Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C020947.2 Cucumis melo HOM05D006287 ORTHO05D008192 8.3e-123 445.7 482 100.0
CsaV3_2G017510 Cucumis sativus L. HOM05D006287 ORTHO05D008192 3.6e-110 403.7 482 82.4
ClCG02G013330 Citrullus lanatus HOM05D006287 ORTHO05D008192 9.8e-92 342.4 483 73.1
Sed0001816 Sechium edule HOM05D006287 ORTHO05D008192 1.1e-69 269.2 483 76.0
Sed0018262 Sechium edule HOM05D006287 ORTHO05D008192 5.1e-56 223.8 206 62.6
CiPaw.06G059600 Carya illinoinensis HOM05D006287 ORTHO05D008192 7.2e-26 123.6 217 38.7
CANSAT11G2472 Cannabis sativa HOM05D006287 ORTHO05D008192 9.4e-26 123.2 134 50.7
Prupe.6G275900 Prunus persica HOM05D006287 ORTHO05D008192 4.7e-25 120.9 185 41.1
QL05p049822 Quercus lobata HOM05D006287 ORTHO05D008192 7.9e-25 120.2 131 48.1
Gorai.011G097400 Gossypium raimondii HOM05D006287 ORTHO05D008192 2.3e-24 118.6 130 46.9
Cpa.g.sc1.269 Carica papaya HOM05D006287 ORTHO05D008192 8.8e-24 116.7 208 36.1
Duzib168G0154 Durio zibethinus HOM05D006287 ORTHO05D008192 5.7e-23 114.0 126 43.7
Atru.chr7.2375 Acer truncatum HOM05D006287 ORTHO05D008192 3.7e-22 111.3 206 39.3
QL08p000602 Quercus lobata HOM05D006287 ORTHO05D008192 6.3e-22 110.5 203 36.9
GSVIVG01035807001 Vitis vinifera HOM05D006287 ORTHO05D008192 8.2e-22 110.2 126 46.0
CSS0048694 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 1.1e-21 109.8 133 43.6
Haze_21571 Corylus avellana HOM05D006287 ORTHO05D008192 1.1e-21 109.8 218 35.3
Duzib150G0458 Durio zibethinus HOM05D006287 ORTHO05D008192 1.8e-21 109.0 149 42.3
Actinidia15687 Actinidia chinensis HOM05D006287 ORTHO05D008192 2.4e-21 108.6 200 36.0
Thecc.09G149000 Theobroma cacao HOM05D006287 ORTHO05D008192 1.2e-20 106.3 127 43.3
Phvul.009G090400 Phaseolus vulgaris HOM05D006287 ORTHO05D008192 2.6e-20 105.1 126 45.2
Potri.006G250700 Populus trichocarpa HOM05D006287 ORTHO05D008192 2.6e-20 105.1 134 44.0
Glyma.07G068500 Glycine max HOM05D006287 ORTHO05D008192 3.5e-20 104.8 126 46.0
Psat7g237040 Pisum sativum HOM05D006287 ORTHO05D008192 4.5e-20 104.4 130 41.5
COL.COLO4_23984 Corchorus olitorius HOM05D006287 ORTHO05D008192 1.0e-19 103.2 124 44.4
Ciclev10010816m.g Citrus clementina HOM05D006287 ORTHO05D008192 1.7e-19 102.4 126 42.1
LjContig00081g0002723 Lotus japonicus HOM05D006287 ORTHO05D008192 2.9e-19 101.7 125 43.2
Oeu008766.1 Olea europaea HOM05D006287 ORTHO05D008192 3.8e-19 101.3 206 35.0
Ca_26550_v3 Cicer arietinum L. HOM05D006287 ORTHO05D008192 5.0e-19 100.9 119 44.5
VMungo0331G1641 Vigna mungo HOM05D006287 ORTHO05D008192 1.5e-18 99.4 127 43.3
Lalb_Chr07g0185941 Lupinus albus HOM05D006287 ORTHO05D008192 2.5e-18 98.6 130 40.0
Nn5g27729 Nelumbo nucifera HOM05D006287 ORTHO05D008192 2.5e-18 98.6 171 38.0
Sabra06G0196000 Salix brachista HOM05D001686 ORTHO05D008192 2.5e-18 98.6 204 33.8
CSS0042508 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 3.2e-18 98.2 132 39.4
Dinv11617 Davidia involucrata HOM05D006287 ORTHO05D008192 3.2e-18 98.2 130 43.1
RcHm_v2.0_Chr7g0216391 Rosa chinensis HOM05D006287 ORTHO05D008192 5.5e-18 97.4 129 43.4
TWI63G1321 Tripterygium wilfordii HOM05D006287 ORTHO05D008192 5.5e-18 97.4 133 39.1
TPR.G5606 Trifolium pratense HOM05D006287 ORTHO05D008192 7.2e-18 97.1 127 37.8
arahy.Tifrunner.gnm1.ann1.VPFI8Q Arachis hypogaea HOM05D006287 ORTHO05D008192 2.1e-17 95.5 126 39.7
Medtr4g076540 Medicago truncatula HOM05D006287 ORTHO05D008192 1.4e-16 92.8 119 41.2
Hma1.2p1_0007F.1_g005110 Hydrangea macrophylla HOM05D006287 ORTHO05D008192 1.8e-16 92.4 176 36.4
Nn3g20345 Nelumbo nucifera HOM05D006287 ORTHO05D008192 2.3e-16 92.0 128 43.0
Cc11_g01810 Coffea canephora HOM05D006287 ORTHO05D008192 4.4e-15 87.8 159 35.8
Eucgr.I01690 Eucalyptus grandis HOM05D006287 ORTHO05D008192 9.7e-15 86.7 123 38.2
PGR142G2973 Punica granatum HOM05D006287 ORTHO05D008192 1.7e-14 85.9 121 33.9
TPR.G5411 Trifolium pratense HOM05D008207 ORTHO05D010373 1.7e-14 85.9 125 36.0
Oeu032501.2 Olea europaea HOM05D006287 ORTHO05D008192 2.2e-14 85.5 132 37.9
CAN.G98.23 Capsicum annuum HOM05D006287 ORTHO05D008192 3.7e-14 84.7 126 34.9
Nitab4.5_0000151g0190 Nicotiana tabacum HOM05D006287 ORTHO05D008192 4.8e-14 84.3 149 34.9
MBI08_g04815_MAGBIO Magnolia biondii HOM05D006287 ORTHO05D008192 6.3e-14 84.0 130 36.2
Nitab4.5_0001669g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 1.1e-13 83.2 148 33.8
DCAR_006447 Daucus carota HOM05D006287 ORTHO05D008192 1.4e-13 82.8 129 35.7
Aqoxy7G02057 Aquilegia oxysepala HOM05D006287 ORTHO05D008192 2.4e-13 82.0 127 33.9
MSTRG.25851 Avicennia marina HOM05D006287 ORTHO05D008192 3.1e-13 81.6 209 33.0
PGSC0003DMG400023145 Solanum tuberosum HOM05D006287 ORTHO05D008192 3.1e-13 81.6 148 34.5
Peaxi162Scf00341g00062 Petunia axillaris HOM05D006287 ORTHO05D008192 4.1e-13 81.3 136 39.0
Solyc08g067060.2 Solanum lycopersicum HOM05D006287 ORTHO05D008192 4.1e-13 81.3 125 36.0
AL4G36540 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 5.3e-13 80.9 126 34.9
Sopen08g021010 Solanum pennellii HOM05D006287 ORTHO05D008192 5.3e-13 80.9 125 36.0
Lj7C718G17 Lonicera japonica HOM05D006287 ORTHO05D008192 7.0e-13 80.5 202 32.7
Sp4g21560 Schrenkiella parvula HOM05D006287 ORTHO05D008192 4.5e-12 77.8 206 28.2
SpUn0018_0110 Schrenkiella parvula HOM05D006287 ORTHO05D008192 4.5e-12 77.8 206 28.2
THA.LOC104824237 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 5.9e-12 77.4 128 33.6
FvH4_5g25890 Fragaria vesca HOM05D006287 ORTHO05D008192 7.7e-12 77.0 128 37.5
FAN18G3351 Fragaria x ananassa HOM05D006287 ORTHO05D008192 7.7e-12 77.0 128 37.5
MD04G1151000 Malus domestica HOM05D006287 ORTHO05D008192 1.0e-11 76.6 79 49.4
MSTRG.11775 Avicennia marina HOM05D006287 ORTHO05D008192 1.7e-11 75.9 181 31.5
Carub.0004s2128 Capsella rubella HOM05D006287 ORTHO05D008192 2.9e-11 75.1 202 31.7
Aa31sc33G30 Aethionema arabicum HOM05D006287 ORTHO05D008192 1.9e-10 72.4 134 30.6
SGA_v2.0_scaffold22G09931 Striga asiatica HOM05D006287 ORTHO05D008192 1.9e-10 72.4 124 32.3
A09p47970 Brassica napus HOM05D006287 ORTHO05D008192 9.4e-10 70.1 198 29.8
Sc25g0000480 Simmondsia chinensis HOM05D006287 ORTHO05D008192 1.2e-09 69.7 157 32.5
AT2G39230 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 1.6e-09 69.3 173 28.9
Thhalv10017602m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 2.1e-09 68.9 199 27.6
MD12G1164900 Malus domestica HOM05D006287 ORTHO05D008192 2.7e-09 68.6 76 44.7
THA.LOC104809984 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 2.7e-09 68.6 205 28.3
CARHR164980 Cardamine hirsuta HOM05D006287 ORTHO05D008192 4.7e-09 67.8 127 31.5
BolC8t50627H Brassica oleracea HOM05D006287 ORTHO05D008192 1.4e-08 66.2 138 30.4
HPP92_023171 Vanilla planifolia HOM05D006287 ORTHO05D008192 3.0e-08 65.1 146 30.1
Nitab4.5_0008089g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 6.8e-08 63.9 74 39.2
ATR0782G035 Amborella trichopoda HOM05D006287 ORTHO05D008192 8.8e-08 63.5 128 28.1
BcaNung04649 Brassica carinata HOM05D006287 ORTHO05D008192 8.8e-08 63.5 200 30.0
C08p30210 Brassica napus HOM05D006287 ORTHO05D008192 8.8e-08 63.5 200 30.0
BraA09t40252Z Brassica rapa HOM05D006287 ORTHO05D008192 1.2e-07 63.2 195 27.7
CDE03G0083 Ceratophyllum demersum HOM05D006287 ORTHO05D008192 1.5e-07 62.8 220 25.5
Ah.13g068920 Amaranthus hybridus HOM05D006287 ORTHO05D008192 3.4e-07 61.6 123 33.3
ATR0782G042 Amborella trichopoda HOM05D006287 ORTHO05D008192 3.4e-07 61.6 133 30.1
BcaB01g00140 Brassica carinata HOM05D006287 ORTHO05D008192 3.4e-07 61.6 139 29.5
AL5G36090 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 7.5e-07 60.5 127 29.1
AT3G54980 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 2.8e-06 58.5 198 25.3
Carub.0005s2160 Capsella rubella HOM05D006287 ORTHO05D008192 3.7e-06 58.2 200 25.5
HanXRQChr02g0050751 Helianthus annuus HOM05D006287 ORTHO05D008192 3.7e-06 58.2 137 29.2


User provided reference genes

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