.1e-34 149.4 129 62.8
Psat1g219520 Pisum sativum HOM05D001104 ORTHO05D006624 1.8e-33 147.9 92 79.3
Thecc.04G111800 Theobroma cacao HOM05D001104 ORTHO05D006624 1.4e-25 121.7 85 65.9
Actinidia36089 Actinidia chinensis HOM05D001104 ORTHO05D006624 1.8e-25 121.3 76 76.3
Cfa008566 Carpinus fangiana HOM05D001104 ORTHO05D006624 7.7e-21 105.9 58 84.5
BcaB07g30139 Brassica carinata HOM05D001104 ORTHO05D006624 2.1e-18 97.8 67 74.6
HanXRQChr16g0517041 Helianthus annuus HOM05D001104 ORTHO05D006624 1.8e-17 94.7 79 54.4
Cre08.g358552 Chlamydomonas reinhardtii HOM05D001104 ORTHO05D006624 1.3e-15 88.6 463 24.0
SEGI_37884 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 2.4e-14 84.3 91 41.8
Sopen07g006450 Solanum pennellii HOM05D001104 ORTHO05D006624 6.8e-09 66.2 43 62.8
TPR.G18830 Trifolium pratense HOM05D001104 ORTHO05D006624 1.2e-08 65.5 44 70.5
SEGI_12261 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 5.7e-08 63.2 57 54.4


User provided reference genes

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