Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C021126.2 Cucumis melo HOM05D006330 ORTHO05D008013 2.6e-164 582.0 297 100.0
CsaV3_7G026730 Cucumis sativus L. HOM05D006330 ORTHO05D008013 7.7e-161 570.5 297 98.0
ClCG09G008360 Citrullus lanatus HOM05D006330 ORTHO05D008013 3.5e-153 545.0 297 93.9
Sed0009827 Sechium edule HOM05D006330 ORTHO05D008013 4.5e-145 518.1 299 89.0
TAR362G0826 Trochodendron aralioides HOM05D006330 ORTHO05D008013 3.5e-121 438.7 264 83.3
GSVIVG01001532001 Vitis vinifera HOM05D006330 ORTHO05D008013 1.7e-120 436.4 285 79.3
PGR044G2230 Punica granatum HOM05D006330 ORTHO05D008013 1.9e-119 433.0 257 84.4
Gohir.D11G150300 Gossypium hirsutum HOM05D006330 ORTHO05D008013 2.5e-119 432.6 298 75.8
Gorai.007G161200 Gossypium raimondii HOM05D006330 ORTHO05D008013 2.5e-119 432.6 296 76.0
Gohir.A11G143900 Gossypium hirsutum HOM05D006330 ORTHO05D008013 5.6e-119 431.4 298 75.5
Manes.12G055500 Manihot esculenta HOM05D006330 ORTHO05D008013 9.5e-119 430.6 257 83.7
Nn7g37444 Nelumbo nucifera HOM05D006330 ORTHO05D008013 9.5e-119 430.6 263 82.1
Thecc.01G207700 Theobroma cacao HOM05D006330 ORTHO05D008013 9.5e-119 430.6 264 82.6
Haze_03505 Corylus avellana HOM05D006330 ORTHO05D008013 1.6e-118 429.9 270 80.7
Cfa010572 Carpinus fangiana HOM05D006330 ORTHO05D008013 2.8e-118 429.1 270 81.1
QL09p047707 Quercus lobata HOM05D006330 ORTHO05D008013 3.6e-118 428.7 270 80.4
Duzib133G1456 Durio zibethinus HOM05D006330 ORTHO05D008013 1.4e-117 426.8 296 75.0
HPP92_007591 Vanilla planifolia HOM05D006330 ORTHO05D008013 8.9e-117 424.1 259 81.1
CiPaw.13G055600 Carya illinoinensis HOM05D006330 ORTHO05D008013 2.6e-116 422.5 264 80.3
MBI10_g35385_MAGBIO Magnolia biondii HOM05D006330 ORTHO05D008013 4.4e-116 421.8 259 81.9
Eucgr.K02361 Eucalyptus grandis HOM05D006330 ORTHO05D008013 2.9e-115 419.1 258 81.4
TWI36G1481 Tripterygium wilfordii HOM05D006330 ORTHO05D008013 2.9e-115 419.1 263 80.6
CDE02G1604 Ceratophyllum demersum HOM05D006330 ORTHO05D008013 1.9e-114 416.4 262 78.2
RcHm_v2.0_Chr6g0282221 Rosa chinensis HOM05D006330 ORTHO05D008013 1.9e-114 416.4 265 80.4
FAN15G1514 Fragaria x ananassa HOM05D006330 ORTHO05D008013 2.4e-114 416.0 272 77.9
Glyma.03G097100 Glycine max HOM05D006330 ORTHO05D008013 3.2e-114 415.6 258 81.4
Ciclev10015989m.g Citrus clementina HOM05D006330 ORTHO05D008013 4.1e-114 415.2 266 78.2
Lj2C1112G6 Lonicera japonica HOM05D006330 ORTHO05D008013 4.1e-114 415.2 271 78.6
Lalb_Chr12g0210221 Lupinus albus HOM05D006330 ORTHO05D008013 5.4e-114 414.8 264 79.9
Aqoxy2G02383 Aquilegia oxysepala HOM05D006330 ORTHO05D008013 7.1e-114 414.5 258 79.8
Sc05g0001630 Simmondsia chinensis HOM05D006330 ORTHO05D008013 9.2e-114 414.1 259 81.1
Actinidia23802 Actinidia chinensis HOM05D006330 ORTHO05D008013 3.5e-113 412.1 268 78.7
Potri.014G175500 Populus trichocarpa HOM05D006330 ORTHO05D008013 4.6e-113 411.8 265 81.5
THA.LOC104804704 Tarenaya hassleriana HOM05D006330 ORTHO05D008013 4.6e-113 411.8 261 79.3
Cc01_g15880 Coffea canephora HOM05D006330 ORTHO05D008013 6.0e-113 411.4 260 79.6
FvH4_2g17480 Fragaria vesca HOM05D006330 ORTHO05D008013 6.0e-113 411.4 272 76.8
PSO675G8704 Papaver somniferum HOM05D006330 ORTHO05D008013 2.3e-112 409.5 265 78.1
ATR0743G141 Amborella trichopoda HOM05D006330 ORTHO05D008013 3.0e-112 409.1 269 77.0
Glyma.07G124200 Glycine max HOM05D006330 ORTHO05D008013 3.0e-112 409.1 258 80.6
Prupe.8G187200 Prunus persica HOM05D006330 ORTHO05D008013 3.0e-112 409.1 294 72.8
Actinidia34530 Actinidia chinensis HOM05D006330 ORTHO05D008013 5.1e-112 408.3 269 77.7
Atru.chr6.3528 Acer truncatum HOM05D006330 ORTHO05D008013 6.6e-112 407.9 258 81.0
FAN24G2605 Fragaria x ananassa HOM05D006330 ORTHO05D008013 6.6e-112 407.9 272 76.5
CANSAT01G2136 Cannabis sativa HOM05D006330 ORTHO05D008013 1.1e-111 407.1 259 81.1
MD10G1148200 Malus domestica HOM05D006330 ORTHO05D008013 1.5e-111 406.8 298 71.5
Phvul.010G036400 Phaseolus vulgaris HOM05D006330 ORTHO05D008013 1.5e-111 406.8 263 78.7
HanXRQChr07g0190561 Helianthus annuus HOM05D006330 ORTHO05D008013 2.5e-111 406.0 295 71.9
Lsat_1_v5_gn_9_16880 Lactuca sativa HOM05D006330 ORTHO05D008013 2.5e-111 406.0 262 76.7
VMungo0331G1131 Vigna mungo HOM05D006330 ORTHO05D008013 3.3e-111 405.6 264 78.4
Sopen09g015980 Solanum pennellii HOM05D006330 ORTHO05D008013 5.6e-111 404.8 245 81.2
Psat4g208240 Pisum sativum HOM05D006330 ORTHO05D008013 1.2e-110 403.7 273 75.8
arahy.Tifrunner.gnm1.ann1.84ZR2Z Arachis hypogaea HOM05D006330 ORTHO05D008013 1.6e-110 403.3 287 73.9
EL10Ac5g10587 Beta vulgaris HOM05D006330 ORTHO05D008013 3.6e-110 402.1 242 82.2
Rhsim01G0247700 Rhododendron simsii HOM05D006330 ORTHO05D008013 3.6e-110 402.1 249 80.3
AUR62008069 Chenopodium quinoa HOM05D006330 ORTHO05D008013 1.4e-109 400.2 245 80.4
TPR.G17377 Trifolium pratense HOM05D006330 ORTHO05D008013 1.4e-109 400.2 257 78.6
arahy.Tifrunner.gnm1.ann1.3RIK1P Arachis hypogaea HOM05D006330 ORTHO05D008013 2.4e-109 399.4 286 73.4
Ca_23158_v3 Cicer arietinum L. HOM05D006330 ORTHO05D008013 5.2e-109 398.3 257 80.2
Medtr8g010130 Medicago truncatula HOM05D006330 ORTHO05D008013 2.0e-108 396.4 257 78.6
Zm00001eb168340 Zea mays HOM05D006330 ORTHO05D008013 2.0e-108 396.4 272 72.1
ECA247G1307 Erigeron canadensis HOM05D006330 ORTHO05D008013 2.6e-108 396.0 285 71.6
MSTRG.21296 Avicennia marina HOM05D006330 ORTHO05D008013 4.4e-108 395.2 267 73.8
Hma1.2p1_0161F.1_g071650 Hydrangea macrophylla HOM05D006330 ORTHO05D008013 9.9e-108 394.0 241 83.4
vmacro14689 Vaccinium macrocarpon HOM05D006330 ORTHO05D008013 9.9e-108 394.0 254 77.6
DCAR_004774 Daucus carota HOM05D006330 ORTHO05D008013 8.4e-107 391.0 289 69.9
SGA_v2.0_scaffold231G43447 Striga asiatica HOM05D006330 ORTHO05D008013 4.2e-106 388.7 274 72.3
Aa31sc18G40 Aethionema arabicum HOM05D006330 ORTHO05D008013 5.4e-106 388.3 241 80.1
Os11g0247400 Oryza sativa ssp. japonica HOM05D006330 ORTHO05D008013 9.2e-106 387.5 270 73.0
BcaB08g34453 Brassica carinata HOM05D006330 ORTHO05D008013 2.1e-105 386.3 249 77.1
C03p54570 Brassica napus HOM05D006330 ORTHO05D008013 2.1e-105 386.3 249 77.1
BolC3t17744H Brassica oleracea HOM05D006330 ORTHO05D008013 2.1e-105 386.3 249 77.1
Thhalv10002617m.g Eutrema salsugineum HOM05D006330 ORTHO05D008013 2.1e-105 386.3 269 73.2
SalBow3G0290 Salvia bowleyana HOM05D006330 ORTHO05D008013 1.3e-104 383.6 272 71.0
Sp3g22990 Schrenkiella parvula HOM05D006330 ORTHO05D008013 3.9e-104 382.1 270 72.6
AL3G41590 Arabidopsis lyrata HOM05D006330 ORTHO05D008013 5.1e-104 381.7 266 71.4
BcaC06g35817 Brassica carinata HOM05D006330 ORTHO05D008013 5.1e-104 381.7 249 76.3
Carub.0003s2579 Capsella rubella HOM05D006330 ORTHO05D008013 5.1e-104 381.7 270 70.7
A03p44190 Brassica napus HOM05D006330 ORTHO05D008013 6.6e-104 381.3 249 76.3
BraA03t13548Z Brassica rapa HOM05D006330 ORTHO05D008013 6.6e-104 381.3 249 76.3
A07p06930 Brassica napus HOM05D006330 ORTHO05D008013 1.1e-103 380.6 249 75.9
BraA07t28484Z Brassica rapa HOM05D006330 ORTHO05D008013 1.1e-103 380.6 249 75.9
CARHR101770 Cardamine hirsuta HOM05D006330 ORTHO05D008013 1.9e-103 379.8 267 72.7
Hund09482 Selenicereus undatus HOM05D006330 ORTHO05D008013 2.5e-103 379.4 257 77.0
AT3G25470 Arabidopsis thaliana HOM05D006330 ORTHO05D008013 7.3e-103 377.9 267 70.8
BolC7t41520H Brassica oleracea HOM05D006330 ORTHO05D008013 1.2e-102 377.1 250 76.0
C07p10530 Brassica napus HOM05D006330 ORTHO05D008013 2.1e-102 376.3 250 76.0
Migut.D00775 Erythranthe guttata HOM05D006330 ORTHO05D008013 1.8e-101 373.2 266 69.9
Sabra14G0134300 Salix brachista HOM05D006330 ORTHO05D008013 3.1e-101 372.5 261 76.6
COL.COLO4_34269 Corchorus olitorius HOM05D006330 ORTHO05D008013 9.0e-101 370.9 218 85.3
Mapoly0006s0124 Marchantia polymorpha HOM05D006330 ORTHO05D008013 3.8e-99 365.5 245 72.7
Ciclev10018050m.g Citrus clementina HOM05D006330 ORTHO05D008013 1.9e-98 363.2 229 80.3
Pp3c24_1560 Physcomitrium patens HOM05D006330 ORTHO05D008013 2.1e-97 359.8 251 70.1
AUR62028646 Chenopodium quinoa HOM05D006330 ORTHO05D008013 7.8e-97 357.8 219 80.8
BcaC01g03225 Brassica carinata HOM05D006330 ORTHO05D008013 4.8e-94 348.6 249 71.9
CBR_g60689 Chara braunii HOM05D006330 ORTHO05D008013 4.6e-89 332.0 237 71.3
Lj3g0006219 Lotus japonicus HOM05D006330 ORTHO05D008013 4.6e-89 332.0 225 76.9
CSS0004044 Camellia sinensis var. sinensis HOM05D006330 ORTHO05D008013 3.0e-88 329.3 265 66.4
Oeu049580.1 Olea europaea HOM05D006330 ORTHO05D008013 1.3e-86 323.9 224 73.2
SMO141G0006 Selaginella moellendorffii HOM05D006330 ORTHO05D008013 1.6e-86 323.6 254 64.6
Dinv28793 Davidia involucrata HOM05D006330 ORTHO05D008013 2.8e-86 322.8 206 82.0
Peaxi162Scf00841g00112 Petunia axillaris HOM05D006330 ORTHO05D008013 3.1e-85 319.3 277 64.3
SMO186G0001 Selaginella moellendorffii HOM05D006330 ORTHO05D008013 9.9e-84 314.3 245 64.5
BcaB06g26747 Brassica carinata HOM05D006330 ORTHO05D008013 3.8e-83 312.4 299 58.2
Nitab4.5_0010469g0010 Nicotiana tabacum HOM05D006330 ORTHO05D008013 4.2e-82 308.9 206 77.7
Nitab4.5_0000038g0340 Nicotiana tabacum HOM05D006330 ORTHO05D008013 9.3e-82 307.8 187 82.9
Solyc09g047870.4 Solanum lycopersicum HOM05D006330 ORTHO05D008013 9.3e-82 307.8 206 77.7
Cpa.g.sc8.41 Carica papaya HOM05D006330 ORTHO05D008013 1.8e-80 303.5 223 71.7
PSO732G0743 Papaver somniferum HOM05D006330 ORTHO05D008013 2.3e-80 303.1 179 84.4
MCO07G099 Micromonas commoda HOM05D006330 ORTHO05D008013 3.0e-72 276.2 240 57.9
HanXRQChr07g0198371 Helianthus annuus HOM05D006330 ORTHO05D008013 1.1e-71 274.2 187 75.9
FAN27G2337 Fragaria x ananassa HOM05D006330 ORTHO05D008013 6.9e-69 265.0 272 57.4
Cre10.g428900 Chlamydomonas reinhardtii HOM05D006330 ORTHO05D008013 3.2e-66 256.1 244 57.8
PRCOL_00000451 Prasinoderma coloniale HOM05D006330 ORTHO05D008013 2.3e-56 223.4 294 45.9
CAN.G253.5 Capsicum annuum HOM05D006330 ORTHO05D008013 8.2e-54 214.9 130 83.1
SEGI_37995 Sequoiadendron giganteum HOM05D006330 ORTHO05D008013 2.8e-46 189.9 116 77.6
AagrBONN_evm.TU.Sc2ySwM_368.2380 Anthoceros agrestis HOM05D006330 ORTHO05D008013 8.8e-40 168.3 116 69.8
arahy.Tifrunner.gnm1.ann1.VBTZ6V Arachis hypogaea HOM05D006330 ORTHO05D008013 1.7e-35 154.1 112 68.8
Hma1.2p1_0161F.1_g071660 Hydrangea macrophylla HOM05D006330 ORTHO05D008013 2.5e-34 150.2 83 86.7
PSO675G8411 Papaver somniferum HOM05D006330 ORTHO05D008013 2.7e-33 146.7 104 72.1
CDE04G0367 Ceratophyllum demersum HOM05D006330 ORTHO05D008013 4.5e-28 129.4 90 68.9
Cfa009322 Carpinus fangiana HOM05D006614 ORTHO05D008217 1.5e-26 124.4 77 80.5
BcaB06g26875 Brassica carinata HOM05D006330 ORTHO05D008013 2.4e-13 80.5 64 68.8
VMungo1383G2211 Vigna mungo HOM05D006330 ORTHO05D434633 2.1e-09 67.4 44 70.5
RcHm_v2.0_Chr5g0065021 Rosa chinensis HOM05D006330 ORTHO05D008013 2.3e-08 63.9 46 65.2


User provided reference genes

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