Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C021518.2 Cucumis melo HOM05D007469 ORTHO05D003360 9.0e-134 480.7 333 100.0
CsaV3_5G037380 Cucumis sativus L. HOM05D007469 ORTHO05D003360 2.0e-104 383.3 333 87.4
Sed0015996 Sechium edule HOM05D007469 ORTHO05D003360 1.6e-85 320.5 339 78.8
ClCG00G005290 Citrullus lanatus HOM05D007469 ORTHO05D003360 1.7e-84 317.0 329 78.4
ClCG09G018690 Citrullus lanatus HOM05D007469 ORTHO05D003360 1.7e-84 317.0 329 78.4
ClCG09G018760 Citrullus lanatus HOM05D007469 ORTHO05D003360 1.7e-84 317.0 329 78.4
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 1.7e-52 210.7 319 65.2
Manes.15G180348 Manihot esculenta HOM05D007469 ORTHO05D003360 1.6e-50 204.1 309 65.4
Atru.chr8.2427 Acer truncatum HOM05D007469 ORTHO05D003360 1.8e-49 200.7 318 65.7
Sabra16G0184600 Salix brachista HOM05D007469 ORTHO05D003360 4.4e-48 196.1 290 68.6
Haze_14632 Corylus avellana HOM05D007469 ORTHO05D003360 3.7e-47 193.0 327 61.8
Dinv35031 Davidia involucrata HOM05D000028 ORTHO05D000390 6.4e-47 192.2 228 51.8
CiPaw.03G035300 Carya illinoinensis HOM05D007469 ORTHO05D003360 8.3e-47 191.8 266 72.2
Ciclev10013529m.g Citrus clementina HOM05D007469 ORTHO05D003360 1.7e-44 184.1 328 59.1
Cfa007462 Carpinus fangiana HOM05D007469 ORTHO05D003360 3.3e-43 179.9 327 59.6
Thecc.04G004300 Theobroma cacao HOM05D007469 ORTHO05D003360 9.6e-43 178.3 274 70.1
QL02p077481 Quercus lobata HOM05D007469 ORTHO05D003360 6.2e-42 175.6 328 59.1
BcaB06g27455 Brassica carinata HOM05D007469 ORTHO05D003360 6.4e-39 165.6 293 60.4
Prupe.3G132600 Prunus persica HOM05D007469 ORTHO05D003360 6.4e-39 165.6 308 62.3
BraA04t16968Z Brassica rapa HOM05D007469 ORTHO05D003360 9.3e-38 161.8 314 56.4
Dinv33523 Davidia involucrata HOM05D007469 ORTHO05D003360 1.2e-37 161.4 295 63.4
THA.LOC104805414 Tarenaya hassleriana HOM05D007469 ORTHO05D003360 1.2e-37 161.4 282 64.2
AL7G49850 Arabidopsis lyrata HOM05D007469 ORTHO05D003360 3.9e-36 156.4 274 59.9
Duzib264G1016 Durio zibethinus HOM05D007469 ORTHO05D003360 3.9e-36 156.4 266 68.0
A04p13090 Brassica napus HOM05D007469 ORTHO05D003360 8.7e-36 155.2 333 53.8
GSVIVG01032525001 Vitis vinifera HOM05D007469 ORTHO05D003360 1.5e-35 154.5 235 73.2
TAR371G0800 Trochodendron aralioides HOM05D007469 ORTHO05D003360 9.6e-35 151.8 340 57.1
AT5G40160 Arabidopsis thaliana HOM05D007469 ORTHO05D003360 1.3e-34 151.4 276 59.1
Cc02_g31090 Coffea canephora HOM05D007469 ORTHO05D003360 2.8e-34 150.2 270 65.2
RcHm_v2.0_Chr7g0226491 Rosa chinensis HOM05D007469 ORTHO05D003360 4.8e-34 149.4 286 62.2
Hund20037 Selenicereus undatus HOM05D007469 ORTHO05D009499 4.8e-34 149.4 172 50.0
Carub.0007s3552 Capsella rubella HOM05D007469 ORTHO05D003360 1.1e-33 148.3 274 58.8
Gorai.001G259900 Gossypium raimondii HOM05D007469 ORTHO05D003360 1.1e-33 148.3 271 64.6
Sc18g0006210 Simmondsia chinensis HOM05D007469 ORTHO05D003360 1.1e-33 148.3 255 39.2
CANSAT64G2834 Cannabis sativa HOM05D007469 ORTHO05D003360 1.4e-33 147.9 328 54.6
TPR.G666 Trifolium pratense HOM05D007469 ORTHO05D003360 1.4e-33 147.9 270 67.4
Hma1.2p1_0697F.1_g204960 Hydrangea macrophylla HOM05D007469 ORTHO05D003360 1.8e-33 147.5 332 55.1
Potri.001G295200 Populus trichocarpa HOM05D007469 ORTHO05D003360 1.8e-33 147.5 290 62.1
C04p46840 Brassica napus HOM05D007469 ORTHO05D003360 2.4e-33 147.1 332 53.6
BolC4t26272H Brassica oleracea HOM05D007469 ORTHO05D003360 2.4e-33 147.1 332 53.6
MSTRG.15502 Avicennia marina HOM05D007469 ORTHO05D003360 3.1e-33 146.7 340 54.1
Oeu047333.1 Olea europaea HOM05D007469 ORTHO05D003360 4.0e-33 146.4 267 59.6
arahy.Tifrunner.gnm1.ann1.5026CX Arachis hypogaea HOM05D007469 ORTHO05D003360 6.9e-33 145.6 264 58.3
CARHR261930 Cardamine hirsuta HOM05D007469 ORTHO05D003360 6.9e-33 145.6 274 58.4
Thhalv10027842m.g Eutrema salsugineum HOM05D007469 ORTHO05D003360 6.9e-33 145.6 274 58.4
Gohir.A07G218400 Gossypium hirsutum HOM05D007469 ORTHO05D003360 2.0e-32 144.1 270 63.3
EL10Ac8g18402 Beta vulgaris HOM05D007469 ORTHO05D003360 2.6e-32 143.7 218 43.1
Gohir.D07G225500 Gossypium hirsutum HOM05D007469 ORTHO05D003360 2.6e-32 143.7 270 63.7
arahy.Tifrunner.gnm1.ann1.RR2C2G Arachis hypogaea HOM05D007469 ORTHO05D003360 4.4e-32 142.9 279 56.6
FvH4_5g31250 Fragaria vesca HOM05D007469 ORTHO05D003360 1.3e-31 141.4 291 61.2
CANSAT64G0136 Cannabis sativa HOM05D007469 ORTHO05D003360 1.7e-31 141.0 319 54.5
Aa31LG9G1510 Aethionema arabicum HOM05D007469 ORTHO05D003360 1.1e-30 138.3 294 40.5
CDE10G0535 Ceratophyllum demersum HOM05D007469 ORTHO05D003360 4.2e-30 136.3 285 58.6
Eucgr.J02176 Eucalyptus grandis HOM05D007469 ORTHO05D003360 4.2e-30 136.3 148 55.4
Lj7C409T15 Lonicera japonica HOM05D007469 ORTHO05D003360 5.4e-30 136.0 276 51.8
Psat0s5166g0040 Pisum sativum HOM05D007469 ORTHO05D003360 5.4e-30 136.0 271 64.2
Sp7g01840 Schrenkiella parvula HOM05D007469 ORTHO05D003360 5.4e-30 136.0 333 50.8
PGR083G2689 Punica granatum HOM05D007469 ORTHO05D003360 7.1e-30 135.6 180 49.4
Ah.10g030590 Amaranthus hybridus HOM05D007469 ORTHO05D003360 1.5e-27 127.9 326 54.0
ATR1159G025 Amborella trichopoda HOM05D007469 ORTHO05D003360 1.5e-27 127.9 265 61.9
SGA_v2.0_scaffold30G12492 Striga asiatica HOM05D007469 ORTHO05D003360 5.6e-27 125.9 209 41.6
DCAR_013974 Daucus carota HOM05D007469 ORTHO05D003360 7.3e-27 125.6 257 65.4
CSS0038198 Camellia sinensis var. sinensis HOM05D007469 ORTHO05D003360 1.3e-26 124.8 330 53.9
Glyma.11G211316 Glycine max HOM05D007469 ORTHO05D003360 8.1e-26 122.1 292 59.2
Aqoxy3G00905 Aquilegia oxysepala HOM05D007469 ORTHO05D003360 1.1e-25 121.7 274 55.8
Lsat_1_v5_gn_4_181880 Lactuca sativa HOM05D007469 ORTHO05D003360 1.4e-25 121.3 118 59.3
Actinidia06038 Actinidia chinensis HOM05D007469 ORTHO05D003360 1.8e-25 120.9 327 55.7
Medtr2g048680 Medicago truncatula HOM05D007469 ORTHO05D003360 2.4e-25 120.6 291 58.8
Rhsim10G0026300 Rhododendron simsii HOM05D007469 ORTHO05D003360 6.9e-25 119.0 182 46.2
Rhsim10G0026800 Rhododendron simsii HOM05D007469 ORTHO05D003360 1.5e-24 117.9 176 44.9
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 3.4e-24 116.7 226 40.3
HanXRQChr15g0488381 Helianthus annuus HOM05D007469 ORTHO05D003360 3.4e-24 116.7 120 58.3
Nitab4.5_0001969g0030 Nicotiana tabacum HOM05D007469 ORTHO05D003360 4.5e-24 116.3 311 54.3
Actinidia36064 Actinidia chinensis HOM05D007469 ORTHO05D003360 7.6e-24 115.5 208 72.6
Glyma.18G044300 Glycine max HOM05D007469 ORTHO05D003360 9.9e-24 115.2 292 57.9
VMungo0540G0432 Vigna mungo HOM05D007469 ORTHO05D003360 6.4e-23 112.5 157 47.1
Phvul.006G086600 Phaseolus vulgaris HOM05D007469 ORTHO05D003360 8.4e-23 112.1 158 49.4
SalBow7G0002 Salvia bowleyana HOM05D007469 ORTHO05D003360 8.4e-23 112.1 261 60.5
Lj1g0016351 Lotus japonicus HOM05D007469 ORTHO05D003360 1.1e-22 111.7 335 53.1
Ca_02547_v3 Cicer arietinum L. HOM05D007469 ORTHO05D003360 1.4e-22 111.3 332 52.1
Migut.K01363 Erythranthe guttata HOM05D007469 ORTHO05D003360 1.9e-22 110.9 219 67.6
Lalb_Chr08g0233251 Lupinus albus HOM05D007469 ORTHO05D003360 1.9e-22 110.9 331 52.6
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 4.2e-22 109.8 93 63.4
Nitab4.5_0004567g0040 Nicotiana tabacum HOM05D007469 ORTHO05D003360 2.1e-21 107.5 313 54.6
CAN.G824.9 Capsicum annuum HOM05D007469 ORTHO05D003360 2.7e-21 107.1 257 61.9
unitig_0.g2798 Utricularia gibba HOM05D007469 ORTHO05D003360 2.7e-21 107.1 262 53.8
CSS0050487 Camellia sinensis var. sinensis HOM05D007469 ORTHO05D003360 4.6e-21 106.3 232 50.0
AUR62021431 Chenopodium quinoa HOM05D007469 ORTHO05D003360 1.0e-20 105.1 220 37.3
ECA232G1734 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.9e-20 103.2 112 54.5
Nn4g22877 Nelumbo nucifera HOM05D007469 ORTHO05D003360 1.5e-19 101.3 168 42.9
Peaxi162Scf00290g00012 Petunia axillaris HOM05D007469 ORTHO05D003360 2.5e-19 100.5 255 54.9
Cpa.g.sc88.45 Carica papaya HOM05D007469 ORTHO05D003360 1.3e-18 98.2 196 71.4
MD05G1026500 Malus domestica HOM05D007469 ORTHO05D003360 8.1e-18 95.5 288 55.9
Solyc09g009290.3 Solanum lycopersicum HOM05D007469 ORTHO05D003360 3.1e-17 93.6 178 41.0
HPP92_010841 Vanilla planifolia HOM05D007469 ORTHO05D003360 1.2e-16 91.7 139 44.6
Zm00001eb208780 Zea mays HOM05D007469 ORTHO05D003360 1.5e-16 91.3 253 58.1
Sopen09g004030 Solanum pennellii HOM05D007469 ORTHO05D003360 4.5e-16 89.7 178 40.4
SEGI_15817 Sequoiadendron giganteum HOM05D005999 ORTHO05D003360 2.9e-15 87.0 138 39.9
MBI14_g12788_MAGBIO Magnolia biondii HOM05D007469 ORTHO05D003360 3.8e-15 86.7 285 54.0
PGSC0003DMG400002708 Solanum tuberosum HOM05D007469 ORTHO05D003360 3.0e-12 77.0 183 36.6
PSO161G0131 Papaver somniferum HOM05D007469 ORTHO05D003360 3.9e-12 76.6 160 39.4
Lalb_Chr16g0377331 Lupinus albus HOM05D005999 ORTHO05D003360 2.5e-11 73.9 115 39.1
Lalb_Chr05g0212151 Lupinus albus HOM05D005999 ORTHO05D003360 8.2e-10 68.9 107 37.4
Lj2g0014093 Lotus japonicus HOM05D005999 ORTHO05D003360 1.1e-09 68.6 90 41.1
MBI05_g32278_MAGBIO Magnolia biondii HOM05D005999 ORTHO05D003360 1.1e-09 68.6 87 40.2
vmacro05796 Vaccinium macrocarpon HOM05D007469 ORTHO05D003360 1.1e-09 68.6 168 72.0
Zm00001eb170850 Zea mays HOM05D005999 ORTHO05D003360 1.4e-09 68.2 111 36.9
CANSAT01G1435 Cannabis sativa HOM05D005999 ORTHO05D003360 1.8e-09 67.8 90 37.8
Thecc.01G010800 Theobroma cacao HOM05D005999 ORTHO05D003360 3.1e-09 67.0 111 36.0
Gohir.D03G005000 Gossypium hirsutum HOM05D005999 ORTHO05D003360 4.1e-09 66.6 88 38.6
Gorai.003G005300 Gossypium raimondii HOM05D005999 ORTHO05D003360 4.1e-09 66.6 88 38.6
PSO170G6629 Papaver somniferum HOM05D005999 ORTHO05D003360 4.1e-09 66.6 110 35.5
CANSAT54G2046 Cannabis sativa HOM05D005999 ORTHO05D003360 5.3e-09 66.2 70 44.3
Phvul.002G103900 Phaseolus vulgaris HOM05D005999 ORTHO05D003360 5.3e-09 66.2 90 40.0
ECA232G4368 Erigeron canadensis HOM05D005999 ORTHO05D003360 6.9e-09 65.9 88 35.2
Zm00001eb211570 Zea mays HOM05D005999 ORTHO05D003360 1.2e-08 65.1 104 35.6
CARHR281700 Cardamine hirsuta HOM05D005999 ORTHO05D003360 1.5e-08 64.7 110 34.5
Lsat_1_v5_gn_4_143840 Lactuca sativa HOM05D005999 ORTHO05D003360 1.5e-08 64.7 83 39.8
Manes.01G151300 Manihot esculenta HOM05D005999 ORTHO05D003360 1.5e-08 64.7 100 37.0
Zm00001eb242830 Zea mays HOM05D005999 ORTHO05D003360 1.5e-08 64.7 104 35.6
Duzib147G0884 Durio zibethinus HOM05D005999 ORTHO05D003360 2.0e-08 64.3 111 35.1
Ciclev10025620m.g Citrus clementina HOM05D005999 ORTHO05D003360 2.6e-08 63.9 84 41.7
Oeu020651.1 Olea europaea HOM05D005999 ORTHO05D003360 2.6e-08 63.9 90 36.7
BraA09t36663Z Brassica rapa HOM05D005999 ORTHO05D003360 4.5e-08 63.2 90 35.6
VMungo1215G2992 Vigna mungo HOM05D005999 ORTHO05D003360 4.5e-08 63.2 90 38.9
CANSAT25G3254 Cannabis sativa HOM05D005999 ORTHO05D003360 5.8e-08 62.8 94 38.3
MD02G1122900 Malus domestica HOM05D005999 ORTHO05D003360 7.6e-08 62.4 108 36.1
GSVIVG01005198001 Vitis vinifera HOM05D005999 ORTHO05D003360 7.6e-08 62.4 81 42.0
CsaV3_6G047550 Cucumis sativus L. HOM05D005999 ORTHO05D003360 1.0e-07 62.0 111 34.2
Nitab4.5_0005409g0010 Nicotiana tabacum HOM05D005999 ORTHO05D003360 1.0e-07 62.0 88 37.5
Pp3c8_14440 Physcomitrium patens HOM05D005999 ORTHO05D003360 1.0e-07 62.0 101 37.6
BcaB04g20127 Brassica carinata HOM05D005999 ORTHO05D003360 1.3e-07 61.6 98 34.7
ECA080G0002 Erigeron canadensis HOM05D000340 ORTHO05D000821 1.3e-07 61.6 48 62.5
Thhalv10004296m.g Eutrema salsugineum HOM05D005999 ORTHO05D003360 1.3e-07 61.6 109 33.9
AL8G45550 Arabidopsis lyrata HOM05D005999 ORTHO05D003360 2.2e-07 60.8 111 35.1
Migut.L00736 Erythranthe guttata HOM05D005999 ORTHO05D003360 2.2e-07 60.8 91 35.2
Nn6g31889 Nelumbo nucifera HOM05D005999 ORTHO05D003360 2.2e-07 60.8 81 40.7
SalBow5G5732 Salvia bowleyana HOM05D005999 ORTHO05D003360 2.2e-07 60.8 110 31.8
Sc16g0001790 Simmondsia chinensis HOM05D005999 ORTHO05D003360 2.2e-07 60.8 100 37.0
Aa31LG9G1330 Aethionema arabicum HOM05D005999 ORTHO05D003360 2.9e-07 60.5 100 34.0
PGSC0003DMG400008679 Solanum tuberosum HOM05D005999 ORTHO05D003360 2.9e-07 60.5 71 42.3
Gohir.A02G174800 Gossypium hirsutum HOM05D005999 ORTHO05D003360 3.8e-07 60.1 81 38.3
Nitab4.5_0000188g0250 Nicotiana tabacum HOM05D005999 ORTHO05D003360 3.8e-07 60.1 105 35.2
BcaC04g23109 Brassica carinata HOM05D005999 ORTHO05D003360 5.0e-07 59.7 109 33.0
arahy.Tifrunner.gnm1.ann1.74V199 Arachis hypogaea HOM05D005999 ORTHO05D003360 8.4e-07 58.9 85 36.5
arahy.Tifrunner.gnm1.ann1.JK0YGC Arachis hypogaea HOM05D005999 ORTHO05D003360 8.4e-07 58.9 85 36.5
Sp2g30630 Schrenkiella parvula HOM05D005999 ORTHO05D003360 8.4e-07 58.9 109 33.0
Sopen02g012860 Solanum pennellii HOM05D005999 ORTHO05D003360 8.4e-07 58.9 108 34.3
AT5G66055 Arabidopsis thaliana HOM05D005999 ORTHO05D003360 1.1e-06 58.5 109 31.2
PSO210G1231 Papaver somniferum HOM05D005999 ORTHO05D003360 1.1e-06 58.5 102 35.3
Atru.chr3.914 Acer truncatum HOM05D005999 ORTHO05D003360 1.4e-06 58.2 93 36.6
Atru.chr3.919 Acer truncatum HOM05D005999 ORTHO05D003360 1.4e-06 58.2 93 36.6
Phvul.002G104000 Phaseolus vulgaris HOM05D005999 ORTHO05D003360 1.4e-06 58.2 83 37.3
ClCG01G020640 Citrullus lanatus HOM05D005999 ORTHO05D003360 1.9e-06 57.8 102 31.4
Medtr5g022050 Medicago truncatula HOM05D005999 ORTHO05D003360 1.9e-06 57.8 88 39.8
VMungo1215G1128 Vigna mungo HOM05D005999 ORTHO05D003360 2.5e-06 57.4 101 32.7
CBR_g23825 Chara braunii HOM05D001539 ORTHO05D000937 3.2e-06 57.0 93 31.2
Solyc02g061820.4 Solanum lycopersicum HOM05D005999 ORTHO05D003360 4.2e-06 56.6 106 33.0
Glyma.11G081800 Glycine max HOM05D005999 ORTHO05D003360 5.5e-06 56.2 80 36.2
Lj6A806T47 Lonicera japonica HOM05D005999 ORTHO05D003360 5.5e-06 56.2 82 36.6
Sed0006391 Sechium edule HOM05D005999 ORTHO05D003360 5.5e-06 56.2 92 35.9
Actinidia28462 Actinidia chinensis HOM05D007469 ORTHO05D003360 7.2e-06 55.8 53 52.8
MSTRG.3620 Avicennia marina HOM05D005999 ORTHO05D003360 7.2e-06 55.8 77 36.4
TWI73G0962 Tripterygium wilfordii HOM05D005999 ORTHO05D003360 7.2e-06 55.8 90 37.8
THA.LOC104826498 Tarenaya hassleriana HOM05D005999 ORTHO05D003360 9.3e-06 55.5 80 36.2
TPR.G25134 Trifolium pratense HOM05D005999 ORTHO05D003360 9.3e-06 55.5 153 34.6


User provided reference genes

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